Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20935

Experiment: m.b. Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20925 and CA264_20930 overlap by 1 nucleotidesCA264_20930 and CA264_20935 are separated by 9 nucleotidesCA264_20935 and CA264_20940 are separated by 82 nucleotides CA264_20925: CA264_20925 - hypothetical protein, at 50,582 to 50,791 _20925 CA264_20930: CA264_20930 - hypothetical protein, at 50,791 to 51,402 _20930 CA264_20935: CA264_20935 - transcriptional regulator, at 51,412 to 51,783 _20935 CA264_20940: CA264_20940 - pyridine nucleotide-disulfide oxidoreductase, at 51,866 to 53,200 _20940 Position (kb) 51 52Strain fitness (log2 ratio) -2 -1 0 1 2at 50.425 kb on + strandat 50.426 kb on - strandat 50.426 kb on - strandat 50.427 kb on + strandat 50.435 kb on + strandat 50.489 kb on + strandat 50.490 kb on - strandat 50.761 kb on + strand, within CA264_20925at 50.761 kb on + strand, within CA264_20925at 50.762 kb on - strand, within CA264_20925at 50.786 kb on - strandat 50.802 kb on + strandat 50.809 kb on + strandat 50.880 kb on - strand, within CA264_20930at 50.904 kb on + strand, within CA264_20930at 50.906 kb on + strand, within CA264_20930at 51.151 kb on - strand, within CA264_20930at 51.255 kb on - strand, within CA264_20930at 51.429 kb on + strandat 51.439 kb on - strandat 51.488 kb on + strand, within CA264_20935at 51.633 kb on - strand, within CA264_20935at 51.763 kb on - strandat 51.791 kb on - strandat 51.795 kb on - strandat 51.795 kb on - strandat 51.847 kb on - strandat 51.952 kb on + strandat 52.184 kb on + strand, within CA264_20940at 52.185 kb on - strand, within CA264_20940at 52.258 kb on - strand, within CA264_20940at 52.310 kb on + strand, within CA264_20940at 52.311 kb on - strand, within CA264_20940at 52.311 kb on - strand, within CA264_20940at 52.311 kb on - strand, within CA264_20940at 52.311 kb on - strand, within CA264_20940at 52.311 kb on - strand, within CA264_20940at 52.364 kb on - strand, within CA264_20940at 52.383 kb on - strand, within CA264_20940at 52.385 kb on - strand, within CA264_20940at 52.441 kb on - strand, within CA264_20940at 52.528 kb on - strand, within CA264_20940at 52.528 kb on - strand, within CA264_20940at 52.531 kb on - strand, within CA264_20940at 52.531 kb on - strand, within CA264_20940at 52.621 kb on - strand, within CA264_20940at 52.681 kb on - strand, within CA264_20940

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM
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50,425 + -0.7
50,426 - -0.3
50,426 - +0.3
50,427 + -2.1
50,435 + +0.9
50,489 + -0.3
50,490 - +0.2
50,761 + CA264_20925 0.85 -1.0
50,761 + CA264_20925 0.85 -0.8
50,762 - CA264_20925 0.86 +1.1
50,786 - +0.1
50,802 + -0.6
50,809 + -0.2
50,880 - CA264_20930 0.15 -0.2
50,904 + CA264_20930 0.18 -1.5
50,906 + CA264_20930 0.19 +0.0
51,151 - CA264_20930 0.59 +1.9
51,255 - CA264_20930 0.76 -0.3
51,429 + -0.7
51,439 - +1.9
51,488 + CA264_20935 0.20 +0.2
51,633 - CA264_20935 0.59 -0.6
51,763 - -0.1
51,791 - -1.4
51,795 - -1.0
51,795 - -0.3
51,847 - -0.6
51,952 + +0.7
52,184 + CA264_20940 0.24 -0.3
52,185 - CA264_20940 0.24 +1.7
52,258 - CA264_20940 0.29 +1.3
52,310 + CA264_20940 0.33 -1.3
52,311 - CA264_20940 0.33 +0.6
52,311 - CA264_20940 0.33 -0.6
52,311 - CA264_20940 0.33 +1.0
52,311 - CA264_20940 0.33 +0.7
52,311 - CA264_20940 0.33 +0.3
52,364 - CA264_20940 0.37 +0.2
52,383 - CA264_20940 0.39 +1.3
52,385 - CA264_20940 0.39 +0.5
52,441 - CA264_20940 0.43 -0.1
52,528 - CA264_20940 0.50 -0.4
52,528 - CA264_20940 0.50 +0.0
52,531 - CA264_20940 0.50 +0.3
52,531 - CA264_20940 0.50 +0.2
52,621 - CA264_20940 0.57 +0.7
52,681 - CA264_20940 0.61 +0.3

Or see this region's nucleotide sequence