Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00162

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00161 and CCNA_00162 are separated by 71 nucleotidesCCNA_00162 and CCNA_00163 are separated by 46 nucleotides CCNA_00161: CCNA_00161 - hypothetical protein, at 170,951 to 171,577 _00161 CCNA_00162: CCNA_00162 - hypothetical protein, at 171,649 to 172,917 _00162 CCNA_00163: CCNA_00163 - exopolysaccharide transport family protein, at 172,964 to 175,183 _00163 Position (kb) 171 172 173Strain fitness (log2 ratio) -2 -1 0 1at 170.664 kb on + strandat 170.672 kb on - strandat 170.677 kb on - strandat 170.790 kb on + strandat 170.790 kb on + strandat 170.790 kb on + strandat 170.868 kb on - strandat 170.910 kb on - strandat 170.910 kb on - strandat 170.963 kb on + strandat 170.978 kb on - strandat 171.022 kb on + strand, within CCNA_00161at 171.032 kb on + strand, within CCNA_00161at 171.051 kb on - strand, within CCNA_00161at 171.179 kb on - strand, within CCNA_00161at 171.182 kb on + strand, within CCNA_00161at 171.256 kb on + strand, within CCNA_00161at 171.266 kb on + strand, within CCNA_00161at 171.299 kb on + strand, within CCNA_00161at 171.349 kb on + strand, within CCNA_00161at 171.364 kb on + strand, within CCNA_00161at 171.446 kb on - strand, within CCNA_00161at 171.525 kb on + strandat 171.525 kb on + strandat 171.705 kb on + strandat 171.721 kb on + strandat 171.783 kb on + strand, within CCNA_00162at 171.783 kb on + strand, within CCNA_00162at 171.839 kb on - strand, within CCNA_00162at 171.861 kb on + strand, within CCNA_00162at 171.887 kb on - strand, within CCNA_00162at 171.905 kb on - strand, within CCNA_00162at 171.943 kb on + strand, within CCNA_00162at 172.012 kb on + strand, within CCNA_00162at 172.017 kb on + strand, within CCNA_00162at 172.038 kb on - strand, within CCNA_00162at 172.058 kb on + strand, within CCNA_00162at 172.058 kb on + strand, within CCNA_00162at 172.058 kb on + strand, within CCNA_00162at 172.078 kb on + strand, within CCNA_00162at 172.078 kb on + strand, within CCNA_00162at 172.078 kb on + strand, within CCNA_00162at 172.081 kb on - strand, within CCNA_00162at 172.086 kb on - strand, within CCNA_00162at 172.086 kb on - strand, within CCNA_00162at 172.086 kb on - strand, within CCNA_00162at 172.086 kb on - strand, within CCNA_00162at 172.086 kb on - strand, within CCNA_00162at 172.111 kb on + strand, within CCNA_00162at 172.188 kb on + strand, within CCNA_00162at 172.216 kb on + strand, within CCNA_00162at 172.262 kb on + strand, within CCNA_00162at 172.281 kb on + strand, within CCNA_00162at 172.285 kb on - strand, within CCNA_00162at 172.493 kb on + strand, within CCNA_00162at 172.551 kb on + strand, within CCNA_00162at 172.704 kb on - strand, within CCNA_00162at 172.770 kb on + strand, within CCNA_00162at 172.881 kb on + strandat 172.889 kb on - strandat 172.914 kb on - strandat 172.961 kb on + strandat 172.964 kb on - strandat 173.084 kb on - strandat 173.155 kb on + strandat 173.155 kb on + strandat 173.191 kb on + strand, within CCNA_00163at 173.199 kb on - strand, within CCNA_00163at 173.201 kb on + strand, within CCNA_00163at 173.245 kb on + strand, within CCNA_00163at 173.268 kb on + strand, within CCNA_00163at 173.332 kb on + strand, within CCNA_00163at 173.338 kb on - strand, within CCNA_00163at 173.340 kb on - strand, within CCNA_00163at 173.359 kb on + strand, within CCNA_00163at 173.379 kb on + strand, within CCNA_00163at 173.465 kb on - strand, within CCNA_00163at 173.465 kb on - strand, within CCNA_00163at 173.477 kb on + strand, within CCNA_00163at 173.477 kb on + strand, within CCNA_00163at 173.482 kb on + strand, within CCNA_00163at 173.485 kb on - strand, within CCNA_00163at 173.485 kb on - strand, within CCNA_00163at 173.499 kb on - strand, within CCNA_00163at 173.512 kb on + strand, within CCNA_00163at 173.516 kb on + strand, within CCNA_00163at 173.620 kb on + strand, within CCNA_00163at 173.658 kb on - strand, within CCNA_00163at 173.715 kb on + strand, within CCNA_00163at 173.720 kb on + strand, within CCNA_00163at 173.753 kb on - strand, within CCNA_00163at 173.798 kb on + strand, within CCNA_00163at 173.806 kb on - strand, within CCNA_00163at 173.806 kb on - strand, within CCNA_00163at 173.830 kb on + strand, within CCNA_00163at 173.853 kb on - strand, within CCNA_00163

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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170,664 + +0.0
170,672 - +1.2
170,677 - -0.4
170,790 + +0.3
170,790 + +0.4
170,790 + -0.1
170,868 - +0.8
170,910 - +0.2
170,910 - +1.4
170,963 + +0.4
170,978 - +0.2
171,022 + CCNA_00161 0.11 +0.2
171,032 + CCNA_00161 0.13 -1.2
171,051 - CCNA_00161 0.16 -0.4
171,179 - CCNA_00161 0.36 +0.4
171,182 + CCNA_00161 0.37 +0.2
171,256 + CCNA_00161 0.49 -0.1
171,266 + CCNA_00161 0.50 -0.3
171,299 + CCNA_00161 0.56 +0.6
171,349 + CCNA_00161 0.63 +0.4
171,364 + CCNA_00161 0.66 -0.0
171,446 - CCNA_00161 0.79 -1.5
171,525 + +0.7
171,525 + +0.3
171,705 + +0.5
171,721 + +0.3
171,783 + CCNA_00162 0.11 +0.1
171,783 + CCNA_00162 0.11 +0.1
171,839 - CCNA_00162 0.15 -1.0
171,861 + CCNA_00162 0.17 +0.0
171,887 - CCNA_00162 0.19 -0.9
171,905 - CCNA_00162 0.20 +0.2
171,943 + CCNA_00162 0.23 +0.3
172,012 + CCNA_00162 0.29 +0.1
172,017 + CCNA_00162 0.29 -0.0
172,038 - CCNA_00162 0.31 -0.4
172,058 + CCNA_00162 0.32 -0.2
172,058 + CCNA_00162 0.32 +0.3
172,058 + CCNA_00162 0.32 +0.3
172,078 + CCNA_00162 0.34 +0.6
172,078 + CCNA_00162 0.34 +0.0
172,078 + CCNA_00162 0.34 -0.1
172,081 - CCNA_00162 0.34 -0.9
172,086 - CCNA_00162 0.34 -0.6
172,086 - CCNA_00162 0.34 +0.2
172,086 - CCNA_00162 0.34 -2.3
172,086 - CCNA_00162 0.34 -0.4
172,086 - CCNA_00162 0.34 +0.2
172,111 + CCNA_00162 0.36 +0.2
172,188 + CCNA_00162 0.42 +0.1
172,216 + CCNA_00162 0.45 +0.8
172,262 + CCNA_00162 0.48 +0.3
172,281 + CCNA_00162 0.50 +0.2
172,285 - CCNA_00162 0.50 -0.2
172,493 + CCNA_00162 0.67 -0.3
172,551 + CCNA_00162 0.71 +0.4
172,704 - CCNA_00162 0.83 -0.5
172,770 + CCNA_00162 0.88 +0.2
172,881 + +0.2
172,889 - -1.0
172,914 - -0.4
172,961 + +0.4
172,964 - -2.5
173,084 - -0.2
173,155 + +0.1
173,155 + +0.4
173,191 + CCNA_00163 0.10 +0.1
173,199 - CCNA_00163 0.11 -0.2
173,201 + CCNA_00163 0.11 -0.3
173,245 + CCNA_00163 0.13 +0.6
173,268 + CCNA_00163 0.14 +0.8
173,332 + CCNA_00163 0.17 +1.1
173,338 - CCNA_00163 0.17 -0.6
173,340 - CCNA_00163 0.17 -1.2
173,359 + CCNA_00163 0.18 +0.7
173,379 + CCNA_00163 0.19 +0.4
173,465 - CCNA_00163 0.23 -0.0
173,465 - CCNA_00163 0.23 -0.7
173,477 + CCNA_00163 0.23 +0.3
173,477 + CCNA_00163 0.23 +0.1
173,482 + CCNA_00163 0.23 +0.3
173,485 - CCNA_00163 0.23 -2.7
173,485 - CCNA_00163 0.23 -0.0
173,499 - CCNA_00163 0.24 -1.3
173,512 + CCNA_00163 0.25 +0.3
173,516 + CCNA_00163 0.25 -0.4
173,620 + CCNA_00163 0.30 +0.6
173,658 - CCNA_00163 0.31 -0.4
173,715 + CCNA_00163 0.34 -1.5
173,720 + CCNA_00163 0.34 +0.7
173,753 - CCNA_00163 0.36 -1.2
173,798 + CCNA_00163 0.38 +0.6
173,806 - CCNA_00163 0.38 +0.6
173,806 - CCNA_00163 0.38 -0.9
173,830 + CCNA_00163 0.39 +0.4
173,853 - CCNA_00163 0.40 -1.6

Or see this region's nucleotide sequence