Experiment: m.b. Cobalt chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20775 and CA264_20780 are separated by 532 nucleotides CA264_20780 and CA264_20785 are separated by 243 nucleotides CA264_20785 and CA264_20790 are separated by 46 nucleotides
CA264_20775: CA264_20775 - hypothetical protein, at 15,851 to 16,450
_20775
CA264_20780: CA264_20780 - alpha-glucan family phosphorylase, at 16,983 to 18,638
_20780
CA264_20785: CA264_20785 - hypothetical protein, at 18,882 to 19,229
_20785
CA264_20790: CA264_20790 - glyceraldehyde-3-phosphate dehydrogenase, at 19,276 to 20,313
_20790
Position (kb) 16
17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 15.983 kb on - strand, within CA264_20775 at 16.066 kb on + strand, within CA264_20775 at 16.066 kb on + strand, within CA264_20775 at 16.067 kb on - strand, within CA264_20775 at 16.087 kb on + strand, within CA264_20775 at 16.088 kb on - strand, within CA264_20775 at 16.088 kb on - strand, within CA264_20775 at 16.088 kb on - strand, within CA264_20775 at 16.144 kb on + strand, within CA264_20775 at 16.144 kb on + strand, within CA264_20775 at 16.145 kb on - strand, within CA264_20775 at 16.145 kb on - strand, within CA264_20775 at 16.207 kb on + strand, within CA264_20775 at 16.207 kb on + strand, within CA264_20775 at 16.208 kb on - strand, within CA264_20775 at 16.312 kb on + strand, within CA264_20775 at 16.312 kb on + strand, within CA264_20775 at 16.312 kb on + strand, within CA264_20775 at 16.313 kb on - strand, within CA264_20775 at 16.313 kb on - strand, within CA264_20775 at 16.365 kb on - strand, within CA264_20775 at 16.367 kb on - strand, within CA264_20775 at 16.396 kb on + strand at 16.397 kb on - strand at 16.430 kb on + strand at 16.431 kb on - strand at 16.453 kb on + strand at 16.453 kb on + strand at 16.462 kb on + strand at 16.525 kb on + strand at 16.526 kb on - strand at 16.526 kb on - strand at 16.548 kb on + strand at 16.549 kb on - strand at 16.552 kb on + strand at 16.553 kb on - strand at 16.553 kb on - strand at 16.553 kb on - strand at 16.557 kb on - strand at 16.592 kb on + strand at 16.641 kb on - strand at 16.670 kb on + strand at 16.670 kb on + strand at 16.670 kb on + strand at 16.686 kb on + strand at 16.686 kb on + strand at 16.697 kb on + strand at 16.698 kb on - strand at 16.734 kb on + strand at 16.734 kb on + strand at 16.735 kb on - strand at 16.735 kb on - strand at 16.735 kb on - strand at 16.735 kb on - strand at 16.741 kb on - strand at 16.745 kb on + strand at 16.763 kb on - strand at 16.767 kb on + strand at 16.767 kb on + strand at 16.767 kb on + strand at 16.858 kb on + strand at 16.868 kb on - strand at 16.868 kb on - strand at 16.883 kb on + strand at 16.951 kb on + strand at 16.951 kb on + strand at 16.951 kb on + strand at 16.951 kb on + strand at 16.954 kb on + strand at 16.992 kb on - strand at 16.993 kb on + strand at 16.994 kb on - strand at 16.994 kb on - strand at 16.994 kb on - strand at 17.006 kb on - strand at 17.008 kb on + strand at 17.008 kb on + strand at 17.008 kb on + strand at 17.008 kb on + strand at 17.009 kb on - strand at 17.098 kb on + strand at 17.130 kb on - strand at 17.289 kb on - strand, within CA264_20780 at 17.327 kb on + strand, within CA264_20780 at 17.331 kb on + strand, within CA264_20780 at 17.386 kb on - strand, within CA264_20780 at 17.408 kb on - strand, within CA264_20780 at 17.424 kb on + strand, within CA264_20780 at 17.424 kb on + strand, within CA264_20780 at 17.455 kb on + strand, within CA264_20780 at 17.455 kb on + strand, within CA264_20780 at 17.456 kb on - strand, within CA264_20780 at 17.487 kb on + strand, within CA264_20780 at 17.488 kb on - strand, within CA264_20780 at 17.515 kb on - strand, within CA264_20780 at 17.519 kb on + strand, within CA264_20780 at 17.520 kb on - strand, within CA264_20780 at 17.567 kb on - strand, within CA264_20780 at 17.589 kb on + strand, within CA264_20780 at 17.710 kb on + strand, within CA264_20780 at 17.711 kb on - strand, within CA264_20780 at 17.716 kb on + strand, within CA264_20780 at 17.716 kb on + strand, within CA264_20780 at 17.716 kb on + strand, within CA264_20780 at 17.717 kb on - strand, within CA264_20780 at 17.717 kb on - strand, within CA264_20780 at 17.717 kb on - strand, within CA264_20780 at 17.717 kb on - strand, within CA264_20780 at 17.717 kb on - strand, within CA264_20780 at 17.720 kb on + strand, within CA264_20780 at 17.720 kb on + strand, within CA264_20780 at 17.720 kb on + strand, within CA264_20780 at 17.720 kb on + strand, within CA264_20780 at 17.720 kb on + strand, within CA264_20780 at 17.720 kb on + strand, within CA264_20780 at 17.720 kb on + strand, within CA264_20780 at 17.721 kb on - strand, within CA264_20780 at 17.721 kb on - strand, within CA264_20780 at 17.721 kb on - strand, within CA264_20780 at 17.722 kb on + strand, within CA264_20780 at 17.723 kb on - strand, within CA264_20780 at 17.723 kb on - strand, within CA264_20780 at 17.743 kb on + strand, within CA264_20780 at 17.743 kb on + strand, within CA264_20780 at 17.764 kb on + strand, within CA264_20780 at 17.764 kb on + strand, within CA264_20780 at 17.765 kb on - strand, within CA264_20780 at 17.765 kb on - strand, within CA264_20780 at 17.768 kb on + strand, within CA264_20780 at 17.769 kb on - strand, within CA264_20780 at 17.769 kb on - strand, within CA264_20780 at 17.769 kb on - strand, within CA264_20780 at 17.769 kb on - strand, within CA264_20780 at 17.800 kb on - strand, within CA264_20780 at 17.812 kb on - strand, within CA264_20780 at 17.826 kb on - strand, within CA264_20780 at 17.885 kb on + strand, within CA264_20780 at 17.895 kb on + strand, within CA264_20780 at 17.895 kb on + strand, within CA264_20780 at 18.012 kb on + strand, within CA264_20780 at 18.046 kb on + strand, within CA264_20780 at 18.050 kb on + strand, within CA264_20780 at 18.050 kb on + strand, within CA264_20780 at 18.100 kb on + strand, within CA264_20780 at 18.101 kb on - strand, within CA264_20780 at 18.101 kb on - strand, within CA264_20780 at 18.101 kb on - strand, within CA264_20780 at 18.101 kb on - strand, within CA264_20780 at 18.102 kb on + strand, within CA264_20780 at 18.102 kb on + strand, within CA264_20780 at 18.103 kb on - strand, within CA264_20780 at 18.103 kb on - strand, within CA264_20780 at 18.137 kb on + strand, within CA264_20780 at 18.138 kb on - strand, within CA264_20780 at 18.156 kb on + strand, within CA264_20780 at 18.156 kb on + strand, within CA264_20780 at 18.157 kb on - strand, within CA264_20780 at 18.157 kb on - strand, within CA264_20780 at 18.162 kb on - strand, within CA264_20780 at 18.196 kb on + strand, within CA264_20780 at 18.197 kb on - strand, within CA264_20780 at 18.226 kb on + strand, within CA264_20780 at 18.227 kb on - strand, within CA264_20780 at 18.253 kb on - strand, within CA264_20780 at 18.295 kb on + strand, within CA264_20780 at 18.296 kb on - strand, within CA264_20780 at 18.298 kb on + strand, within CA264_20780 at 18.299 kb on - strand, within CA264_20780 at 18.328 kb on - strand, within CA264_20780 at 18.371 kb on - strand, within CA264_20780 at 18.372 kb on + strand, within CA264_20780 at 18.373 kb on - strand, within CA264_20780 at 18.373 kb on - strand, within CA264_20780 at 18.398 kb on + strand, within CA264_20780 at 18.398 kb on + strand, within CA264_20780 at 18.399 kb on - strand, within CA264_20780 at 18.413 kb on + strand, within CA264_20780 at 18.413 kb on + strand, within CA264_20780 at 18.413 kb on + strand, within CA264_20780 at 18.413 kb on + strand, within CA264_20780 at 18.427 kb on + strand, within CA264_20780 at 18.427 kb on + strand, within CA264_20780 at 18.427 kb on + strand, within CA264_20780 at 18.428 kb on - strand, within CA264_20780 at 18.428 kb on - strand, within CA264_20780 at 18.446 kb on - strand, within CA264_20780 at 18.527 kb on + strand at 18.529 kb on + strand at 18.529 kb on + strand at 18.530 kb on - strand at 18.557 kb on - strand at 18.571 kb on + strand at 18.571 kb on + strand at 18.572 kb on - strand at 18.589 kb on + strand at 18.590 kb on - strand at 18.601 kb on + strand at 18.602 kb on - strand at 18.607 kb on + strand at 18.608 kb on - strand at 18.608 kb on - strand at 18.608 kb on - strand at 18.608 kb on - strand at 18.615 kb on + strand at 18.616 kb on - strand at 18.638 kb on + strand at 18.638 kb on + strand at 18.638 kb on + strand at 18.638 kb on + strand at 18.639 kb on - strand at 18.639 kb on - strand at 18.642 kb on + strand at 18.643 kb on - strand at 18.647 kb on + strand at 18.710 kb on + strand at 18.732 kb on + strand at 18.759 kb on - strand at 18.823 kb on + strand at 18.825 kb on + strand at 18.825 kb on + strand at 18.826 kb on - strand at 18.863 kb on + strand at 18.863 kb on + strand at 18.863 kb on + strand at 18.863 kb on + strand at 18.864 kb on - strand at 18.900 kb on + strand at 18.900 kb on + strand at 18.900 kb on + strand at 18.900 kb on + strand at 18.901 kb on - strand at 18.901 kb on - strand at 18.912 kb on + strand at 18.913 kb on - strand at 18.955 kb on - strand, within CA264_20785 at 18.973 kb on + strand, within CA264_20785 at 18.974 kb on - strand, within CA264_20785 at 19.051 kb on + strand, within CA264_20785 at 19.051 kb on + strand, within CA264_20785 at 19.162 kb on + strand, within CA264_20785 at 19.163 kb on - strand, within CA264_20785 at 19.164 kb on + strand, within CA264_20785 at 19.165 kb on - strand, within CA264_20785 at 19.165 kb on - strand, within CA264_20785 at 19.166 kb on + strand, within CA264_20785 at 19.166 kb on + strand, within CA264_20785 at 19.218 kb on - strand at 19.241 kb on + strand at 19.246 kb on + strand at 19.246 kb on + strand at 19.247 kb on - strand at 19.247 kb on - strand at 19.247 kb on - strand at 19.282 kb on + strand at 19.283 kb on - strand at 19.421 kb on + strand, within CA264_20790 at 19.421 kb on + strand, within CA264_20790 at 19.422 kb on - strand, within CA264_20790 at 19.441 kb on + strand, within CA264_20790 at 19.475 kb on + strand, within CA264_20790 at 19.475 kb on + strand, within CA264_20790 at 19.476 kb on - strand, within CA264_20790 at 19.476 kb on - strand, within CA264_20790 at 19.519 kb on + strand, within CA264_20790
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM remove 15,983 - CA264_20775 0.22 +1.5 16,066 + CA264_20775 0.36 -0.2 16,066 + CA264_20775 0.36 -1.5 16,067 - CA264_20775 0.36 +0.6 16,087 + CA264_20775 0.39 +0.2 16,088 - CA264_20775 0.40 -0.4 16,088 - CA264_20775 0.40 -0.6 16,088 - CA264_20775 0.40 -0.1 16,144 + CA264_20775 0.49 -0.0 16,144 + CA264_20775 0.49 +0.4 16,145 - CA264_20775 0.49 -1.2 16,145 - CA264_20775 0.49 +0.1 16,207 + CA264_20775 0.59 -0.9 16,207 + CA264_20775 0.59 -0.1 16,208 - CA264_20775 0.59 +0.5 16,312 + CA264_20775 0.77 +0.2 16,312 + CA264_20775 0.77 -0.3 16,312 + CA264_20775 0.77 -1.0 16,313 - CA264_20775 0.77 +0.4 16,313 - CA264_20775 0.77 -1.2 16,365 - CA264_20775 0.86 -0.0 16,367 - CA264_20775 0.86 -0.5 16,396 + -0.1 16,397 - -2.1 16,430 + +0.1 16,431 - -0.3 16,453 + -0.1 16,453 + -0.1 16,462 + -1.4 16,525 + +0.2 16,526 - +1.3 16,526 - +0.1 16,548 + +0.4 16,549 - -0.6 16,552 + +0.9 16,553 - -0.2 16,553 - -0.6 16,553 - +0.5 16,557 - -0.7 16,592 + +0.5 16,641 - +0.0 16,670 + +0.1 16,670 + -0.4 16,670 + +0.7 16,686 + -0.4 16,686 + +0.2 16,697 + -0.6 16,698 - +0.9 16,734 + -0.4 16,734 + -0.6 16,735 - -0.4 16,735 - -0.2 16,735 - -0.5 16,735 - +0.1 16,741 - -0.7 16,745 + -0.3 16,763 - -0.7 16,767 + +1.3 16,767 + +0.5 16,767 + -0.3 16,858 + +1.2 16,868 - -0.5 16,868 - -0.5 16,883 + +0.1 16,951 + +0.7 16,951 + -0.3 16,951 + +0.1 16,951 + +0.0 16,954 + -0.6 16,992 - +0.8 16,993 + +0.2 16,994 - -0.8 16,994 - +0.3 16,994 - -1.5 17,006 - +0.1 17,008 + +1.3 17,008 + -0.5 17,008 + -0.7 17,008 + -1.1 17,009 - -0.0 17,098 + -0.4 17,130 - +0.1 17,289 - CA264_20780 0.18 +0.5 17,327 + CA264_20780 0.21 -1.1 17,331 + CA264_20780 0.21 +0.7 17,386 - CA264_20780 0.24 -1.1 17,408 - CA264_20780 0.26 -0.6 17,424 + CA264_20780 0.27 -0.5 17,424 + CA264_20780 0.27 +0.8 17,455 + CA264_20780 0.29 -0.9 17,455 + CA264_20780 0.29 +0.4 17,456 - CA264_20780 0.29 +0.3 17,487 + CA264_20780 0.30 -0.2 17,488 - CA264_20780 0.30 -0.4 17,515 - CA264_20780 0.32 -1.7 17,519 + CA264_20780 0.32 -2.5 17,520 - CA264_20780 0.32 +0.0 17,567 - CA264_20780 0.35 +0.1 17,589 + CA264_20780 0.37 +0.8 17,710 + CA264_20780 0.44 +0.3 17,711 - CA264_20780 0.44 -0.1 17,716 + CA264_20780 0.44 +0.4 17,716 + CA264_20780 0.44 -0.3 17,716 + CA264_20780 0.44 +0.0 17,717 - CA264_20780 0.44 -0.1 17,717 - CA264_20780 0.44 -0.5 17,717 - CA264_20780 0.44 +0.3 17,717 - CA264_20780 0.44 -1.4 17,717 - CA264_20780 0.44 -0.4 17,720 + CA264_20780 0.45 +0.7 17,720 + CA264_20780 0.45 +1.9 17,720 + CA264_20780 0.45 -0.4 17,720 + CA264_20780 0.45 +0.1 17,720 + CA264_20780 0.45 -0.7 17,720 + CA264_20780 0.45 +0.5 17,720 + CA264_20780 0.45 +0.1 17,721 - CA264_20780 0.45 +0.1 17,721 - CA264_20780 0.45 -1.2 17,721 - CA264_20780 0.45 +0.7 17,722 + CA264_20780 0.45 -0.7 17,723 - CA264_20780 0.45 +0.9 17,723 - CA264_20780 0.45 +0.1 17,743 + CA264_20780 0.46 +0.8 17,743 + CA264_20780 0.46 +0.4 17,764 + CA264_20780 0.47 -0.6 17,764 + CA264_20780 0.47 -0.6 17,765 - CA264_20780 0.47 -0.1 17,765 - CA264_20780 0.47 -0.4 17,768 + CA264_20780 0.47 -0.2 17,769 - CA264_20780 0.47 -1.3 17,769 - CA264_20780 0.47 -0.0 17,769 - CA264_20780 0.47 -1.6 17,769 - CA264_20780 0.47 +0.9 17,800 - CA264_20780 0.49 -1.0 17,812 - CA264_20780 0.50 +0.5 17,826 - CA264_20780 0.51 -0.3 17,885 + CA264_20780 0.54 -0.7 17,895 + CA264_20780 0.55 -0.5 17,895 + CA264_20780 0.55 -0.8 18,012 + CA264_20780 0.62 -0.4 18,046 + CA264_20780 0.64 -0.8 18,050 + CA264_20780 0.64 -0.4 18,050 + CA264_20780 0.64 -0.6 18,100 + CA264_20780 0.67 -0.2 18,101 - CA264_20780 0.68 +0.6 18,101 - CA264_20780 0.68 -0.6 18,101 - CA264_20780 0.68 -0.4 18,101 - CA264_20780 0.68 +1.9 18,102 + CA264_20780 0.68 -0.0 18,102 + CA264_20780 0.68 +0.2 18,103 - CA264_20780 0.68 -0.3 18,103 - CA264_20780 0.68 +1.1 18,137 + CA264_20780 0.70 +0.5 18,138 - CA264_20780 0.70 +0.9 18,156 + CA264_20780 0.71 +0.3 18,156 + CA264_20780 0.71 +0.5 18,157 - CA264_20780 0.71 -0.7 18,157 - CA264_20780 0.71 +0.9 18,162 - CA264_20780 0.71 -0.5 18,196 + CA264_20780 0.73 -0.1 18,197 - CA264_20780 0.73 -1.2 18,226 + CA264_20780 0.75 +0.5 18,227 - CA264_20780 0.75 -0.2 18,253 - CA264_20780 0.77 -0.4 18,295 + CA264_20780 0.79 -0.8 18,296 - CA264_20780 0.79 -0.1 18,298 + CA264_20780 0.79 -0.2 18,299 - CA264_20780 0.79 -0.5 18,328 - CA264_20780 0.81 -0.5 18,371 - CA264_20780 0.84 -0.1 18,372 + CA264_20780 0.84 +0.8 18,373 - CA264_20780 0.84 +1.2 18,373 - CA264_20780 0.84 +1.9 18,398 + CA264_20780 0.85 -1.8 18,398 + CA264_20780 0.85 +0.2 18,399 - CA264_20780 0.86 -0.1 18,413 + CA264_20780 0.86 +0.9 18,413 + CA264_20780 0.86 -2.2 18,413 + CA264_20780 0.86 +0.0 18,413 + CA264_20780 0.86 -0.4 18,427 + CA264_20780 0.87 +1.1 18,427 + CA264_20780 0.87 +0.5 18,427 + CA264_20780 0.87 -0.0 18,428 - CA264_20780 0.87 +0.4 18,428 - CA264_20780 0.87 -0.1 18,446 - CA264_20780 0.88 -0.2 18,527 + -0.8 18,529 + +0.2 18,529 + -0.3 18,530 - -1.1 18,557 - -0.2 18,571 + -0.3 18,571 + +0.2 18,572 - -1.1 18,589 + +0.3 18,590 - +0.9 18,601 + +2.5 18,602 - -0.4 18,607 + -0.2 18,608 - +0.1 18,608 - -0.2 18,608 - -0.3 18,608 - -0.9 18,615 + -0.7 18,616 - +0.7 18,638 + +1.0 18,638 + +0.9 18,638 + +1.0 18,638 + -0.0 18,639 - -1.0 18,639 - +1.5 18,642 + +0.4 18,643 - +0.2 18,647 + -2.6 18,710 + +1.0 18,732 + +0.1 18,759 - -0.6 18,823 + +0.0 18,825 + -0.3 18,825 + -1.4 18,826 - -0.1 18,863 + -0.2 18,863 + +1.6 18,863 + -0.1 18,863 + +0.3 18,864 - -1.7 18,900 + +0.2 18,900 + +0.5 18,900 + +1.5 18,900 + -0.0 18,901 - -0.3 18,901 - +0.2 18,912 + -0.9 18,913 - +0.4 18,955 - CA264_20785 0.21 -0.9 18,973 + CA264_20785 0.26 -0.3 18,974 - CA264_20785 0.26 +0.6 19,051 + CA264_20785 0.49 -0.6 19,051 + CA264_20785 0.49 -0.6 19,162 + CA264_20785 0.80 -0.2 19,163 - CA264_20785 0.81 +0.0 19,164 + CA264_20785 0.81 -0.1 19,165 - CA264_20785 0.81 -0.6 19,165 - CA264_20785 0.81 -0.2 19,166 + CA264_20785 0.82 -0.2 19,166 + CA264_20785 0.82 -0.1 19,218 - -0.3 19,241 + -0.5 19,246 + +0.3 19,246 + +0.9 19,247 - -0.4 19,247 - -0.0 19,247 - -0.7 19,282 + +0.1 19,283 - -0.8 19,421 + CA264_20790 0.14 +0.2 19,421 + CA264_20790 0.14 -0.2 19,422 - CA264_20790 0.14 -0.3 19,441 + CA264_20790 0.16 +0.3 19,475 + CA264_20790 0.19 +0.1 19,475 + CA264_20790 0.19 -0.1 19,476 - CA264_20790 0.19 -0.6 19,476 - CA264_20790 0.19 -1.2 19,519 + CA264_20790 0.23 +0.9
Or see this region's nucleotide sequence