Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00310

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00308 and CCNA_00309 are separated by 122 nucleotidesCCNA_00309 and CCNA_00310 are separated by 20 nucleotidesCCNA_00310 and CCNA_00311 overlap by 4 nucleotides CCNA_00308: CCNA_00308 - protein tyrosine phosphatase CtpA, at 323,024 to 323,689 _00308 CCNA_00309: CCNA_00309 - hypothetical protein, at 323,812 to 324,045 _00309 CCNA_00310: CCNA_00310 - 3'-phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase family protein, at 324,066 to 324,845 _00310 CCNA_00311: CCNA_00311 - Zn-dependent protease family protein, at 324,842 to 326,173 _00311 Position (kb) 324 325Strain fitness (log2 ratio) -2 -1 0 1at 323.067 kb on - strandat 323.067 kb on - strandat 323.254 kb on + strand, within CCNA_00308at 323.653 kb on - strandat 323.704 kb on + strandat 323.704 kb on + strandat 323.714 kb on - strandat 323.726 kb on - strandat 323.732 kb on - strandat 323.811 kb on - strandat 323.811 kb on - strandat 324.057 kb on + strandat 324.057 kb on + strandat 324.064 kb on + strandat 324.065 kb on - strandat 324.065 kb on - strandat 324.065 kb on - strandat 324.132 kb on - strandat 324.166 kb on + strand, within CCNA_00310at 324.174 kb on - strand, within CCNA_00310at 324.195 kb on - strand, within CCNA_00310at 324.195 kb on - strand, within CCNA_00310at 324.302 kb on + strand, within CCNA_00310at 324.310 kb on - strand, within CCNA_00310at 324.422 kb on + strand, within CCNA_00310at 324.431 kb on - strand, within CCNA_00310at 324.444 kb on + strand, within CCNA_00310at 324.452 kb on - strand, within CCNA_00310at 324.461 kb on - strand, within CCNA_00310at 324.462 kb on + strand, within CCNA_00310at 324.469 kb on - strand, within CCNA_00310at 324.475 kb on - strand, within CCNA_00310at 324.480 kb on + strand, within CCNA_00310at 324.483 kb on - strand, within CCNA_00310at 324.486 kb on + strand, within CCNA_00310at 324.491 kb on + strand, within CCNA_00310at 324.514 kb on - strand, within CCNA_00310at 324.529 kb on + strand, within CCNA_00310at 324.562 kb on + strand, within CCNA_00310at 324.598 kb on + strand, within CCNA_00310at 324.612 kb on - strand, within CCNA_00310at 324.692 kb on + strand, within CCNA_00310at 324.752 kb on + strand, within CCNA_00310at 324.782 kb on - strandat 324.799 kb on - strandat 324.825 kb on + strandat 324.830 kb on + strandat 324.838 kb on - strandat 324.838 kb on - strandat 325.004 kb on + strand, within CCNA_00311at 325.004 kb on + strand, within CCNA_00311at 325.005 kb on - strand, within CCNA_00311at 325.076 kb on + strand, within CCNA_00311at 325.076 kb on + strand, within CCNA_00311at 325.089 kb on - strand, within CCNA_00311at 325.150 kb on - strand, within CCNA_00311at 325.193 kb on + strand, within CCNA_00311at 325.234 kb on + strand, within CCNA_00311at 325.256 kb on + strand, within CCNA_00311at 325.298 kb on + strand, within CCNA_00311at 325.312 kb on + strand, within CCNA_00311at 325.320 kb on - strand, within CCNA_00311at 325.446 kb on - strand, within CCNA_00311at 325.446 kb on - strand, within CCNA_00311at 325.521 kb on - strand, within CCNA_00311at 325.531 kb on - strand, within CCNA_00311at 325.625 kb on + strand, within CCNA_00311at 325.638 kb on - strand, within CCNA_00311at 325.702 kb on + strand, within CCNA_00311at 325.705 kb on - strand, within CCNA_00311at 325.758 kb on + strand, within CCNA_00311at 325.758 kb on + strand, within CCNA_00311at 325.766 kb on - strand, within CCNA_00311at 325.766 kb on - strand, within CCNA_00311at 325.801 kb on + strand, within CCNA_00311at 325.816 kb on - strand, within CCNA_00311at 325.840 kb on + strand, within CCNA_00311

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
remove
323,067 - -1.7
323,067 - -0.2
323,254 + CCNA_00308 0.35 +0.6
323,653 - +1.0
323,704 + +0.7
323,704 + +0.0
323,714 - -0.4
323,726 - +0.2
323,732 - -0.1
323,811 - +0.0
323,811 - +0.2
324,057 + +0.0
324,057 + -0.7
324,064 + -0.0
324,065 - +0.1
324,065 - -0.0
324,065 - -0.9
324,132 - +0.4
324,166 + CCNA_00310 0.13 +0.0
324,174 - CCNA_00310 0.14 +0.3
324,195 - CCNA_00310 0.17 +0.3
324,195 - CCNA_00310 0.17 +0.4
324,302 + CCNA_00310 0.30 -0.5
324,310 - CCNA_00310 0.31 +0.5
324,422 + CCNA_00310 0.46 -0.0
324,431 - CCNA_00310 0.47 +0.3
324,444 + CCNA_00310 0.48 +0.8
324,452 - CCNA_00310 0.49 -0.6
324,461 - CCNA_00310 0.51 -0.3
324,462 + CCNA_00310 0.51 -0.3
324,469 - CCNA_00310 0.52 -0.4
324,475 - CCNA_00310 0.52 +0.9
324,480 + CCNA_00310 0.53 -0.9
324,483 - CCNA_00310 0.53 -0.4
324,486 + CCNA_00310 0.54 -0.7
324,491 + CCNA_00310 0.54 +0.2
324,514 - CCNA_00310 0.57 +0.5
324,529 + CCNA_00310 0.59 +0.5
324,562 + CCNA_00310 0.64 -0.4
324,598 + CCNA_00310 0.68 -0.5
324,612 - CCNA_00310 0.70 +1.4
324,692 + CCNA_00310 0.80 +0.2
324,752 + CCNA_00310 0.88 -0.4
324,782 - +0.2
324,799 - -0.9
324,825 + +0.0
324,830 + +0.3
324,838 - +0.4
324,838 - +0.7
325,004 + CCNA_00311 0.12 -0.2
325,004 + CCNA_00311 0.12 +0.4
325,005 - CCNA_00311 0.12 -0.3
325,076 + CCNA_00311 0.18 -0.5
325,076 + CCNA_00311 0.18 -0.6
325,089 - CCNA_00311 0.19 -0.1
325,150 - CCNA_00311 0.23 +0.1
325,193 + CCNA_00311 0.26 -0.2
325,234 + CCNA_00311 0.29 -0.8
325,256 + CCNA_00311 0.31 -0.6
325,298 + CCNA_00311 0.34 -0.3
325,312 + CCNA_00311 0.35 +0.8
325,320 - CCNA_00311 0.36 +0.1
325,446 - CCNA_00311 0.45 -0.4
325,446 - CCNA_00311 0.45 -1.4
325,521 - CCNA_00311 0.51 -0.2
325,531 - CCNA_00311 0.52 -0.4
325,625 + CCNA_00311 0.59 -2.4
325,638 - CCNA_00311 0.60 -0.0
325,702 + CCNA_00311 0.65 -0.3
325,705 - CCNA_00311 0.65 -0.2
325,758 + CCNA_00311 0.69 +0.3
325,758 + CCNA_00311 0.69 -0.0
325,766 - CCNA_00311 0.69 -0.4
325,766 - CCNA_00311 0.69 -0.6
325,801 + CCNA_00311 0.72 -1.6
325,816 - CCNA_00311 0.73 -0.3
325,840 + CCNA_00311 0.75 -1.7

Or see this region's nucleotide sequence