Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00269

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00268 and CCNA_00269 are separated by 145 nucleotidesCCNA_00269 and CCNA_00270 are separated by 126 nucleotidesCCNA_00270 and CCNA_00271 are separated by 109 nucleotides CCNA_00268: CCNA_00268 - DNA polymerase III subunit gamma/tau, at 282,130 to 283,956 _00268 CCNA_00269: CCNA_00269 - YbaB/EbfC-family DNA-binding protein, at 284,102 to 284,431 _00269 CCNA_00270: CCNA_00270 - Recombination protein recR, at 284,558 to 285,160 _00270 CCNA_00271: CCNA_00271 - hypothetical protein, at 285,270 to 285,422 _00271 Position (kb) 284 285Strain fitness (log2 ratio) -1 0 1 2at 283.921 kb on - strandat 283.921 kb on - strandat 283.927 kb on - strandat 283.938 kb on + strandat 283.947 kb on + strandat 283.964 kb on - strandat 283.981 kb on + strandat 283.981 kb on + strandat 283.987 kb on + strandat 283.988 kb on + strandat 283.988 kb on + strandat 283.988 kb on + strandat 283.988 kb on + strandat 283.989 kb on - strandat 283.996 kb on - strandat 283.996 kb on - strandat 283.996 kb on - strandat 284.015 kb on + strandat 284.017 kb on + strandat 284.027 kb on + strandat 284.035 kb on - strandat 284.050 kb on + strandat 284.050 kb on + strandat 284.050 kb on + strandat 284.050 kb on + strandat 284.050 kb on + strandat 284.058 kb on + strandat 284.058 kb on - strandat 284.058 kb on - strandat 284.058 kb on - strandat 284.058 kb on - strandat 284.131 kb on + strandat 284.131 kb on + strandat 284.131 kb on + strandat 284.131 kb on + strandat 284.139 kb on - strand, within CCNA_00269at 284.139 kb on - strand, within CCNA_00269at 284.139 kb on - strand, within CCNA_00269at 284.139 kb on - strand, within CCNA_00269at 284.167 kb on + strand, within CCNA_00269at 284.207 kb on - strand, within CCNA_00269at 284.220 kb on + strand, within CCNA_00269at 284.220 kb on + strand, within CCNA_00269at 284.253 kb on - strand, within CCNA_00269at 284.269 kb on + strand, within CCNA_00269at 284.274 kb on + strand, within CCNA_00269at 284.280 kb on + strand, within CCNA_00269at 284.286 kb on + strand, within CCNA_00269at 284.298 kb on - strand, within CCNA_00269at 284.299 kb on - strand, within CCNA_00269at 284.306 kb on + strand, within CCNA_00269at 284.311 kb on + strand, within CCNA_00269at 284.316 kb on + strand, within CCNA_00269at 284.326 kb on + strand, within CCNA_00269at 284.349 kb on + strand, within CCNA_00269at 284.349 kb on + strand, within CCNA_00269at 284.359 kb on + strand, within CCNA_00269at 284.377 kb on - strand, within CCNA_00269at 284.387 kb on - strand, within CCNA_00269at 284.401 kb on + strandat 284.425 kb on + strandat 284.425 kb on + strandat 284.441 kb on + strandat 284.441 kb on + strandat 284.454 kb on + strandat 284.462 kb on - strandat 284.465 kb on + strandat 284.470 kb on + strandat 284.470 kb on + strandat 284.472 kb on - strandat 284.472 kb on - strandat 284.472 kb on - strandat 284.472 kb on - strandat 284.472 kb on - strandat 284.472 kb on - strandat 284.478 kb on - strandat 284.479 kb on - strandat 284.482 kb on + strandat 284.487 kb on - strandat 284.490 kb on - strandat 284.500 kb on + strandat 284.505 kb on + strandat 284.505 kb on + strandat 284.505 kb on + strandat 284.508 kb on - strandat 284.508 kb on - strandat 284.513 kb on - strandat 284.562 kb on - strandat 284.619 kb on + strand, within CCNA_00270at 284.619 kb on + strand, within CCNA_00270at 284.627 kb on - strand, within CCNA_00270at 284.656 kb on - strand, within CCNA_00270at 284.656 kb on - strand, within CCNA_00270at 284.656 kb on - strand, within CCNA_00270at 284.656 kb on - strand, within CCNA_00270at 284.676 kb on - strand, within CCNA_00270at 284.676 kb on - strand, within CCNA_00270at 284.695 kb on - strand, within CCNA_00270at 284.716 kb on + strand, within CCNA_00270at 284.724 kb on - strand, within CCNA_00270at 284.731 kb on - strand, within CCNA_00270at 284.787 kb on + strand, within CCNA_00270at 284.795 kb on - strand, within CCNA_00270at 284.815 kb on + strand, within CCNA_00270at 284.816 kb on + strand, within CCNA_00270at 284.817 kb on - strand, within CCNA_00270at 284.834 kb on + strand, within CCNA_00270at 284.841 kb on - strand, within CCNA_00270at 284.841 kb on - strand, within CCNA_00270at 284.867 kb on - strand, within CCNA_00270at 284.882 kb on - strand, within CCNA_00270at 284.910 kb on + strand, within CCNA_00270at 284.910 kb on + strand, within CCNA_00270at 284.910 kb on + strand, within CCNA_00270at 284.919 kb on - strand, within CCNA_00270at 284.982 kb on + strand, within CCNA_00270at 284.987 kb on + strand, within CCNA_00270at 285.127 kb on + strandat 285.137 kb on - strandat 285.211 kb on + strandat 285.264 kb on + strandat 285.291 kb on - strand, within CCNA_00271at 285.298 kb on - strand, within CCNA_00271at 285.305 kb on + strand, within CCNA_00271at 285.329 kb on + strand, within CCNA_00271at 285.337 kb on - strand, within CCNA_00271at 285.341 kb on + strand, within CCNA_00271

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
remove
283,921 - -0.3
283,921 - -0.4
283,927 - -0.4
283,938 + -0.0
283,947 + -0.4
283,964 - +0.2
283,981 + +0.2
283,981 + +0.1
283,987 + -0.3
283,988 + +0.3
283,988 + -1.0
283,988 + -0.3
283,988 + +0.3
283,989 - -0.1
283,996 - +0.1
283,996 - -0.4
283,996 - +0.3
284,015 + +0.1
284,017 + -0.4
284,027 + -0.0
284,035 - +0.6
284,050 + -0.4
284,050 + -0.4
284,050 + +0.0
284,050 + +0.9
284,050 + +0.4
284,058 + +0.3
284,058 - +0.1
284,058 - -0.4
284,058 - -0.7
284,058 - -0.5
284,131 + +0.1
284,131 + -0.8
284,131 + -0.7
284,131 + -0.4
284,139 - CCNA_00269 0.11 +0.2
284,139 - CCNA_00269 0.11 -0.1
284,139 - CCNA_00269 0.11 +0.2
284,139 - CCNA_00269 0.11 -0.1
284,167 + CCNA_00269 0.20 +0.5
284,207 - CCNA_00269 0.32 -0.9
284,220 + CCNA_00269 0.36 +0.2
284,220 + CCNA_00269 0.36 +0.6
284,253 - CCNA_00269 0.46 -1.2
284,269 + CCNA_00269 0.51 -0.3
284,274 + CCNA_00269 0.52 +0.0
284,280 + CCNA_00269 0.54 -0.6
284,286 + CCNA_00269 0.56 -0.0
284,298 - CCNA_00269 0.59 -0.2
284,299 - CCNA_00269 0.60 -0.9
284,306 + CCNA_00269 0.62 -0.4
284,311 + CCNA_00269 0.63 +0.1
284,316 + CCNA_00269 0.65 +0.3
284,326 + CCNA_00269 0.68 -0.1
284,349 + CCNA_00269 0.75 +1.8
284,349 + CCNA_00269 0.75 +0.8
284,359 + CCNA_00269 0.78 -0.5
284,377 - CCNA_00269 0.83 -0.1
284,387 - CCNA_00269 0.86 +0.4
284,401 + +0.7
284,425 + +0.0
284,425 + +0.6
284,441 + +0.3
284,441 + +0.5
284,454 + +0.1
284,462 - -0.7
284,465 + +0.4
284,470 + +0.1
284,470 + -0.3
284,472 - -0.9
284,472 - -1.2
284,472 - +0.7
284,472 - -0.4
284,472 - -0.6
284,472 - -1.7
284,478 - +0.6
284,479 - -0.3
284,482 + -0.4
284,487 - +0.3
284,490 - +0.3
284,500 + +0.2
284,505 + +0.4
284,505 + +0.8
284,505 + +0.6
284,508 - -0.2
284,508 - -0.0
284,513 - -0.0
284,562 - -0.1
284,619 + CCNA_00270 0.10 -0.6
284,619 + CCNA_00270 0.10 +1.0
284,627 - CCNA_00270 0.11 -1.3
284,656 - CCNA_00270 0.16 +0.1
284,656 - CCNA_00270 0.16 -1.5
284,656 - CCNA_00270 0.16 +0.4
284,656 - CCNA_00270 0.16 -1.1
284,676 - CCNA_00270 0.20 -0.7
284,676 - CCNA_00270 0.20 +0.5
284,695 - CCNA_00270 0.23 -0.5
284,716 + CCNA_00270 0.26 +0.2
284,724 - CCNA_00270 0.28 +0.8
284,731 - CCNA_00270 0.29 -0.8
284,787 + CCNA_00270 0.38 -0.2
284,795 - CCNA_00270 0.39 -0.1
284,815 + CCNA_00270 0.43 +0.1
284,816 + CCNA_00270 0.43 +0.5
284,817 - CCNA_00270 0.43 +0.0
284,834 + CCNA_00270 0.46 -0.5
284,841 - CCNA_00270 0.47 -0.3
284,841 - CCNA_00270 0.47 +0.8
284,867 - CCNA_00270 0.51 +0.3
284,882 - CCNA_00270 0.54 -0.5
284,910 + CCNA_00270 0.58 -0.4
284,910 + CCNA_00270 0.58 -0.2
284,910 + CCNA_00270 0.58 +0.2
284,919 - CCNA_00270 0.60 -0.3
284,982 + CCNA_00270 0.70 +0.3
284,987 + CCNA_00270 0.71 -1.3
285,127 + -0.1
285,137 - -0.1
285,211 + -0.3
285,264 + +0.3
285,291 - CCNA_00271 0.14 +0.4
285,298 - CCNA_00271 0.18 +0.1
285,305 + CCNA_00271 0.23 +0.1
285,329 + CCNA_00271 0.39 -0.6
285,337 - CCNA_00271 0.44 -0.4
285,341 + CCNA_00271 0.46 +0.9

Or see this region's nucleotide sequence