Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19750

Experiment: m.b. Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19745 and CA264_19750 are separated by 193 nucleotidesCA264_19750 and CA264_19755 are separated by 262 nucleotidesCA264_19755 and CA264_19760 are separated by 119 nucleotides CA264_19745: CA264_19745 - serine/threonine protein phosphatase, at 4,556,883 to 4,559,048 _19745 CA264_19750: CA264_19750 - IMP dehydrogenase, at 4,559,242 to 4,560,711 _19750 CA264_19755: CA264_19755 - rhodanese, at 4,560,974 to 4,561,291 _19755 CA264_19760: CA264_19760 - hypothetical protein, at 4,561,411 to 4,562,124 _19760 Position (kb) 4559 4560 4561Strain fitness (log2 ratio) -1 0 1 2 3at 4558.285 kb on + strand, within CA264_19745at 4558.285 kb on + strand, within CA264_19745at 4558.285 kb on + strand, within CA264_19745at 4558.285 kb on + strand, within CA264_19745at 4558.285 kb on + strand, within CA264_19745at 4558.293 kb on - strand, within CA264_19745at 4558.301 kb on + strand, within CA264_19745at 4558.423 kb on + strand, within CA264_19745at 4558.423 kb on + strand, within CA264_19745at 4558.424 kb on - strand, within CA264_19745at 4558.424 kb on - strand, within CA264_19745at 4558.424 kb on - strand, within CA264_19745at 4558.433 kb on - strand, within CA264_19745at 4558.436 kb on + strand, within CA264_19745at 4558.522 kb on + strand, within CA264_19745at 4558.546 kb on + strand, within CA264_19745at 4558.546 kb on + strand, within CA264_19745at 4558.547 kb on - strand, within CA264_19745at 4558.784 kb on + strand, within CA264_19745at 4558.949 kb on + strandat 4558.950 kb on - strandat 4558.989 kb on - strandat 4559.010 kb on + strandat 4559.084 kb on - strandat 4559.088 kb on + strandat 4559.089 kb on - strandat 4559.092 kb on + strandat 4559.095 kb on - strandat 4559.112 kb on + strandat 4559.113 kb on - strandat 4559.113 kb on - strandat 4559.211 kb on + strandat 4559.211 kb on + strandat 4559.212 kb on - strandat 4559.216 kb on - strandat 4559.223 kb on + strandat 4559.224 kb on - strandat 4559.232 kb on - strandat 4559.232 kb on - strandat 4559.233 kb on + strandat 4559.233 kb on + strandat 4559.278 kb on + strandat 4559.278 kb on + strandat 4559.279 kb on - strandat 4559.406 kb on - strand, within CA264_19750at 4559.556 kb on + strand, within CA264_19750at 4559.574 kb on - strand, within CA264_19750at 4559.776 kb on + strand, within CA264_19750at 4559.794 kb on - strand, within CA264_19750at 4559.794 kb on - strand, within CA264_19750at 4559.794 kb on - strand, within CA264_19750at 4560.168 kb on + strand, within CA264_19750at 4560.333 kb on + strand, within CA264_19750at 4560.441 kb on + strand, within CA264_19750at 4560.442 kb on - strand, within CA264_19750at 4560.452 kb on - strand, within CA264_19750at 4560.452 kb on - strand, within CA264_19750at 4560.597 kb on + strandat 4560.642 kb on - strandat 4560.733 kb on + strandat 4560.733 kb on + strandat 4560.760 kb on + strandat 4560.769 kb on - strandat 4560.831 kb on - strandat 4560.897 kb on - strandat 4560.941 kb on + strandat 4560.953 kb on + strandat 4560.976 kb on - strandat 4560.978 kb on + strandat 4561.313 kb on - strandat 4561.315 kb on - strandat 4561.321 kb on - strandat 4561.339 kb on - strandat 4561.392 kb on - strandat 4561.431 kb on - strandat 4561.541 kb on - strand, within CA264_19760at 4561.687 kb on + strand, within CA264_19760at 4561.691 kb on - strand, within CA264_19760

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM
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4,558,285 + CA264_19745 0.65 +1.3
4,558,285 + CA264_19745 0.65 -0.6
4,558,285 + CA264_19745 0.65 -0.3
4,558,285 + CA264_19745 0.65 -0.2
4,558,285 + CA264_19745 0.65 -0.9
4,558,293 - CA264_19745 0.65 +1.1
4,558,301 + CA264_19745 0.65 +0.1
4,558,423 + CA264_19745 0.71 -0.4
4,558,423 + CA264_19745 0.71 +0.2
4,558,424 - CA264_19745 0.71 -0.1
4,558,424 - CA264_19745 0.71 -0.1
4,558,424 - CA264_19745 0.71 -0.9
4,558,433 - CA264_19745 0.72 +0.4
4,558,436 + CA264_19745 0.72 +0.1
4,558,522 + CA264_19745 0.76 -1.0
4,558,546 + CA264_19745 0.77 -0.4
4,558,546 + CA264_19745 0.77 -0.6
4,558,547 - CA264_19745 0.77 +1.7
4,558,784 + CA264_19745 0.88 +0.4
4,558,949 + -0.4
4,558,950 - +0.8
4,558,989 - +0.8
4,559,010 + +0.1
4,559,084 - +0.5
4,559,088 + +0.2
4,559,089 - +0.5
4,559,092 + -0.0
4,559,095 - +0.4
4,559,112 + +0.0
4,559,113 - +2.0
4,559,113 - -0.1
4,559,211 + +0.4
4,559,211 + +0.3
4,559,212 - +0.1
4,559,216 - +0.6
4,559,223 + -0.1
4,559,224 - +0.7
4,559,232 - -0.3
4,559,232 - +0.4
4,559,233 + -0.5
4,559,233 + -0.3
4,559,278 + +0.5
4,559,278 + +0.3
4,559,279 - +0.6
4,559,406 - CA264_19750 0.11 +2.0
4,559,556 + CA264_19750 0.21 -1.5
4,559,574 - CA264_19750 0.23 +0.3
4,559,776 + CA264_19750 0.36 +1.5
4,559,794 - CA264_19750 0.38 +1.5
4,559,794 - CA264_19750 0.38 -0.6
4,559,794 - CA264_19750 0.38 +0.0
4,560,168 + CA264_19750 0.63 +0.0
4,560,333 + CA264_19750 0.74 +1.0
4,560,441 + CA264_19750 0.82 +0.2
4,560,442 - CA264_19750 0.82 +0.7
4,560,452 - CA264_19750 0.82 -0.4
4,560,452 - CA264_19750 0.82 -0.5
4,560,597 + +0.5
4,560,642 - +1.4
4,560,733 + +0.1
4,560,733 + -1.3
4,560,760 + -0.1
4,560,769 - +0.4
4,560,831 - +1.7
4,560,897 - +0.0
4,560,941 + +0.1
4,560,953 + +3.3
4,560,976 - -1.0
4,560,978 + +0.3
4,561,313 - -0.1
4,561,315 - -0.3
4,561,321 - -0.0
4,561,339 - -0.4
4,561,392 - +0.2
4,561,431 - +0.7
4,561,541 - CA264_19760 0.18 -0.8
4,561,687 + CA264_19760 0.39 -0.8
4,561,691 - CA264_19760 0.39 -0.7

Or see this region's nucleotide sequence