Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15410

Experiment: m.b. Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15405 and CA264_15410 are separated by 153 nucleotidesCA264_15410 and CA264_15415 are separated by 62 nucleotides CA264_15405: CA264_15405 - oxidoreductase, at 3,608,821 to 3,609,816 _15405 CA264_15410: CA264_15410 - hypothetical protein, at 3,609,970 to 3,610,605 _15410 CA264_15415: CA264_15415 - 1-aminocyclopropane-1-carboxylate deaminase, at 3,610,668 to 3,611,573 _15415 Position (kb) 3609 3610 3611Strain fitness (log2 ratio) -1 0 1 2at 3609.005 kb on + strand, within CA264_15405at 3609.086 kb on + strand, within CA264_15405at 3609.087 kb on - strand, within CA264_15405at 3609.087 kb on - strand, within CA264_15405at 3609.087 kb on - strand, within CA264_15405at 3609.087 kb on - strand, within CA264_15405at 3609.090 kb on + strand, within CA264_15405at 3609.091 kb on - strand, within CA264_15405at 3609.163 kb on - strand, within CA264_15405at 3609.174 kb on + strand, within CA264_15405at 3609.232 kb on + strand, within CA264_15405at 3609.276 kb on + strand, within CA264_15405at 3609.276 kb on + strand, within CA264_15405at 3609.300 kb on - strand, within CA264_15405at 3609.300 kb on - strand, within CA264_15405at 3609.300 kb on - strand, within CA264_15405at 3609.308 kb on + strand, within CA264_15405at 3609.309 kb on - strand, within CA264_15405at 3609.309 kb on - strand, within CA264_15405at 3609.392 kb on - strand, within CA264_15405at 3609.447 kb on + strand, within CA264_15405at 3609.447 kb on + strand, within CA264_15405at 3609.469 kb on + strand, within CA264_15405at 3609.476 kb on + strand, within CA264_15405at 3609.492 kb on - strand, within CA264_15405at 3609.648 kb on - strand, within CA264_15405at 3609.671 kb on - strand, within CA264_15405at 3609.728 kb on + strandat 3609.728 kb on + strandat 3609.729 kb on - strandat 3609.814 kb on + strandat 3609.815 kb on - strandat 3609.904 kb on + strandat 3610.096 kb on + strand, within CA264_15410at 3610.097 kb on - strand, within CA264_15410at 3610.097 kb on - strand, within CA264_15410at 3610.139 kb on + strand, within CA264_15410at 3610.140 kb on - strand, within CA264_15410at 3610.143 kb on + strand, within CA264_15410at 3610.144 kb on - strand, within CA264_15410at 3610.146 kb on - strand, within CA264_15410at 3610.178 kb on + strand, within CA264_15410at 3610.178 kb on + strand, within CA264_15410at 3610.178 kb on + strand, within CA264_15410at 3610.225 kb on - strand, within CA264_15410at 3610.226 kb on + strand, within CA264_15410at 3610.227 kb on - strand, within CA264_15410at 3610.229 kb on + strand, within CA264_15410at 3610.229 kb on + strand, within CA264_15410at 3610.352 kb on - strand, within CA264_15410at 3610.413 kb on + strand, within CA264_15410at 3610.416 kb on - strand, within CA264_15410at 3610.467 kb on + strand, within CA264_15410at 3610.581 kb on + strandat 3610.581 kb on + strandat 3610.581 kb on + strandat 3610.582 kb on - strandat 3610.582 kb on - strandat 3610.588 kb on - strandat 3610.650 kb on - strandat 3610.650 kb on - strandat 3610.650 kb on - strandat 3610.789 kb on + strand, within CA264_15415at 3610.789 kb on + strand, within CA264_15415at 3610.808 kb on - strand, within CA264_15415at 3610.876 kb on - strand, within CA264_15415at 3610.962 kb on + strand, within CA264_15415at 3611.168 kb on - strand, within CA264_15415at 3611.341 kb on + strand, within CA264_15415at 3611.342 kb on - strand, within CA264_15415at 3611.342 kb on - strand, within CA264_15415at 3611.409 kb on - strand, within CA264_15415at 3611.409 kb on - strand, within CA264_15415at 3611.443 kb on + strand, within CA264_15415

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM
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3,609,005 + CA264_15405 0.18 -0.3
3,609,086 + CA264_15405 0.27 +0.6
3,609,087 - CA264_15405 0.27 +0.3
3,609,087 - CA264_15405 0.27 -0.6
3,609,087 - CA264_15405 0.27 -1.2
3,609,087 - CA264_15405 0.27 +0.2
3,609,090 + CA264_15405 0.27 -0.5
3,609,091 - CA264_15405 0.27 -0.3
3,609,163 - CA264_15405 0.34 +0.3
3,609,174 + CA264_15405 0.35 -0.1
3,609,232 + CA264_15405 0.41 +2.1
3,609,276 + CA264_15405 0.46 +0.3
3,609,276 + CA264_15405 0.46 -0.0
3,609,300 - CA264_15405 0.48 -1.5
3,609,300 - CA264_15405 0.48 -0.4
3,609,300 - CA264_15405 0.48 -0.4
3,609,308 + CA264_15405 0.49 -1.2
3,609,309 - CA264_15405 0.49 -0.3
3,609,309 - CA264_15405 0.49 -0.7
3,609,392 - CA264_15405 0.57 +0.4
3,609,447 + CA264_15405 0.63 +0.6
3,609,447 + CA264_15405 0.63 -0.8
3,609,469 + CA264_15405 0.65 -0.5
3,609,476 + CA264_15405 0.66 -0.4
3,609,492 - CA264_15405 0.67 -1.4
3,609,648 - CA264_15405 0.83 +0.2
3,609,671 - CA264_15405 0.85 +0.5
3,609,728 + +0.1
3,609,728 + +0.2
3,609,729 - +0.2
3,609,814 + -0.1
3,609,815 - +0.3
3,609,904 + -0.7
3,610,096 + CA264_15410 0.20 +0.1
3,610,097 - CA264_15410 0.20 +0.5
3,610,097 - CA264_15410 0.20 -0.5
3,610,139 + CA264_15410 0.27 -0.3
3,610,140 - CA264_15410 0.27 +0.2
3,610,143 + CA264_15410 0.27 -0.3
3,610,144 - CA264_15410 0.27 -0.7
3,610,146 - CA264_15410 0.28 -0.7
3,610,178 + CA264_15410 0.33 +0.3
3,610,178 + CA264_15410 0.33 +0.2
3,610,178 + CA264_15410 0.33 +0.5
3,610,225 - CA264_15410 0.40 +0.6
3,610,226 + CA264_15410 0.40 +1.0
3,610,227 - CA264_15410 0.40 -0.8
3,610,229 + CA264_15410 0.41 -0.7
3,610,229 + CA264_15410 0.41 -0.4
3,610,352 - CA264_15410 0.60 -0.4
3,610,413 + CA264_15410 0.70 -0.5
3,610,416 - CA264_15410 0.70 -0.5
3,610,467 + CA264_15410 0.78 -0.3
3,610,581 + +1.4
3,610,581 + +1.9
3,610,581 + -0.9
3,610,582 - +0.2
3,610,582 - -0.4
3,610,588 - +0.3
3,610,650 - +1.7
3,610,650 - -0.0
3,610,650 - +0.1
3,610,789 + CA264_15415 0.13 +0.6
3,610,789 + CA264_15415 0.13 +0.0
3,610,808 - CA264_15415 0.15 -0.4
3,610,876 - CA264_15415 0.23 -0.5
3,610,962 + CA264_15415 0.32 -0.4
3,611,168 - CA264_15415 0.55 -1.0
3,611,341 + CA264_15415 0.74 -0.2
3,611,342 - CA264_15415 0.74 -0.3
3,611,342 - CA264_15415 0.74 +1.5
3,611,409 - CA264_15415 0.82 -0.1
3,611,409 - CA264_15415 0.82 -0.4
3,611,443 + CA264_15415 0.86 -1.2

Or see this region's nucleotide sequence