Experiment: m.b. Cobalt chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15405 and CA264_15410 are separated by 153 nucleotides CA264_15410 and CA264_15415 are separated by 62 nucleotides CA264_15415 and CA264_15420 are separated by 120 nucleotides
CA264_15405: CA264_15405 - oxidoreductase, at 3,608,821 to 3,609,816
_15405
CA264_15410: CA264_15410 - hypothetical protein, at 3,609,970 to 3,610,605
_15410
CA264_15415: CA264_15415 - 1-aminocyclopropane-1-carboxylate deaminase, at 3,610,668 to 3,611,573
_15415
CA264_15420: CA264_15420 - hypothetical protein, at 3,611,694 to 3,614,132
_15420
Position (kb)
3610
3611
3612 Strain fitness (log2 ratio)
-1
0
1
2 at 3609.671 kb on - strand, within CA264_15405 at 3609.728 kb on + strand at 3609.728 kb on + strand at 3609.729 kb on - strand at 3609.814 kb on + strand at 3609.815 kb on - strand at 3609.904 kb on + strand at 3610.096 kb on + strand, within CA264_15410 at 3610.097 kb on - strand, within CA264_15410 at 3610.097 kb on - strand, within CA264_15410 at 3610.139 kb on + strand, within CA264_15410 at 3610.140 kb on - strand, within CA264_15410 at 3610.143 kb on + strand, within CA264_15410 at 3610.144 kb on - strand, within CA264_15410 at 3610.146 kb on - strand, within CA264_15410 at 3610.178 kb on + strand, within CA264_15410 at 3610.178 kb on + strand, within CA264_15410 at 3610.178 kb on + strand, within CA264_15410 at 3610.225 kb on - strand, within CA264_15410 at 3610.226 kb on + strand, within CA264_15410 at 3610.227 kb on - strand, within CA264_15410 at 3610.229 kb on + strand, within CA264_15410 at 3610.229 kb on + strand, within CA264_15410 at 3610.352 kb on - strand, within CA264_15410 at 3610.413 kb on + strand, within CA264_15410 at 3610.416 kb on - strand, within CA264_15410 at 3610.467 kb on + strand, within CA264_15410 at 3610.581 kb on + strand at 3610.581 kb on + strand at 3610.581 kb on + strand at 3610.582 kb on - strand at 3610.582 kb on - strand at 3610.588 kb on - strand at 3610.650 kb on - strand at 3610.650 kb on - strand at 3610.650 kb on - strand at 3610.789 kb on + strand, within CA264_15415 at 3610.789 kb on + strand, within CA264_15415 at 3610.808 kb on - strand, within CA264_15415 at 3610.876 kb on - strand, within CA264_15415 at 3610.962 kb on + strand, within CA264_15415 at 3611.168 kb on - strand, within CA264_15415 at 3611.341 kb on + strand, within CA264_15415 at 3611.342 kb on - strand, within CA264_15415 at 3611.342 kb on - strand, within CA264_15415 at 3611.409 kb on - strand, within CA264_15415 at 3611.409 kb on - strand, within CA264_15415 at 3611.443 kb on + strand, within CA264_15415 at 3611.613 kb on + strand at 3611.615 kb on + strand at 3611.620 kb on + strand at 3611.621 kb on - strand at 3611.743 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM remove 3,609,671 - CA264_15405 0.85 +0.5 3,609,728 + +0.1 3,609,728 + +0.2 3,609,729 - +0.2 3,609,814 + -0.1 3,609,815 - +0.3 3,609,904 + -0.7 3,610,096 + CA264_15410 0.20 +0.1 3,610,097 - CA264_15410 0.20 +0.5 3,610,097 - CA264_15410 0.20 -0.5 3,610,139 + CA264_15410 0.27 -0.3 3,610,140 - CA264_15410 0.27 +0.2 3,610,143 + CA264_15410 0.27 -0.3 3,610,144 - CA264_15410 0.27 -0.7 3,610,146 - CA264_15410 0.28 -0.7 3,610,178 + CA264_15410 0.33 +0.3 3,610,178 + CA264_15410 0.33 +0.2 3,610,178 + CA264_15410 0.33 +0.5 3,610,225 - CA264_15410 0.40 +0.6 3,610,226 + CA264_15410 0.40 +1.0 3,610,227 - CA264_15410 0.40 -0.8 3,610,229 + CA264_15410 0.41 -0.7 3,610,229 + CA264_15410 0.41 -0.4 3,610,352 - CA264_15410 0.60 -0.4 3,610,413 + CA264_15410 0.70 -0.5 3,610,416 - CA264_15410 0.70 -0.5 3,610,467 + CA264_15410 0.78 -0.3 3,610,581 + +1.4 3,610,581 + +1.9 3,610,581 + -0.9 3,610,582 - +0.2 3,610,582 - -0.4 3,610,588 - +0.3 3,610,650 - +1.7 3,610,650 - -0.0 3,610,650 - +0.1 3,610,789 + CA264_15415 0.13 +0.6 3,610,789 + CA264_15415 0.13 +0.0 3,610,808 - CA264_15415 0.15 -0.4 3,610,876 - CA264_15415 0.23 -0.5 3,610,962 + CA264_15415 0.32 -0.4 3,611,168 - CA264_15415 0.55 -1.0 3,611,341 + CA264_15415 0.74 -0.2 3,611,342 - CA264_15415 0.74 -0.3 3,611,342 - CA264_15415 0.74 +1.5 3,611,409 - CA264_15415 0.82 -0.1 3,611,409 - CA264_15415 0.82 -0.4 3,611,443 + CA264_15415 0.86 -1.2 3,611,613 + -0.6 3,611,615 + +0.6 3,611,620 + +0.2 3,611,621 - -0.5 3,611,743 + +1.1
Or see this region's nucleotide sequence