Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00053

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00051 and CCNA_00052 are separated by 8 nucleotidesCCNA_00052 and CCNA_00053 are separated by 37 nucleotidesCCNA_00053 and CCNA_00054 overlap by 4 nucleotides CCNA_00051: CCNA_00051 - magnesium and cobalt efflux protein CorC, at 54,296 to 55,222 _00051 CCNA_00052: CCNA_00052 - metal-dependent hydrolase/metalloproteinase, at 55,231 to 55,686 _00052 CCNA_00053: CCNA_00053 - phosphate starvation-inducible protein PhoH, at 55,724 to 56,668 _00053 CCNA_00054: CCNA_00054 - tRNA 2-methylthioadenosine synthase, at 56,665 to 58,011 _00054 Position (kb) 55 56 57Strain fitness (log2 ratio) -2 -1 0 1 2at 54.757 kb on - strand, within CCNA_00051at 54.757 kb on - strand, within CCNA_00051at 54.774 kb on - strand, within CCNA_00051at 54.784 kb on + strand, within CCNA_00051at 54.793 kb on - strand, within CCNA_00051at 54.795 kb on + strand, within CCNA_00051at 54.814 kb on + strand, within CCNA_00051at 54.870 kb on + strand, within CCNA_00051at 54.878 kb on - strand, within CCNA_00051at 54.907 kb on - strand, within CCNA_00051at 55.011 kb on + strand, within CCNA_00051at 55.084 kb on - strand, within CCNA_00051at 55.196 kb on + strandat 55.208 kb on - strandat 55.219 kb on + strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.260 kb on - strandat 55.261 kb on - strandat 55.270 kb on + strandat 55.278 kb on - strand, within CCNA_00052at 55.723 kb on - strandat 55.728 kb on - strandat 55.728 kb on - strandat 55.736 kb on + strandat 55.736 kb on + strandat 55.744 kb on - strandat 55.744 kb on - strandat 55.763 kb on - strandat 55.830 kb on + strand, within CCNA_00053at 55.830 kb on + strand, within CCNA_00053at 55.847 kb on + strand, within CCNA_00053at 55.867 kb on + strand, within CCNA_00053at 55.875 kb on - strand, within CCNA_00053at 55.875 kb on - strand, within CCNA_00053at 55.889 kb on - strand, within CCNA_00053at 55.894 kb on - strand, within CCNA_00053at 55.896 kb on + strand, within CCNA_00053at 55.900 kb on + strand, within CCNA_00053at 55.900 kb on + strand, within CCNA_00053at 55.946 kb on + strand, within CCNA_00053at 55.946 kb on + strand, within CCNA_00053at 55.946 kb on + strand, within CCNA_00053at 55.946 kb on + strand, within CCNA_00053at 55.951 kb on + strand, within CCNA_00053at 55.951 kb on + strand, within CCNA_00053at 55.977 kb on - strand, within CCNA_00053at 55.979 kb on + strand, within CCNA_00053at 55.979 kb on + strand, within CCNA_00053at 55.979 kb on + strand, within CCNA_00053at 55.979 kb on + strand, within CCNA_00053at 55.979 kb on + strand, within CCNA_00053at 55.979 kb on + strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 56.000 kb on + strand, within CCNA_00053at 56.015 kb on - strand, within CCNA_00053at 56.017 kb on + strand, within CCNA_00053at 56.019 kb on + strand, within CCNA_00053at 56.019 kb on - strand, within CCNA_00053at 56.052 kb on - strand, within CCNA_00053at 56.052 kb on - strand, within CCNA_00053at 56.102 kb on - strand, within CCNA_00053at 56.105 kb on + strand, within CCNA_00053at 56.115 kb on + strand, within CCNA_00053at 56.237 kb on - strand, within CCNA_00053at 56.298 kb on - strand, within CCNA_00053at 56.327 kb on + strand, within CCNA_00053at 56.378 kb on - strand, within CCNA_00053at 56.393 kb on + strand, within CCNA_00053at 56.395 kb on - strand, within CCNA_00053at 56.405 kb on + strand, within CCNA_00053at 56.408 kb on + strand, within CCNA_00053at 56.413 kb on - strand, within CCNA_00053at 56.442 kb on + strand, within CCNA_00053at 56.445 kb on - strand, within CCNA_00053at 56.483 kb on + strand, within CCNA_00053at 56.491 kb on - strand, within CCNA_00053at 56.507 kb on + strand, within CCNA_00053at 56.541 kb on - strand, within CCNA_00053at 56.566 kb on + strand, within CCNA_00053at 56.574 kb on - strandat 56.577 kb on + strandat 56.595 kb on - strandat 56.650 kb on + strandat 56.658 kb on - strandat 56.658 kb on - strandat 56.682 kb on - strandat 56.684 kb on + strandat 56.687 kb on - strandat 56.752 kb on - strandat 56.780 kb on + strandat 56.787 kb on + strandat 56.795 kb on - strandat 56.811 kb on + strand, within CCNA_00054at 56.814 kb on - strand, within CCNA_00054at 56.846 kb on + strand, within CCNA_00054at 56.904 kb on + strand, within CCNA_00054at 56.912 kb on - strand, within CCNA_00054at 56.927 kb on + strand, within CCNA_00054at 56.927 kb on + strand, within CCNA_00054at 56.927 kb on + strand, within CCNA_00054at 56.927 kb on + strand, within CCNA_00054at 56.927 kb on + strand, within CCNA_00054at 56.935 kb on - strand, within CCNA_00054at 56.935 kb on - strand, within CCNA_00054at 56.935 kb on - strand, within CCNA_00054at 56.935 kb on - strand, within CCNA_00054at 56.935 kb on - strand, within CCNA_00054at 56.935 kb on - strand, within CCNA_00054at 56.935 kb on - strand, within CCNA_00054at 56.953 kb on + strand, within CCNA_00054at 56.992 kb on - strand, within CCNA_00054at 57.033 kb on + strand, within CCNA_00054at 57.041 kb on - strand, within CCNA_00054at 57.041 kb on - strand, within CCNA_00054at 57.042 kb on - strand, within CCNA_00054at 57.138 kb on + strand, within CCNA_00054at 57.138 kb on + strand, within CCNA_00054at 57.138 kb on + strand, within CCNA_00054at 57.146 kb on - strand, within CCNA_00054at 57.146 kb on - strand, within CCNA_00054at 57.146 kb on - strand, within CCNA_00054at 57.146 kb on - strand, within CCNA_00054at 57.146 kb on - strand, within CCNA_00054at 57.146 kb on - strand, within CCNA_00054at 57.146 kb on - strand, within CCNA_00054at 57.148 kb on + strand, within CCNA_00054at 57.148 kb on + strand, within CCNA_00054at 57.148 kb on + strand, within CCNA_00054at 57.148 kb on + strand, within CCNA_00054at 57.148 kb on + strand, within CCNA_00054at 57.148 kb on + strand, within CCNA_00054at 57.148 kb on + strand, within CCNA_00054at 57.151 kb on - strand, within CCNA_00054at 57.156 kb on - strand, within CCNA_00054at 57.156 kb on - strand, within CCNA_00054at 57.156 kb on - strand, within CCNA_00054at 57.156 kb on - strand, within CCNA_00054at 57.156 kb on - strand, within CCNA_00054at 57.156 kb on - strand, within CCNA_00054at 57.156 kb on - strand, within CCNA_00054at 57.156 kb on - strand, within CCNA_00054at 57.156 kb on - strand, within CCNA_00054at 57.156 kb on - strand, within CCNA_00054at 57.156 kb on - strand, within CCNA_00054at 57.156 kb on - strand, within CCNA_00054at 57.169 kb on + strand, within CCNA_00054at 57.177 kb on - strand, within CCNA_00054at 57.177 kb on - strand, within CCNA_00054at 57.186 kb on + strand, within CCNA_00054at 57.213 kb on + strand, within CCNA_00054at 57.328 kb on - strand, within CCNA_00054at 57.346 kb on + strand, within CCNA_00054at 57.351 kb on + strand, within CCNA_00054at 57.354 kb on - strand, within CCNA_00054at 57.360 kb on - strand, within CCNA_00054at 57.365 kb on - strand, within CCNA_00054at 57.375 kb on - strand, within CCNA_00054at 57.402 kb on - strand, within CCNA_00054at 57.411 kb on + strand, within CCNA_00054at 57.419 kb on - strand, within CCNA_00054at 57.419 kb on - strand, within CCNA_00054at 57.428 kb on + strand, within CCNA_00054at 57.428 kb on + strand, within CCNA_00054at 57.448 kb on + strand, within CCNA_00054at 57.451 kb on - strand, within CCNA_00054at 57.511 kb on - strand, within CCNA_00054at 57.511 kb on - strand, within CCNA_00054at 57.511 kb on - strand, within CCNA_00054at 57.656 kb on + strand, within CCNA_00054at 57.660 kb on + strand, within CCNA_00054at 57.668 kb on - strand, within CCNA_00054

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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54,757 - CCNA_00051 0.50 +0.2
54,757 - CCNA_00051 0.50 +1.6
54,774 - CCNA_00051 0.52 -0.4
54,784 + CCNA_00051 0.53 -0.9
54,793 - CCNA_00051 0.54 -1.3
54,795 + CCNA_00051 0.54 +1.0
54,814 + CCNA_00051 0.56 +1.0
54,870 + CCNA_00051 0.62 +1.2
54,878 - CCNA_00051 0.63 +0.6
54,907 - CCNA_00051 0.66 -0.3
55,011 + CCNA_00051 0.77 -0.2
55,084 - CCNA_00051 0.85 +1.0
55,196 + +0.7
55,208 - +1.2
55,219 + -0.2
55,224 + -2.6
55,224 + +0.9
55,224 + +1.6
55,224 + -1.3
55,224 + +0.8
55,232 - +0.6
55,232 - +0.2
55,232 - -0.1
55,232 - +0.5
55,232 - +0.9
55,260 - +0.2
55,261 - +2.3
55,270 + -0.2
55,278 - CCNA_00052 0.10 -0.3
55,723 - +1.1
55,728 - +0.6
55,728 - +0.6
55,736 + -0.6
55,736 + +1.2
55,744 - +1.4
55,744 - -0.3
55,763 - +0.8
55,830 + CCNA_00053 0.11 +0.1
55,830 + CCNA_00053 0.11 +0.5
55,847 + CCNA_00053 0.13 +1.2
55,867 + CCNA_00053 0.15 +1.0
55,875 - CCNA_00053 0.16 +0.4
55,875 - CCNA_00053 0.16 +0.7
55,889 - CCNA_00053 0.17 +0.2
55,894 - CCNA_00053 0.18 +0.5
55,896 + CCNA_00053 0.18 -0.4
55,900 + CCNA_00053 0.19 +2.3
55,900 + CCNA_00053 0.19 -0.7
55,946 + CCNA_00053 0.23 -1.1
55,946 + CCNA_00053 0.23 +0.6
55,946 + CCNA_00053 0.23 +0.4
55,946 + CCNA_00053 0.23 -1.4
55,951 + CCNA_00053 0.24 -0.7
55,951 + CCNA_00053 0.24 +0.1
55,977 - CCNA_00053 0.27 +0.5
55,979 + CCNA_00053 0.27 +0.6
55,979 + CCNA_00053 0.27 +0.4
55,979 + CCNA_00053 0.27 +0.6
55,979 + CCNA_00053 0.27 -0.1
55,979 + CCNA_00053 0.27 -0.1
55,979 + CCNA_00053 0.27 -1.1
55,987 - CCNA_00053 0.28 -0.2
55,987 - CCNA_00053 0.28 +0.2
55,987 - CCNA_00053 0.28 +1.8
55,987 - CCNA_00053 0.28 +1.2
55,987 - CCNA_00053 0.28 -0.5
55,987 - CCNA_00053 0.28 +0.4
56,000 + CCNA_00053 0.29 +0.7
56,015 - CCNA_00053 0.31 +0.5
56,017 + CCNA_00053 0.31 +0.5
56,019 + CCNA_00053 0.31 -1.2
56,019 - CCNA_00053 0.31 +0.1
56,052 - CCNA_00053 0.35 +0.3
56,052 - CCNA_00053 0.35 +0.2
56,102 - CCNA_00053 0.40 +0.8
56,105 + CCNA_00053 0.40 -0.9
56,115 + CCNA_00053 0.41 -0.0
56,237 - CCNA_00053 0.54 +0.4
56,298 - CCNA_00053 0.61 +0.1
56,327 + CCNA_00053 0.64 -0.4
56,378 - CCNA_00053 0.69 +0.5
56,393 + CCNA_00053 0.71 +1.6
56,395 - CCNA_00053 0.71 +0.4
56,405 + CCNA_00053 0.72 +0.8
56,408 + CCNA_00053 0.72 +0.7
56,413 - CCNA_00053 0.73 +0.6
56,442 + CCNA_00053 0.76 +0.9
56,445 - CCNA_00053 0.76 +0.2
56,483 + CCNA_00053 0.80 +0.2
56,491 - CCNA_00053 0.81 +0.5
56,507 + CCNA_00053 0.83 +0.1
56,541 - CCNA_00053 0.86 +0.5
56,566 + CCNA_00053 0.89 +0.4
56,574 - -0.2
56,577 + +0.6
56,595 - +0.5
56,650 + -0.6
56,658 - +0.0
56,658 - +0.6
56,682 - +0.4
56,684 + +1.3
56,687 - +1.4
56,752 - +1.2
56,780 + +0.1
56,787 + -0.0
56,795 - +1.0
56,811 + CCNA_00054 0.11 -0.9
56,814 - CCNA_00054 0.11 +0.1
56,846 + CCNA_00054 0.13 -0.8
56,904 + CCNA_00054 0.18 -0.2
56,912 - CCNA_00054 0.18 -0.1
56,927 + CCNA_00054 0.19 +0.0
56,927 + CCNA_00054 0.19 -1.4
56,927 + CCNA_00054 0.19 +0.4
56,927 + CCNA_00054 0.19 +1.8
56,927 + CCNA_00054 0.19 +0.2
56,935 - CCNA_00054 0.20 -0.2
56,935 - CCNA_00054 0.20 +0.4
56,935 - CCNA_00054 0.20 +1.0
56,935 - CCNA_00054 0.20 +0.6
56,935 - CCNA_00054 0.20 +0.4
56,935 - CCNA_00054 0.20 +1.0
56,935 - CCNA_00054 0.20 +1.0
56,953 + CCNA_00054 0.21 -0.4
56,992 - CCNA_00054 0.24 +0.6
57,033 + CCNA_00054 0.27 -0.4
57,041 - CCNA_00054 0.28 -0.4
57,041 - CCNA_00054 0.28 +1.7
57,042 - CCNA_00054 0.28 -0.6
57,138 + CCNA_00054 0.35 -1.0
57,138 + CCNA_00054 0.35 -1.0
57,138 + CCNA_00054 0.35 -0.4
57,146 - CCNA_00054 0.36 +0.4
57,146 - CCNA_00054 0.36 -0.8
57,146 - CCNA_00054 0.36 +1.1
57,146 - CCNA_00054 0.36 +0.2
57,146 - CCNA_00054 0.36 +1.7
57,146 - CCNA_00054 0.36 +0.0
57,146 - CCNA_00054 0.36 +0.6
57,148 + CCNA_00054 0.36 -0.0
57,148 + CCNA_00054 0.36 +0.8
57,148 + CCNA_00054 0.36 -0.8
57,148 + CCNA_00054 0.36 -1.5
57,148 + CCNA_00054 0.36 +0.6
57,148 + CCNA_00054 0.36 -0.2
57,148 + CCNA_00054 0.36 +0.6
57,151 - CCNA_00054 0.36 -0.2
57,156 - CCNA_00054 0.36 +0.3
57,156 - CCNA_00054 0.36 +0.8
57,156 - CCNA_00054 0.36 +2.0
57,156 - CCNA_00054 0.36 +1.4
57,156 - CCNA_00054 0.36 +0.5
57,156 - CCNA_00054 0.36 +1.6
57,156 - CCNA_00054 0.36 +1.4
57,156 - CCNA_00054 0.36 +0.4
57,156 - CCNA_00054 0.36 +0.9
57,156 - CCNA_00054 0.36 +0.4
57,156 - CCNA_00054 0.36 -0.3
57,156 - CCNA_00054 0.36 -0.7
57,169 + CCNA_00054 0.37 -0.6
57,177 - CCNA_00054 0.38 +0.2
57,177 - CCNA_00054 0.38 +0.8
57,186 + CCNA_00054 0.39 -0.0
57,213 + CCNA_00054 0.41 +1.4
57,328 - CCNA_00054 0.49 +0.8
57,346 + CCNA_00054 0.51 -0.3
57,351 + CCNA_00054 0.51 -0.3
57,354 - CCNA_00054 0.51 +1.6
57,360 - CCNA_00054 0.52 -1.3
57,365 - CCNA_00054 0.52 +0.7
57,375 - CCNA_00054 0.53 +0.4
57,402 - CCNA_00054 0.55 -0.1
57,411 + CCNA_00054 0.55 +0.4
57,419 - CCNA_00054 0.56 +1.1
57,419 - CCNA_00054 0.56 +1.1
57,428 + CCNA_00054 0.57 -0.8
57,428 + CCNA_00054 0.57 +0.6
57,448 + CCNA_00054 0.58 +1.8
57,451 - CCNA_00054 0.58 +1.2
57,511 - CCNA_00054 0.63 -0.7
57,511 - CCNA_00054 0.63 +0.6
57,511 - CCNA_00054 0.63 +0.4
57,656 + CCNA_00054 0.74 +0.6
57,660 + CCNA_00054 0.74 +0.8
57,668 - CCNA_00054 0.74 +0.6

Or see this region's nucleotide sequence