Experiment: m.b. Cobalt chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20165 and CA264_20170 are separated by 2 nucleotides CA264_20170 and CA264_20175 are separated by 266 nucleotides
CA264_20165: CA264_20165 - HlyD family secretion protein, at 4,653,838 to 4,655,016
_20165
CA264_20170: CA264_20170 - hypothetical protein, at 4,655,019 to 4,656,347
_20170
CA264_20175: CA264_20175 - hypothetical protein, at 4,656,614 to 4,658,299
_20175
Position (kb)
4655
4656
4657 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4654.019 kb on - strand, within CA264_20165 at 4654.020 kb on + strand, within CA264_20165 at 4654.053 kb on + strand, within CA264_20165 at 4654.054 kb on - strand, within CA264_20165 at 4654.107 kb on - strand, within CA264_20165 at 4654.255 kb on + strand, within CA264_20165 at 4654.256 kb on - strand, within CA264_20165 at 4654.284 kb on - strand, within CA264_20165 at 4654.284 kb on - strand, within CA264_20165 at 4654.320 kb on + strand, within CA264_20165 at 4654.371 kb on - strand, within CA264_20165 at 4654.371 kb on - strand, within CA264_20165 at 4654.382 kb on - strand, within CA264_20165 at 4654.481 kb on + strand, within CA264_20165 at 4654.482 kb on - strand, within CA264_20165 at 4654.616 kb on - strand, within CA264_20165 at 4654.616 kb on - strand, within CA264_20165 at 4654.626 kb on + strand, within CA264_20165 at 4654.657 kb on + strand, within CA264_20165 at 4654.658 kb on - strand, within CA264_20165 at 4654.658 kb on - strand, within CA264_20165 at 4654.662 kb on + strand, within CA264_20165 at 4654.663 kb on - strand, within CA264_20165 at 4654.668 kb on + strand, within CA264_20165 at 4654.670 kb on + strand, within CA264_20165 at 4654.884 kb on + strand, within CA264_20165 at 4654.959 kb on + strand at 4654.991 kb on - strand at 4654.994 kb on - strand at 4654.994 kb on - strand at 4655.010 kb on - strand at 4655.016 kb on + strand at 4655.017 kb on - strand at 4655.038 kb on - strand at 4655.038 kb on - strand at 4655.135 kb on - strand at 4655.196 kb on + strand, within CA264_20170 at 4655.269 kb on - strand, within CA264_20170 at 4655.302 kb on + strand, within CA264_20170 at 4655.303 kb on - strand, within CA264_20170 at 4655.309 kb on - strand, within CA264_20170 at 4655.436 kb on + strand, within CA264_20170 at 4655.535 kb on + strand, within CA264_20170 at 4655.536 kb on - strand, within CA264_20170 at 4655.599 kb on - strand, within CA264_20170 at 4655.618 kb on + strand, within CA264_20170 at 4655.618 kb on + strand, within CA264_20170 at 4655.619 kb on - strand, within CA264_20170 at 4655.619 kb on - strand, within CA264_20170 at 4655.619 kb on - strand, within CA264_20170 at 4655.622 kb on + strand, within CA264_20170 at 4655.635 kb on + strand, within CA264_20170 at 4655.635 kb on + strand, within CA264_20170 at 4655.636 kb on - strand, within CA264_20170 at 4655.636 kb on - strand, within CA264_20170 at 4655.638 kb on + strand, within CA264_20170 at 4655.641 kb on - strand, within CA264_20170 at 4655.769 kb on - strand, within CA264_20170 at 4655.812 kb on - strand, within CA264_20170 at 4655.837 kb on + strand, within CA264_20170 at 4655.837 kb on + strand, within CA264_20170 at 4655.837 kb on + strand, within CA264_20170 at 4655.838 kb on - strand, within CA264_20170 at 4655.838 kb on - strand, within CA264_20170 at 4655.839 kb on + strand, within CA264_20170 at 4655.839 kb on + strand, within CA264_20170 at 4655.840 kb on - strand, within CA264_20170 at 4655.844 kb on + strand, within CA264_20170 at 4655.844 kb on + strand, within CA264_20170 at 4655.845 kb on - strand, within CA264_20170 at 4655.845 kb on - strand, within CA264_20170 at 4655.847 kb on - strand, within CA264_20170 at 4655.848 kb on + strand, within CA264_20170 at 4656.014 kb on + strand, within CA264_20170 at 4656.015 kb on - strand, within CA264_20170 at 4656.054 kb on - strand, within CA264_20170 at 4656.174 kb on + strand, within CA264_20170 at 4656.247 kb on + strand at 4656.247 kb on + strand at 4656.320 kb on + strand at 4656.321 kb on - strand at 4656.321 kb on - strand at 4656.323 kb on + strand at 4656.326 kb on - strand at 4656.347 kb on + strand at 4656.348 kb on - strand at 4656.348 kb on - strand at 4656.351 kb on + strand at 4656.352 kb on - strand at 4656.352 kb on - strand at 4656.352 kb on - strand at 4656.382 kb on - strand at 4656.384 kb on + strand at 4656.384 kb on + strand at 4656.420 kb on - strand at 4656.438 kb on - strand at 4656.463 kb on + strand at 4656.512 kb on + strand at 4656.513 kb on - strand at 4656.516 kb on - strand at 4656.516 kb on - strand at 4656.518 kb on + strand at 4656.524 kb on + strand at 4656.549 kb on - strand at 4656.549 kb on - strand at 4656.558 kb on + strand at 4656.559 kb on - strand at 4656.574 kb on + strand at 4656.574 kb on + strand at 4656.595 kb on + strand at 4656.595 kb on + strand at 4656.596 kb on - strand at 4656.602 kb on - strand at 4656.606 kb on + strand at 4656.606 kb on + strand at 4656.608 kb on + strand at 4656.609 kb on - strand at 4656.609 kb on - strand at 4656.609 kb on - strand at 4656.609 kb on - strand at 4656.609 kb on - strand at 4656.611 kb on + strand at 4656.680 kb on - strand at 4656.680 kb on - strand at 4656.687 kb on + strand at 4656.691 kb on + strand at 4656.692 kb on - strand at 4656.692 kb on - strand at 4656.830 kb on + strand, within CA264_20175 at 4656.831 kb on - strand, within CA264_20175 at 4656.871 kb on - strand, within CA264_20175 at 4656.871 kb on - strand, within CA264_20175 at 4656.871 kb on - strand, within CA264_20175 at 4656.887 kb on - strand, within CA264_20175 at 4656.954 kb on + strand, within CA264_20175 at 4656.955 kb on - strand, within CA264_20175 at 4656.999 kb on - strand, within CA264_20175 at 4657.009 kb on + strand, within CA264_20175 at 4657.052 kb on + strand, within CA264_20175 at 4657.062 kb on - strand, within CA264_20175 at 4657.062 kb on - strand, within CA264_20175 at 4657.062 kb on - strand, within CA264_20175 at 4657.064 kb on - strand, within CA264_20175 at 4657.073 kb on + strand, within CA264_20175 at 4657.074 kb on - strand, within CA264_20175 at 4657.127 kb on + strand, within CA264_20175 at 4657.131 kb on + strand, within CA264_20175 at 4657.132 kb on - strand, within CA264_20175 at 4657.132 kb on - strand, within CA264_20175 at 4657.181 kb on - strand, within CA264_20175 at 4657.243 kb on - strand, within CA264_20175 at 4657.247 kb on + strand, within CA264_20175 at 4657.251 kb on + strand, within CA264_20175 at 4657.251 kb on + strand, within CA264_20175 at 4657.252 kb on - strand, within CA264_20175 at 4657.326 kb on - strand, within CA264_20175
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM remove 4,654,019 - CA264_20165 0.15 -0.7 4,654,020 + CA264_20165 0.15 -1.3 4,654,053 + CA264_20165 0.18 +1.6 4,654,054 - CA264_20165 0.18 -0.5 4,654,107 - CA264_20165 0.23 -2.0 4,654,255 + CA264_20165 0.35 +0.5 4,654,256 - CA264_20165 0.35 +0.2 4,654,284 - CA264_20165 0.38 +1.5 4,654,284 - CA264_20165 0.38 +0.1 4,654,320 + CA264_20165 0.41 +0.0 4,654,371 - CA264_20165 0.45 -0.7 4,654,371 - CA264_20165 0.45 -0.7 4,654,382 - CA264_20165 0.46 -0.1 4,654,481 + CA264_20165 0.55 +0.3 4,654,482 - CA264_20165 0.55 +0.1 4,654,616 - CA264_20165 0.66 -0.1 4,654,616 - CA264_20165 0.66 -0.4 4,654,626 + CA264_20165 0.67 +0.3 4,654,657 + CA264_20165 0.69 +2.1 4,654,658 - CA264_20165 0.70 -0.3 4,654,658 - CA264_20165 0.70 +1.0 4,654,662 + CA264_20165 0.70 +0.9 4,654,663 - CA264_20165 0.70 +1.7 4,654,668 + CA264_20165 0.70 +0.1 4,654,670 + CA264_20165 0.71 -1.0 4,654,884 + CA264_20165 0.89 +0.5 4,654,959 + +0.5 4,654,991 - -0.1 4,654,994 - +2.7 4,654,994 - +0.2 4,655,010 - +1.0 4,655,016 + +1.3 4,655,017 - -0.2 4,655,038 - -0.4 4,655,038 - -0.6 4,655,135 - +0.5 4,655,196 + CA264_20170 0.13 +0.2 4,655,269 - CA264_20170 0.19 -1.5 4,655,302 + CA264_20170 0.21 +0.3 4,655,303 - CA264_20170 0.21 -0.7 4,655,309 - CA264_20170 0.22 -0.3 4,655,436 + CA264_20170 0.31 -0.3 4,655,535 + CA264_20170 0.39 +0.6 4,655,536 - CA264_20170 0.39 -0.4 4,655,599 - CA264_20170 0.44 -0.8 4,655,618 + CA264_20170 0.45 +0.1 4,655,618 + CA264_20170 0.45 +0.0 4,655,619 - CA264_20170 0.45 -0.8 4,655,619 - CA264_20170 0.45 +0.1 4,655,619 - CA264_20170 0.45 -0.4 4,655,622 + CA264_20170 0.45 -0.3 4,655,635 + CA264_20170 0.46 -0.6 4,655,635 + CA264_20170 0.46 -0.6 4,655,636 - CA264_20170 0.46 +0.3 4,655,636 - CA264_20170 0.46 -0.8 4,655,638 + CA264_20170 0.47 -0.3 4,655,641 - CA264_20170 0.47 +0.1 4,655,769 - CA264_20170 0.56 +0.0 4,655,812 - CA264_20170 0.60 +1.3 4,655,837 + CA264_20170 0.62 +0.4 4,655,837 + CA264_20170 0.62 +1.2 4,655,837 + CA264_20170 0.62 -0.5 4,655,838 - CA264_20170 0.62 +0.2 4,655,838 - CA264_20170 0.62 +1.0 4,655,839 + CA264_20170 0.62 +2.3 4,655,839 + CA264_20170 0.62 -0.1 4,655,840 - CA264_20170 0.62 +0.1 4,655,844 + CA264_20170 0.62 -0.2 4,655,844 + CA264_20170 0.62 +0.5 4,655,845 - CA264_20170 0.62 -0.4 4,655,845 - CA264_20170 0.62 -0.5 4,655,847 - CA264_20170 0.62 -0.2 4,655,848 + CA264_20170 0.62 +0.0 4,656,014 + CA264_20170 0.75 -0.3 4,656,015 - CA264_20170 0.75 +0.2 4,656,054 - CA264_20170 0.78 +0.6 4,656,174 + CA264_20170 0.87 -0.2 4,656,247 + +0.8 4,656,247 + -0.4 4,656,320 + -0.4 4,656,321 - -0.4 4,656,321 - +0.2 4,656,323 + +0.0 4,656,326 - +0.7 4,656,347 + -0.7 4,656,348 - -1.5 4,656,348 - +0.2 4,656,351 + -0.6 4,656,352 - +0.8 4,656,352 - +2.1 4,656,352 - +0.7 4,656,382 - -0.4 4,656,384 + -0.4 4,656,384 + -0.1 4,656,420 - -2.3 4,656,438 - -0.0 4,656,463 + +0.3 4,656,512 + +1.0 4,656,513 - +0.1 4,656,516 - +0.0 4,656,516 - -0.4 4,656,518 + +1.2 4,656,524 + +0.2 4,656,549 - -0.9 4,656,549 - -0.6 4,656,558 + +0.1 4,656,559 - +0.2 4,656,574 + +0.2 4,656,574 + -0.3 4,656,595 + -0.3 4,656,595 + +0.1 4,656,596 - +0.1 4,656,602 - -0.7 4,656,606 + +0.4 4,656,606 + -0.1 4,656,608 + +0.2 4,656,609 - -0.3 4,656,609 - +0.2 4,656,609 - +0.0 4,656,609 - +0.1 4,656,609 - -0.5 4,656,611 + -0.2 4,656,680 - +0.3 4,656,680 - -0.1 4,656,687 + +0.6 4,656,691 + -0.4 4,656,692 - -0.0 4,656,692 - -2.2 4,656,830 + CA264_20175 0.13 -0.4 4,656,831 - CA264_20175 0.13 -0.1 4,656,871 - CA264_20175 0.15 +0.5 4,656,871 - CA264_20175 0.15 +0.0 4,656,871 - CA264_20175 0.15 -0.9 4,656,887 - CA264_20175 0.16 -0.0 4,656,954 + CA264_20175 0.20 -0.3 4,656,955 - CA264_20175 0.20 +0.1 4,656,999 - CA264_20175 0.23 -0.4 4,657,009 + CA264_20175 0.23 +0.1 4,657,052 + CA264_20175 0.26 -0.1 4,657,062 - CA264_20175 0.27 -0.2 4,657,062 - CA264_20175 0.27 -0.3 4,657,062 - CA264_20175 0.27 +0.0 4,657,064 - CA264_20175 0.27 +0.3 4,657,073 + CA264_20175 0.27 -1.3 4,657,074 - CA264_20175 0.27 +1.4 4,657,127 + CA264_20175 0.30 +0.4 4,657,131 + CA264_20175 0.31 +1.0 4,657,132 - CA264_20175 0.31 +0.2 4,657,132 - CA264_20175 0.31 -0.2 4,657,181 - CA264_20175 0.34 +0.5 4,657,243 - CA264_20175 0.37 +1.1 4,657,247 + CA264_20175 0.38 +0.2 4,657,251 + CA264_20175 0.38 +0.5 4,657,251 + CA264_20175 0.38 +0.7 4,657,252 - CA264_20175 0.38 +0.8 4,657,326 - CA264_20175 0.42 +0.3
Or see this region's nucleotide sequence