Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00063

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00062 and CCNA_03913 are separated by 78 nucleotidesCCNA_03913 and CCNA_00063 are separated by 41 nucleotidesCCNA_00063 and CCNA_00064 are separated by 239 nucleotides CCNA_00062: CCNA_00062 - tryptophanyl-tRNA synthetase, at 63,327 to 64,361 _00062 CCNA_03913: CCNA_03913 - hypothetical protein, at 64,440 to 64,487 _03913 CCNA_00063: CCNA_00063 - MviN-family integral membrane protein, at 64,529 to 66,091 _00063 CCNA_00064: CCNA_00064 - methyl-accepting chemotaxis protein, at 66,331 to 68,127 _00064 Position (kb) 64 65 66 67Strain fitness (log2 ratio) -2 -1 0 1 2at 64.356 kb on + strandat 64.364 kb on - strandat 64.437 kb on + strandat 64.445 kb on - strand, within CCNA_03913at 64.450 kb on - strand, within CCNA_03913at 64.450 kb on - strand, within CCNA_03913at 64.502 kb on + strandat 64.510 kb on - strandat 64.512 kb on + strandat 64.515 kb on - strandat 64.515 kb on - strandat 64.517 kb on + strandat 64.520 kb on - strandat 64.520 kb on - strandat 64.550 kb on + strandat 64.552 kb on + strandat 64.557 kb on + strandat 64.557 kb on + strandat 64.565 kb on - strandat 64.565 kb on - strandat 64.565 kb on - strandat 64.565 kb on - strandat 64.565 kb on - strandat 64.573 kb on + strandat 64.581 kb on - strandat 64.605 kb on + strandat 64.605 kb on + strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.649 kb on + strandat 64.660 kb on + strandat 64.661 kb on + strandat 64.668 kb on - strandat 64.696 kb on - strand, within CCNA_00063at 66.114 kb on + strandat 66.145 kb on + strandat 66.153 kb on - strandat 66.180 kb on + strandat 66.180 kb on + strandat 66.188 kb on + strandat 66.188 kb on - strandat 66.189 kb on - strandat 66.207 kb on - strandat 66.411 kb on + strandat 66.411 kb on + strandat 66.411 kb on + strandat 66.436 kb on - strandat 66.449 kb on + strandat 66.471 kb on - strandat 66.496 kb on - strandat 66.588 kb on + strand, within CCNA_00064at 66.591 kb on - strand, within CCNA_00064at 66.596 kb on - strand, within CCNA_00064at 66.620 kb on + strand, within CCNA_00064at 66.622 kb on + strand, within CCNA_00064at 66.622 kb on + strand, within CCNA_00064at 66.624 kb on + strand, within CCNA_00064at 66.632 kb on - strand, within CCNA_00064at 66.632 kb on - strand, within CCNA_00064at 66.644 kb on + strand, within CCNA_00064at 66.644 kb on + strand, within CCNA_00064at 66.656 kb on + strand, within CCNA_00064at 66.666 kb on + strand, within CCNA_00064at 66.666 kb on - strand, within CCNA_00064at 66.674 kb on - strand, within CCNA_00064at 66.680 kb on + strand, within CCNA_00064at 66.683 kb on - strand, within CCNA_00064at 66.690 kb on + strand, within CCNA_00064at 66.720 kb on + strand, within CCNA_00064at 66.720 kb on + strand, within CCNA_00064at 66.720 kb on + strand, within CCNA_00064at 66.720 kb on + strand, within CCNA_00064at 66.728 kb on - strand, within CCNA_00064at 66.728 kb on - strand, within CCNA_00064at 66.728 kb on - strand, within CCNA_00064at 66.728 kb on - strand, within CCNA_00064at 66.728 kb on - strand, within CCNA_00064at 66.784 kb on - strand, within CCNA_00064at 66.786 kb on - strand, within CCNA_00064at 66.828 kb on - strand, within CCNA_00064at 66.834 kb on + strand, within CCNA_00064at 66.834 kb on + strand, within CCNA_00064at 66.870 kb on - strand, within CCNA_00064at 66.873 kb on + strand, within CCNA_00064at 66.885 kb on - strand, within CCNA_00064at 66.927 kb on - strand, within CCNA_00064at 66.927 kb on - strand, within CCNA_00064at 66.927 kb on - strand, within CCNA_00064at 66.968 kb on + strand, within CCNA_00064at 66.985 kb on - strand, within CCNA_00064

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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64,356 + -0.0
64,364 - +0.9
64,437 + -0.5
64,445 - CCNA_03913 0.10 +0.7
64,450 - CCNA_03913 0.21 +0.4
64,450 - CCNA_03913 0.21 -0.0
64,502 + +0.6
64,510 - -1.2
64,512 + +0.2
64,515 - +0.7
64,515 - -0.0
64,517 + +0.4
64,520 - -0.2
64,520 - +2.1
64,550 + -0.2
64,552 + -1.1
64,557 + -0.8
64,557 + -0.5
64,565 - +0.6
64,565 - +0.1
64,565 - +1.2
64,565 - +0.9
64,565 - +0.6
64,573 + +0.7
64,581 - +0.8
64,605 + -0.2
64,605 + -0.4
64,613 - +0.2
64,613 - +0.8
64,613 - -0.7
64,613 - +1.0
64,613 - +0.6
64,613 - +0.5
64,613 - +0.3
64,613 - -0.1
64,613 - -0.5
64,649 + -1.8
64,660 + +0.2
64,661 + -0.2
64,668 - +0.2
64,696 - CCNA_00063 0.11 +0.7
66,114 + +0.5
66,145 + +0.3
66,153 - -0.0
66,180 + -0.4
66,180 + +0.0
66,188 + +1.0
66,188 - +0.2
66,189 - +1.4
66,207 - -0.1
66,411 + -0.2
66,411 + +0.4
66,411 + +0.1
66,436 - +0.5
66,449 + -0.8
66,471 - +0.3
66,496 - +0.2
66,588 + CCNA_00064 0.14 +0.8
66,591 - CCNA_00064 0.14 -0.2
66,596 - CCNA_00064 0.15 +0.2
66,620 + CCNA_00064 0.16 +0.1
66,622 + CCNA_00064 0.16 -1.1
66,622 + CCNA_00064 0.16 +0.2
66,624 + CCNA_00064 0.16 +0.2
66,632 - CCNA_00064 0.17 -0.0
66,632 - CCNA_00064 0.17 +0.0
66,644 + CCNA_00064 0.17 +0.8
66,644 + CCNA_00064 0.17 +0.6
66,656 + CCNA_00064 0.18 -0.2
66,666 + CCNA_00064 0.19 +0.7
66,666 - CCNA_00064 0.19 -0.4
66,674 - CCNA_00064 0.19 -1.3
66,680 + CCNA_00064 0.19 +0.8
66,683 - CCNA_00064 0.20 +0.6
66,690 + CCNA_00064 0.20 +0.8
66,720 + CCNA_00064 0.22 -0.1
66,720 + CCNA_00064 0.22 -0.9
66,720 + CCNA_00064 0.22 -0.2
66,720 + CCNA_00064 0.22 -0.4
66,728 - CCNA_00064 0.22 +0.3
66,728 - CCNA_00064 0.22 +0.1
66,728 - CCNA_00064 0.22 +0.2
66,728 - CCNA_00064 0.22 -0.4
66,728 - CCNA_00064 0.22 -0.0
66,784 - CCNA_00064 0.25 -1.6
66,786 - CCNA_00064 0.25 +0.6
66,828 - CCNA_00064 0.28 -0.8
66,834 + CCNA_00064 0.28 +0.4
66,834 + CCNA_00064 0.28 -0.3
66,870 - CCNA_00064 0.30 -0.2
66,873 + CCNA_00064 0.30 -0.5
66,885 - CCNA_00064 0.31 -0.3
66,927 - CCNA_00064 0.33 -0.4
66,927 - CCNA_00064 0.33 +0.3
66,927 - CCNA_00064 0.33 -1.0
66,968 + CCNA_00064 0.35 +0.7
66,985 - CCNA_00064 0.36 +0.7

Or see this region's nucleotide sequence