Experiment: m.b. Cobalt chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19850 and CA264_19855 are separated by 258 nucleotides CA264_19855 and CA264_19860 are separated by 297 nucleotides CA264_19860 and CA264_19865 are separated by 138 nucleotides CA264_19865 and CA264_19870 are separated by 394 nucleotides
CA264_19850: CA264_19850 - citrate transporter, at 4,579,421 to 4,580,806
_19850
CA264_19855: CA264_19855 - hypothetical protein, at 4,581,065 to 4,581,250
_19855
CA264_19860: CA264_19860 - NifU family protein, at 4,581,548 to 4,582,159
_19860
CA264_19865: CA264_19865 - hypothetical protein, at 4,582,298 to 4,582,531
_19865
CA264_19870: CA264_19870 - protein translocase subunit SecDF, at 4,582,926 to 4,585,922
_19870
Position (kb)
4581
4582
4583 Strain fitness (log2 ratio)
-1
0
1
2 at 4580.838 kb on - strand at 4580.864 kb on - strand at 4580.881 kb on + strand at 4580.881 kb on + strand at 4580.881 kb on + strand at 4580.881 kb on + strand at 4580.882 kb on - strand at 4580.882 kb on - strand at 4580.999 kb on + strand at 4581.066 kb on + strand at 4581.066 kb on + strand at 4581.067 kb on - strand at 4581.091 kb on + strand, within CA264_19855 at 4581.092 kb on - strand, within CA264_19855 at 4581.092 kb on - strand, within CA264_19855 at 4581.096 kb on - strand, within CA264_19855 at 4581.096 kb on - strand, within CA264_19855 at 4581.096 kb on - strand, within CA264_19855 at 4581.099 kb on + strand, within CA264_19855 at 4581.099 kb on + strand, within CA264_19855 at 4581.099 kb on + strand, within CA264_19855 at 4581.100 kb on - strand, within CA264_19855 at 4581.110 kb on + strand, within CA264_19855 at 4581.111 kb on - strand, within CA264_19855 at 4581.112 kb on + strand, within CA264_19855 at 4581.129 kb on - strand, within CA264_19855 at 4581.129 kb on - strand, within CA264_19855 at 4581.129 kb on - strand, within CA264_19855 at 4581.182 kb on + strand, within CA264_19855 at 4581.192 kb on - strand, within CA264_19855 at 4581.192 kb on - strand, within CA264_19855 at 4581.192 kb on - strand, within CA264_19855 at 4581.204 kb on - strand, within CA264_19855 at 4581.212 kb on + strand, within CA264_19855 at 4581.262 kb on + strand at 4581.270 kb on - strand at 4581.270 kb on - strand at 4581.292 kb on - strand at 4581.311 kb on - strand at 4581.311 kb on - strand at 4581.311 kb on - strand at 4581.363 kb on + strand at 4581.364 kb on - strand at 4581.367 kb on + strand at 4581.368 kb on - strand at 4581.485 kb on - strand at 4581.511 kb on + strand at 4581.511 kb on + strand at 4581.513 kb on + strand at 4581.513 kb on + strand at 4581.514 kb on - strand at 4581.582 kb on - strand at 4581.832 kb on - strand, within CA264_19860 at 4581.956 kb on - strand, within CA264_19860 at 4581.959 kb on + strand, within CA264_19860 at 4581.959 kb on + strand, within CA264_19860 at 4581.959 kb on + strand, within CA264_19860 at 4581.960 kb on - strand, within CA264_19860 at 4581.960 kb on - strand, within CA264_19860 at 4582.004 kb on - strand, within CA264_19860 at 4582.074 kb on + strand, within CA264_19860 at 4582.157 kb on + strand at 4582.178 kb on - strand at 4582.184 kb on + strand at 4582.227 kb on - strand at 4582.306 kb on + strand at 4582.306 kb on + strand at 4582.338 kb on + strand, within CA264_19865 at 4582.365 kb on + strand, within CA264_19865 at 4582.366 kb on - strand, within CA264_19865 at 4582.375 kb on - strand, within CA264_19865 at 4582.375 kb on - strand, within CA264_19865 at 4582.375 kb on - strand, within CA264_19865 at 4582.375 kb on - strand, within CA264_19865 at 4582.546 kb on - strand at 4582.601 kb on - strand at 4582.634 kb on - strand at 4582.634 kb on - strand at 4582.686 kb on + strand at 4582.686 kb on + strand at 4582.692 kb on + strand at 4582.713 kb on + strand at 4582.713 kb on + strand at 4582.714 kb on - strand at 4582.714 kb on - strand at 4582.751 kb on + strand at 4582.752 kb on - strand at 4582.752 kb on - strand at 4582.753 kb on + strand at 4582.754 kb on - strand at 4582.754 kb on - strand at 4582.754 kb on - strand at 4582.804 kb on + strand at 4582.805 kb on - strand at 4582.816 kb on + strand at 4582.816 kb on + strand at 4582.819 kb on - strand at 4582.858 kb on + strand at 4582.859 kb on - strand at 4582.861 kb on - strand at 4582.861 kb on - strand at 4582.861 kb on - strand at 4582.864 kb on + strand at 4582.865 kb on - strand at 4582.865 kb on - strand at 4582.865 kb on - strand at 4582.865 kb on - strand at 4582.865 kb on - strand at 4582.919 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM remove 4,580,838 - -0.3 4,580,864 - -0.3 4,580,881 + +1.4 4,580,881 + +0.5 4,580,881 + +1.0 4,580,881 + -0.5 4,580,882 - +0.5 4,580,882 - +0.6 4,580,999 + -0.4 4,581,066 + -0.1 4,581,066 + +0.4 4,581,067 - -1.0 4,581,091 + CA264_19855 0.14 +0.5 4,581,092 - CA264_19855 0.15 -0.4 4,581,092 - CA264_19855 0.15 -1.6 4,581,096 - CA264_19855 0.17 -0.7 4,581,096 - CA264_19855 0.17 +1.3 4,581,096 - CA264_19855 0.17 +0.4 4,581,099 + CA264_19855 0.18 -1.4 4,581,099 + CA264_19855 0.18 +0.5 4,581,099 + CA264_19855 0.18 -0.4 4,581,100 - CA264_19855 0.19 -0.6 4,581,110 + CA264_19855 0.24 +0.7 4,581,111 - CA264_19855 0.25 -0.4 4,581,112 + CA264_19855 0.25 -0.3 4,581,129 - CA264_19855 0.34 +0.2 4,581,129 - CA264_19855 0.34 -0.2 4,581,129 - CA264_19855 0.34 +0.1 4,581,182 + CA264_19855 0.63 -1.1 4,581,192 - CA264_19855 0.68 +0.3 4,581,192 - CA264_19855 0.68 +0.1 4,581,192 - CA264_19855 0.68 +0.2 4,581,204 - CA264_19855 0.75 +0.3 4,581,212 + CA264_19855 0.79 +0.6 4,581,262 + -0.1 4,581,270 - -1.3 4,581,270 - -0.6 4,581,292 - -0.1 4,581,311 - -0.5 4,581,311 - +1.9 4,581,311 - +0.7 4,581,363 + -0.1 4,581,364 - +0.1 4,581,367 + -0.6 4,581,368 - +1.1 4,581,485 - -0.6 4,581,511 + +0.4 4,581,511 + -0.3 4,581,513 + +0.2 4,581,513 + -1.0 4,581,514 - +0.7 4,581,582 - +1.5 4,581,832 - CA264_19860 0.46 +1.7 4,581,956 - CA264_19860 0.67 +1.4 4,581,959 + CA264_19860 0.67 +1.8 4,581,959 + CA264_19860 0.67 +1.4 4,581,959 + CA264_19860 0.67 +1.1 4,581,960 - CA264_19860 0.67 +1.2 4,581,960 - CA264_19860 0.67 +1.0 4,582,004 - CA264_19860 0.75 +0.6 4,582,074 + CA264_19860 0.86 +0.4 4,582,157 + +1.7 4,582,178 - +1.0 4,582,184 + +0.7 4,582,227 - -0.9 4,582,306 + +1.3 4,582,306 + -0.0 4,582,338 + CA264_19865 0.17 +0.6 4,582,365 + CA264_19865 0.29 +0.1 4,582,366 - CA264_19865 0.29 +0.6 4,582,375 - CA264_19865 0.33 +0.1 4,582,375 - CA264_19865 0.33 +0.1 4,582,375 - CA264_19865 0.33 +0.0 4,582,375 - CA264_19865 0.33 +0.3 4,582,546 - -0.1 4,582,601 - -0.2 4,582,634 - -0.2 4,582,634 - +0.3 4,582,686 + -0.1 4,582,686 + -0.9 4,582,692 + -0.4 4,582,713 + +0.3 4,582,713 + -0.8 4,582,714 - -0.2 4,582,714 - -0.3 4,582,751 + +0.6 4,582,752 - +0.1 4,582,752 - +0.5 4,582,753 + +0.7 4,582,754 - -0.7 4,582,754 - -0.0 4,582,754 - -0.1 4,582,804 + +0.1 4,582,805 - -0.0 4,582,816 + -0.2 4,582,816 + +0.4 4,582,819 - -0.7 4,582,858 + -0.2 4,582,859 - +0.2 4,582,861 - -0.5 4,582,861 - +0.4 4,582,861 - +1.0 4,582,864 + +0.8 4,582,865 - -0.9 4,582,865 - +0.2 4,582,865 - +0.2 4,582,865 - +0.1 4,582,865 - +0.5 4,582,919 + -1.1
Or see this region's nucleotide sequence