Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13450

Experiment: m.b. Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13450 and CA264_13455 are separated by 120 nucleotidesCA264_13455 and CA264_13460 are separated by 627 nucleotides CA264_13450: CA264_13450 - hypothetical protein, at 3,140,784 to 3,144,110 _13450 CA264_13455: CA264_13455 - tRNA-Ala, at 3,144,231 to 3,144,307 _13455 CA264_13460: CA264_13460 - hypothetical protein, at 3,144,935 to 3,145,369 _13460 Position (kb) 3140 3141 3142 3143 3144 3145Strain fitness (log2 ratio) -1 0 1 2at 3139.809 kb on - strandat 3139.900 kb on + strandat 3139.975 kb on - strandat 3140.307 kb on + strandat 3140.308 kb on - strandat 3140.308 kb on - strandat 3140.308 kb on - strandat 3140.312 kb on + strandat 3140.317 kb on + strandat 3140.317 kb on + strandat 3140.318 kb on - strandat 3140.320 kb on - strandat 3140.320 kb on - strandat 3140.321 kb on + strandat 3140.322 kb on - strandat 3140.437 kb on - strandat 3140.449 kb on + strandat 3140.450 kb on - strandat 3140.630 kb on - strandat 3140.733 kb on + strandat 3140.752 kb on + strandat 3140.799 kb on - strandat 3140.819 kb on + strandat 3140.819 kb on + strandat 3140.835 kb on - strandat 3140.835 kb on - strandat 3140.835 kb on - strandat 3140.837 kb on + strandat 3140.914 kb on + strandat 3141.039 kb on + strandat 3141.040 kb on - strandat 3141.104 kb on + strandat 3141.105 kb on - strandat 3141.144 kb on + strand, within CA264_13450at 3141.407 kb on + strand, within CA264_13450at 3141.407 kb on + strand, within CA264_13450at 3141.407 kb on + strand, within CA264_13450at 3141.408 kb on - strand, within CA264_13450at 3141.425 kb on + strand, within CA264_13450at 3141.425 kb on + strand, within CA264_13450at 3141.443 kb on + strand, within CA264_13450at 3141.444 kb on - strand, within CA264_13450at 3141.654 kb on + strand, within CA264_13450at 3141.655 kb on - strand, within CA264_13450at 3141.660 kb on + strand, within CA264_13450at 3141.661 kb on - strand, within CA264_13450at 3141.661 kb on - strand, within CA264_13450at 3141.661 kb on - strand, within CA264_13450at 3141.695 kb on + strand, within CA264_13450at 3141.723 kb on - strand, within CA264_13450at 3141.896 kb on + strand, within CA264_13450at 3141.907 kb on - strand, within CA264_13450at 3141.957 kb on - strand, within CA264_13450at 3142.001 kb on + strand, within CA264_13450at 3142.001 kb on + strand, within CA264_13450at 3142.001 kb on + strand, within CA264_13450at 3142.001 kb on + strand, within CA264_13450at 3142.002 kb on - strand, within CA264_13450at 3142.024 kb on - strand, within CA264_13450at 3142.069 kb on + strand, within CA264_13450at 3142.069 kb on + strand, within CA264_13450at 3142.090 kb on - strand, within CA264_13450at 3142.177 kb on - strand, within CA264_13450at 3142.304 kb on + strand, within CA264_13450at 3142.317 kb on - strand, within CA264_13450at 3142.329 kb on + strand, within CA264_13450at 3142.330 kb on - strand, within CA264_13450at 3142.385 kb on + strand, within CA264_13450at 3142.404 kb on + strand, within CA264_13450at 3142.405 kb on - strand, within CA264_13450at 3142.416 kb on + strand, within CA264_13450at 3142.419 kb on - strand, within CA264_13450at 3142.479 kb on + strand, within CA264_13450at 3142.514 kb on + strand, within CA264_13450at 3142.518 kb on + strand, within CA264_13450at 3142.519 kb on - strand, within CA264_13450at 3142.519 kb on - strand, within CA264_13450at 3142.522 kb on - strand, within CA264_13450at 3142.522 kb on - strand, within CA264_13450at 3142.525 kb on + strand, within CA264_13450at 3142.526 kb on - strand, within CA264_13450at 3142.526 kb on - strand, within CA264_13450at 3142.536 kb on - strand, within CA264_13450at 3142.570 kb on + strand, within CA264_13450at 3142.593 kb on + strand, within CA264_13450at 3142.639 kb on - strand, within CA264_13450at 3142.652 kb on - strand, within CA264_13450at 3142.722 kb on + strand, within CA264_13450at 3142.729 kb on + strand, within CA264_13450at 3142.761 kb on + strand, within CA264_13450at 3142.762 kb on - strand, within CA264_13450at 3142.764 kb on + strand, within CA264_13450at 3142.764 kb on + strand, within CA264_13450at 3142.765 kb on - strand, within CA264_13450at 3142.784 kb on + strand, within CA264_13450at 3142.784 kb on + strand, within CA264_13450at 3142.862 kb on - strand, within CA264_13450at 3142.878 kb on + strand, within CA264_13450at 3142.895 kb on - strand, within CA264_13450at 3142.909 kb on - strand, within CA264_13450at 3142.950 kb on + strand, within CA264_13450at 3142.983 kb on - strand, within CA264_13450at 3142.983 kb on - strand, within CA264_13450at 3142.995 kb on + strand, within CA264_13450at 3143.023 kb on + strand, within CA264_13450at 3143.068 kb on + strand, within CA264_13450at 3143.121 kb on - strand, within CA264_13450at 3143.124 kb on + strand, within CA264_13450at 3143.124 kb on + strand, within CA264_13450at 3143.125 kb on - strand, within CA264_13450at 3143.152 kb on - strand, within CA264_13450at 3143.152 kb on - strand, within CA264_13450at 3143.188 kb on + strand, within CA264_13450at 3143.217 kb on + strand, within CA264_13450at 3143.220 kb on - strand, within CA264_13450at 3143.253 kb on - strand, within CA264_13450at 3143.256 kb on + strand, within CA264_13450at 3143.257 kb on - strand, within CA264_13450at 3143.261 kb on - strand, within CA264_13450at 3143.287 kb on - strand, within CA264_13450at 3143.295 kb on - strand, within CA264_13450at 3143.347 kb on - strand, within CA264_13450at 3143.352 kb on + strand, within CA264_13450at 3143.419 kb on - strand, within CA264_13450at 3143.463 kb on + strand, within CA264_13450at 3143.486 kb on - strand, within CA264_13450at 3143.498 kb on + strand, within CA264_13450at 3143.511 kb on + strand, within CA264_13450at 3143.512 kb on - strand, within CA264_13450at 3143.565 kb on - strand, within CA264_13450at 3143.640 kb on + strand, within CA264_13450at 3143.641 kb on - strand, within CA264_13450at 3143.741 kb on - strand, within CA264_13450at 3143.847 kb on + strandat 3143.848 kb on - strandat 3143.848 kb on - strandat 3143.851 kb on + strandat 3143.934 kb on + strandat 3143.934 kb on + strandat 3143.999 kb on + strandat 3144.009 kb on - strandat 3144.049 kb on - strandat 3144.064 kb on - strandat 3144.094 kb on + strandat 3144.094 kb on + strandat 3144.095 kb on - strandat 3144.095 kb on - strandat 3144.095 kb on - strandat 3144.173 kb on + strandat 3144.375 kb on + strandat 3144.400 kb on - strandat 3144.403 kb on + strandat 3144.442 kb on + strandat 3144.443 kb on - strandat 3144.468 kb on - strandat 3144.468 kb on - strandat 3144.474 kb on + strandat 3144.618 kb on - strandat 3144.629 kb on - strandat 3144.631 kb on + strandat 3144.631 kb on + strandat 3144.632 kb on - strandat 3144.632 kb on - strandat 3144.632 kb on - strandat 3144.678 kb on - strandat 3144.682 kb on - strandat 3144.682 kb on - strandat 3144.682 kb on - strandat 3144.694 kb on + strandat 3144.703 kb on + strandat 3144.705 kb on + strandat 3144.706 kb on - strandat 3144.706 kb on - strandat 3144.709 kb on + strandat 3144.712 kb on + strandat 3144.738 kb on + strandat 3144.741 kb on + strandat 3144.743 kb on + strandat 3144.743 kb on + strandat 3144.743 kb on + strandat 3144.744 kb on - strandat 3144.830 kb on - strandat 3144.833 kb on + strandat 3144.833 kb on + strandat 3144.833 kb on + strandat 3144.834 kb on - strandat 3144.837 kb on + strandat 3144.898 kb on - strandat 3144.906 kb on - strandat 3144.934 kb on + strandat 3144.934 kb on + strandat 3144.979 kb on - strand, within CA264_13460

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM
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3,139,809 - -0.7
3,139,900 + +0.3
3,139,975 - +1.0
3,140,307 + +0.6
3,140,308 - +0.4
3,140,308 - +0.1
3,140,308 - -1.2
3,140,312 + -1.3
3,140,317 + -0.1
3,140,317 + +0.2
3,140,318 - +0.1
3,140,320 - +0.4
3,140,320 - +0.5
3,140,321 + -0.3
3,140,322 - -0.1
3,140,437 - +0.4
3,140,449 + +1.3
3,140,450 - -0.2
3,140,630 - -1.2
3,140,733 + +0.4
3,140,752 + +0.1
3,140,799 - -0.0
3,140,819 + -0.0
3,140,819 + +0.8
3,140,835 - -0.8
3,140,835 - +0.1
3,140,835 - -0.1
3,140,837 + +1.7
3,140,914 + -0.0
3,141,039 + +0.4
3,141,040 - +0.7
3,141,104 + +0.1
3,141,105 - -0.2
3,141,144 + CA264_13450 0.11 +0.9
3,141,407 + CA264_13450 0.19 -0.2
3,141,407 + CA264_13450 0.19 +0.4
3,141,407 + CA264_13450 0.19 -0.3
3,141,408 - CA264_13450 0.19 +0.9
3,141,425 + CA264_13450 0.19 -0.6
3,141,425 + CA264_13450 0.19 -0.7
3,141,443 + CA264_13450 0.20 -0.2
3,141,444 - CA264_13450 0.20 -0.4
3,141,654 + CA264_13450 0.26 -0.4
3,141,655 - CA264_13450 0.26 -0.4
3,141,660 + CA264_13450 0.26 -0.4
3,141,661 - CA264_13450 0.26 +2.0
3,141,661 - CA264_13450 0.26 +0.3
3,141,661 - CA264_13450 0.26 -0.2
3,141,695 + CA264_13450 0.27 -0.1
3,141,723 - CA264_13450 0.28 -0.7
3,141,896 + CA264_13450 0.33 +0.5
3,141,907 - CA264_13450 0.34 -0.2
3,141,957 - CA264_13450 0.35 -0.5
3,142,001 + CA264_13450 0.37 -1.0
3,142,001 + CA264_13450 0.37 -0.2
3,142,001 + CA264_13450 0.37 -0.7
3,142,001 + CA264_13450 0.37 -0.3
3,142,002 - CA264_13450 0.37 -0.2
3,142,024 - CA264_13450 0.37 -0.2
3,142,069 + CA264_13450 0.39 -0.2
3,142,069 + CA264_13450 0.39 -1.7
3,142,090 - CA264_13450 0.39 +0.3
3,142,177 - CA264_13450 0.42 -0.4
3,142,304 + CA264_13450 0.46 -0.5
3,142,317 - CA264_13450 0.46 -0.1
3,142,329 + CA264_13450 0.46 -0.1
3,142,330 - CA264_13450 0.46 -0.7
3,142,385 + CA264_13450 0.48 -0.5
3,142,404 + CA264_13450 0.49 -0.2
3,142,405 - CA264_13450 0.49 -0.5
3,142,416 + CA264_13450 0.49 +0.2
3,142,419 - CA264_13450 0.49 -0.9
3,142,479 + CA264_13450 0.51 +0.5
3,142,514 + CA264_13450 0.52 -0.6
3,142,518 + CA264_13450 0.52 +0.7
3,142,519 - CA264_13450 0.52 +0.1
3,142,519 - CA264_13450 0.52 -1.1
3,142,522 - CA264_13450 0.52 -0.3
3,142,522 - CA264_13450 0.52 +1.8
3,142,525 + CA264_13450 0.52 -0.8
3,142,526 - CA264_13450 0.52 +0.2
3,142,526 - CA264_13450 0.52 -0.4
3,142,536 - CA264_13450 0.53 -0.0
3,142,570 + CA264_13450 0.54 -0.1
3,142,593 + CA264_13450 0.54 -0.6
3,142,639 - CA264_13450 0.56 +0.7
3,142,652 - CA264_13450 0.56 +0.4
3,142,722 + CA264_13450 0.58 -0.1
3,142,729 + CA264_13450 0.58 -1.5
3,142,761 + CA264_13450 0.59 -0.2
3,142,762 - CA264_13450 0.59 +0.1
3,142,764 + CA264_13450 0.60 -0.5
3,142,764 + CA264_13450 0.60 -0.3
3,142,765 - CA264_13450 0.60 +0.7
3,142,784 + CA264_13450 0.60 -0.3
3,142,784 + CA264_13450 0.60 -0.5
3,142,862 - CA264_13450 0.62 +0.7
3,142,878 + CA264_13450 0.63 -0.3
3,142,895 - CA264_13450 0.63 +0.1
3,142,909 - CA264_13450 0.64 -0.8
3,142,950 + CA264_13450 0.65 -0.2
3,142,983 - CA264_13450 0.66 -0.5
3,142,983 - CA264_13450 0.66 -1.0
3,142,995 + CA264_13450 0.66 -0.4
3,143,023 + CA264_13450 0.67 +0.0
3,143,068 + CA264_13450 0.69 -0.6
3,143,121 - CA264_13450 0.70 -0.9
3,143,124 + CA264_13450 0.70 +0.1
3,143,124 + CA264_13450 0.70 +0.5
3,143,125 - CA264_13450 0.70 -0.1
3,143,152 - CA264_13450 0.71 -0.3
3,143,152 - CA264_13450 0.71 -0.4
3,143,188 + CA264_13450 0.72 -0.2
3,143,217 + CA264_13450 0.73 +1.5
3,143,220 - CA264_13450 0.73 +0.3
3,143,253 - CA264_13450 0.74 +0.1
3,143,256 + CA264_13450 0.74 -0.3
3,143,257 - CA264_13450 0.74 +0.5
3,143,261 - CA264_13450 0.74 -1.3
3,143,287 - CA264_13450 0.75 -1.3
3,143,295 - CA264_13450 0.75 -0.2
3,143,347 - CA264_13450 0.77 +0.9
3,143,352 + CA264_13450 0.77 -0.1
3,143,419 - CA264_13450 0.79 +0.7
3,143,463 + CA264_13450 0.81 -1.5
3,143,486 - CA264_13450 0.81 +0.4
3,143,498 + CA264_13450 0.82 +1.7
3,143,511 + CA264_13450 0.82 -0.4
3,143,512 - CA264_13450 0.82 +0.8
3,143,565 - CA264_13450 0.84 -1.1
3,143,640 + CA264_13450 0.86 +0.5
3,143,641 - CA264_13450 0.86 -0.3
3,143,741 - CA264_13450 0.89 -0.0
3,143,847 + +1.0
3,143,848 - +0.8
3,143,848 - +0.4
3,143,851 + +0.4
3,143,934 + -1.2
3,143,934 + -0.2
3,143,999 + +0.7
3,144,009 - +0.4
3,144,049 - -0.3
3,144,064 - +0.1
3,144,094 + -0.7
3,144,094 + -0.2
3,144,095 - -0.2
3,144,095 - +1.3
3,144,095 - -0.5
3,144,173 + -0.7
3,144,375 + -0.9
3,144,400 - +0.1
3,144,403 + -1.3
3,144,442 + -0.2
3,144,443 - -0.6
3,144,468 - +0.1
3,144,468 - +0.8
3,144,474 + -0.6
3,144,618 - -0.5
3,144,629 - -0.6
3,144,631 + +0.7
3,144,631 + -0.6
3,144,632 - -0.8
3,144,632 - +0.1
3,144,632 - -0.6
3,144,678 - +0.0
3,144,682 - +1.1
3,144,682 - -0.7
3,144,682 - -1.0
3,144,694 + +0.2
3,144,703 + +0.1
3,144,705 + -0.9
3,144,706 - -0.4
3,144,706 - +0.7
3,144,709 + -0.5
3,144,712 + +1.3
3,144,738 + -0.5
3,144,741 + +0.4
3,144,743 + -0.6
3,144,743 + +0.8
3,144,743 + +0.2
3,144,744 - -0.0
3,144,830 - -0.1
3,144,833 + +0.2
3,144,833 + -0.7
3,144,833 + +0.2
3,144,834 - -0.2
3,144,837 + +0.3
3,144,898 - +0.3
3,144,906 - +1.5
3,144,934 + +0.5
3,144,934 + -0.7
3,144,979 - CA264_13460 0.10 -0.9

Or see this region's nucleotide sequence