Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13570

Experiment: m.b. Cobalt chloride 0.3 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_13565 and CA264_13570 are separated by 307 nucleotidesCA264_13570 and CA264_13575 are separated by 245 nucleotides CA264_13565: CA264_13565 - serine protease, at 3,165,667 to 3,167,916 _13565 CA264_13570: CA264_13570 - beta-N-acetylhexosaminidase, at 3,168,224 to 3,170,557 _13570 CA264_13575: CA264_13575 - hypothetical protein, at 3,170,803 to 3,171,858 _13575 Position (kb) 3168 3169 3170 3171Strain fitness (log2 ratio) -2 -1 0 1 2at 3167.248 kb on + strand, within CA264_13565at 3167.249 kb on - strand, within CA264_13565at 3167.285 kb on + strand, within CA264_13565at 3167.285 kb on + strand, within CA264_13565at 3167.285 kb on + strand, within CA264_13565at 3167.286 kb on - strand, within CA264_13565at 3167.286 kb on - strand, within CA264_13565at 3167.287 kb on + strand, within CA264_13565at 3167.287 kb on + strand, within CA264_13565at 3167.287 kb on + strand, within CA264_13565at 3167.288 kb on - strand, within CA264_13565at 3167.301 kb on + strand, within CA264_13565at 3167.302 kb on - strand, within CA264_13565at 3167.307 kb on + strand, within CA264_13565at 3167.307 kb on + strand, within CA264_13565at 3167.308 kb on - strand, within CA264_13565at 3167.341 kb on + strand, within CA264_13565at 3167.341 kb on + strand, within CA264_13565at 3167.341 kb on + strand, within CA264_13565at 3167.342 kb on - strand, within CA264_13565at 3167.343 kb on + strand, within CA264_13565at 3167.343 kb on + strand, within CA264_13565at 3167.366 kb on - strand, within CA264_13565at 3167.371 kb on + strand, within CA264_13565at 3167.375 kb on - strand, within CA264_13565at 3167.456 kb on - strand, within CA264_13565at 3167.456 kb on - strand, within CA264_13565at 3167.490 kb on + strand, within CA264_13565at 3167.490 kb on + strand, within CA264_13565at 3167.695 kb on - strandat 3167.738 kb on + strandat 3167.739 kb on - strandat 3168.016 kb on - strandat 3168.164 kb on + strandat 3168.165 kb on - strandat 3168.184 kb on - strandat 3168.243 kb on + strandat 3168.243 kb on + strandat 3168.243 kb on + strandat 3168.250 kb on - strandat 3168.273 kb on + strandat 3168.274 kb on - strandat 3168.284 kb on + strandat 3168.285 kb on - strandat 3168.444 kb on + strandat 3168.462 kb on + strand, within CA264_13570at 3168.462 kb on + strand, within CA264_13570at 3168.561 kb on - strand, within CA264_13570at 3168.561 kb on - strand, within CA264_13570at 3168.562 kb on + strand, within CA264_13570at 3168.698 kb on - strand, within CA264_13570at 3168.924 kb on - strand, within CA264_13570at 3169.174 kb on + strand, within CA264_13570at 3169.226 kb on + strand, within CA264_13570at 3169.226 kb on + strand, within CA264_13570at 3169.226 kb on + strand, within CA264_13570at 3169.226 kb on + strand, within CA264_13570at 3169.227 kb on - strand, within CA264_13570at 3169.227 kb on - strand, within CA264_13570at 3169.227 kb on - strand, within CA264_13570at 3169.338 kb on - strand, within CA264_13570at 3169.366 kb on - strand, within CA264_13570at 3169.366 kb on - strand, within CA264_13570at 3169.438 kb on + strand, within CA264_13570at 3169.491 kb on - strand, within CA264_13570at 3169.491 kb on - strand, within CA264_13570at 3169.520 kb on + strand, within CA264_13570at 3169.593 kb on + strand, within CA264_13570at 3169.593 kb on + strand, within CA264_13570at 3169.643 kb on + strand, within CA264_13570at 3169.643 kb on + strand, within CA264_13570at 3169.645 kb on + strand, within CA264_13570at 3169.679 kb on + strand, within CA264_13570at 3169.680 kb on - strand, within CA264_13570at 3169.702 kb on - strand, within CA264_13570at 3169.702 kb on - strand, within CA264_13570at 3169.702 kb on - strand, within CA264_13570at 3169.702 kb on - strand, within CA264_13570at 3169.702 kb on - strand, within CA264_13570at 3169.706 kb on + strand, within CA264_13570at 3169.706 kb on + strand, within CA264_13570at 3169.706 kb on + strand, within CA264_13570at 3169.706 kb on + strand, within CA264_13570at 3169.707 kb on - strand, within CA264_13570at 3169.714 kb on + strand, within CA264_13570at 3169.723 kb on + strand, within CA264_13570at 3169.814 kb on + strand, within CA264_13570at 3169.831 kb on - strand, within CA264_13570at 3169.836 kb on - strand, within CA264_13570at 3169.938 kb on - strand, within CA264_13570at 3169.938 kb on - strand, within CA264_13570at 3169.940 kb on + strand, within CA264_13570at 3169.941 kb on - strand, within CA264_13570at 3170.106 kb on + strand, within CA264_13570at 3170.152 kb on + strand, within CA264_13570at 3170.152 kb on + strand, within CA264_13570at 3170.153 kb on - strand, within CA264_13570at 3170.154 kb on + strand, within CA264_13570at 3170.154 kb on + strand, within CA264_13570at 3170.154 kb on + strand, within CA264_13570at 3170.155 kb on - strand, within CA264_13570at 3170.190 kb on - strand, within CA264_13570at 3170.190 kb on - strand, within CA264_13570at 3170.326 kb on - strandat 3170.330 kb on + strandat 3170.331 kb on - strandat 3170.331 kb on - strandat 3170.331 kb on - strandat 3170.368 kb on + strandat 3170.368 kb on + strandat 3170.410 kb on - strandat 3170.456 kb on + strandat 3170.457 kb on - strandat 3170.468 kb on - strandat 3170.575 kb on - strandat 3170.646 kb on - strandat 3170.769 kb on + strandat 3170.867 kb on + strandat 3170.867 kb on + strandat 3170.979 kb on + strand, within CA264_13575at 3170.979 kb on + strand, within CA264_13575at 3171.016 kb on + strand, within CA264_13575at 3171.016 kb on + strand, within CA264_13575at 3171.016 kb on + strand, within CA264_13575at 3171.017 kb on - strand, within CA264_13575at 3171.017 kb on - strand, within CA264_13575at 3171.066 kb on - strand, within CA264_13575at 3171.100 kb on + strand, within CA264_13575at 3171.100 kb on + strand, within CA264_13575at 3171.108 kb on - strand, within CA264_13575at 3171.214 kb on - strand, within CA264_13575at 3171.214 kb on - strand, within CA264_13575at 3171.338 kb on + strand, within CA264_13575at 3171.339 kb on - strand, within CA264_13575at 3171.339 kb on - strand, within CA264_13575at 3171.341 kb on + strand, within CA264_13575at 3171.341 kb on + strand, within CA264_13575at 3171.392 kb on + strand, within CA264_13575at 3171.392 kb on + strand, within CA264_13575at 3171.407 kb on - strand, within CA264_13575at 3171.498 kb on + strand, within CA264_13575at 3171.498 kb on + strand, within CA264_13575at 3171.499 kb on - strand, within CA264_13575at 3171.500 kb on + strand, within CA264_13575at 3171.500 kb on + strand, within CA264_13575at 3171.501 kb on - strand, within CA264_13575at 3171.536 kb on + strand, within CA264_13575at 3171.537 kb on - strand, within CA264_13575at 3171.537 kb on - strand, within CA264_13575

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM
remove
3,167,248 + CA264_13565 0.70 -0.7
3,167,249 - CA264_13565 0.70 +0.4
3,167,285 + CA264_13565 0.72 -0.8
3,167,285 + CA264_13565 0.72 -1.2
3,167,285 + CA264_13565 0.72 -0.1
3,167,286 - CA264_13565 0.72 -0.1
3,167,286 - CA264_13565 0.72 +0.8
3,167,287 + CA264_13565 0.72 +1.5
3,167,287 + CA264_13565 0.72 -0.2
3,167,287 + CA264_13565 0.72 -0.2
3,167,288 - CA264_13565 0.72 +0.1
3,167,301 + CA264_13565 0.73 -1.3
3,167,302 - CA264_13565 0.73 -0.0
3,167,307 + CA264_13565 0.73 -0.9
3,167,307 + CA264_13565 0.73 -0.5
3,167,308 - CA264_13565 0.73 -0.2
3,167,341 + CA264_13565 0.74 -0.5
3,167,341 + CA264_13565 0.74 -0.8
3,167,341 + CA264_13565 0.74 -0.2
3,167,342 - CA264_13565 0.74 +0.4
3,167,343 + CA264_13565 0.74 -0.2
3,167,343 + CA264_13565 0.74 -0.9
3,167,366 - CA264_13565 0.76 +0.1
3,167,371 + CA264_13565 0.76 -2.0
3,167,375 - CA264_13565 0.76 +0.9
3,167,456 - CA264_13565 0.80 +0.5
3,167,456 - CA264_13565 0.80 -0.5
3,167,490 + CA264_13565 0.81 +0.5
3,167,490 + CA264_13565 0.81 -0.8
3,167,695 - -0.5
3,167,738 + -0.5
3,167,739 - -0.4
3,168,016 - -0.2
3,168,164 + -0.8
3,168,165 - -0.6
3,168,184 - +0.3
3,168,243 + +0.3
3,168,243 + -0.8
3,168,243 + +2.1
3,168,250 - -0.5
3,168,273 + -0.3
3,168,274 - -1.0
3,168,284 + -0.1
3,168,285 - +0.0
3,168,444 + -1.0
3,168,462 + CA264_13570 0.10 -0.4
3,168,462 + CA264_13570 0.10 +0.1
3,168,561 - CA264_13570 0.14 -2.2
3,168,561 - CA264_13570 0.14 -0.0
3,168,562 + CA264_13570 0.14 -0.6
3,168,698 - CA264_13570 0.20 +0.1
3,168,924 - CA264_13570 0.30 -0.4
3,169,174 + CA264_13570 0.41 -0.6
3,169,226 + CA264_13570 0.43 -1.3
3,169,226 + CA264_13570 0.43 -0.5
3,169,226 + CA264_13570 0.43 -0.2
3,169,226 + CA264_13570 0.43 +0.8
3,169,227 - CA264_13570 0.43 -0.1
3,169,227 - CA264_13570 0.43 +0.4
3,169,227 - CA264_13570 0.43 +1.0
3,169,338 - CA264_13570 0.48 -0.0
3,169,366 - CA264_13570 0.49 -0.2
3,169,366 - CA264_13570 0.49 +0.1
3,169,438 + CA264_13570 0.52 -0.3
3,169,491 - CA264_13570 0.54 +0.7
3,169,491 - CA264_13570 0.54 -0.0
3,169,520 + CA264_13570 0.56 +0.1
3,169,593 + CA264_13570 0.59 +0.4
3,169,593 + CA264_13570 0.59 -0.3
3,169,643 + CA264_13570 0.61 +1.3
3,169,643 + CA264_13570 0.61 +0.8
3,169,645 + CA264_13570 0.61 +1.0
3,169,679 + CA264_13570 0.62 -1.5
3,169,680 - CA264_13570 0.62 -0.4
3,169,702 - CA264_13570 0.63 -0.2
3,169,702 - CA264_13570 0.63 -0.0
3,169,702 - CA264_13570 0.63 -0.6
3,169,702 - CA264_13570 0.63 +0.5
3,169,702 - CA264_13570 0.63 +0.4
3,169,706 + CA264_13570 0.63 -0.2
3,169,706 + CA264_13570 0.63 -1.0
3,169,706 + CA264_13570 0.63 +1.0
3,169,706 + CA264_13570 0.63 -1.6
3,169,707 - CA264_13570 0.64 -0.2
3,169,714 + CA264_13570 0.64 +0.2
3,169,723 + CA264_13570 0.64 +0.7
3,169,814 + CA264_13570 0.68 -0.5
3,169,831 - CA264_13570 0.69 -0.1
3,169,836 - CA264_13570 0.69 -0.4
3,169,938 - CA264_13570 0.73 +0.5
3,169,938 - CA264_13570 0.73 -0.7
3,169,940 + CA264_13570 0.74 -0.0
3,169,941 - CA264_13570 0.74 -0.3
3,170,106 + CA264_13570 0.81 -0.0
3,170,152 + CA264_13570 0.83 -0.2
3,170,152 + CA264_13570 0.83 +1.2
3,170,153 - CA264_13570 0.83 -0.9
3,170,154 + CA264_13570 0.83 -1.0
3,170,154 + CA264_13570 0.83 -0.6
3,170,154 + CA264_13570 0.83 -0.0
3,170,155 - CA264_13570 0.83 -0.2
3,170,190 - CA264_13570 0.84 -0.4
3,170,190 - CA264_13570 0.84 +0.2
3,170,326 - -0.9
3,170,330 + -0.4
3,170,331 - -1.5
3,170,331 - -0.3
3,170,331 - -0.7
3,170,368 + -0.3
3,170,368 + -0.4
3,170,410 - -0.4
3,170,456 + -0.4
3,170,457 - -0.0
3,170,468 - -0.1
3,170,575 - -0.4
3,170,646 - -0.9
3,170,769 + +0.8
3,170,867 + -0.3
3,170,867 + +0.3
3,170,979 + CA264_13575 0.17 -0.8
3,170,979 + CA264_13575 0.17 -0.4
3,171,016 + CA264_13575 0.20 -0.4
3,171,016 + CA264_13575 0.20 +0.1
3,171,016 + CA264_13575 0.20 -0.0
3,171,017 - CA264_13575 0.20 -0.6
3,171,017 - CA264_13575 0.20 -0.1
3,171,066 - CA264_13575 0.25 -0.2
3,171,100 + CA264_13575 0.28 -1.0
3,171,100 + CA264_13575 0.28 -0.0
3,171,108 - CA264_13575 0.29 -0.0
3,171,214 - CA264_13575 0.39 +0.1
3,171,214 - CA264_13575 0.39 -0.0
3,171,338 + CA264_13575 0.51 -1.0
3,171,339 - CA264_13575 0.51 -1.0
3,171,339 - CA264_13575 0.51 +0.3
3,171,341 + CA264_13575 0.51 +0.5
3,171,341 + CA264_13575 0.51 -0.4
3,171,392 + CA264_13575 0.56 -1.5
3,171,392 + CA264_13575 0.56 +0.2
3,171,407 - CA264_13575 0.57 -0.8
3,171,498 + CA264_13575 0.66 -1.9
3,171,498 + CA264_13575 0.66 +0.3
3,171,499 - CA264_13575 0.66 +0.3
3,171,500 + CA264_13575 0.66 -0.3
3,171,500 + CA264_13575 0.66 -0.6
3,171,501 - CA264_13575 0.66 -0.4
3,171,536 + CA264_13575 0.69 -0.3
3,171,537 - CA264_13575 0.70 -0.4
3,171,537 - CA264_13575 0.70 -0.9

Or see this region's nucleotide sequence