Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12010

Experiment: m.b. Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12000 and CA264_12005 are separated by 56 nucleotidesCA264_12005 and CA264_12010 are separated by 241 nucleotidesCA264_12010 and CA264_12015 are separated by 436 nucleotides CA264_12000: CA264_12000 - MBL fold metallo-hydrolase, at 2,786,523 to 2,787,620 _12000 CA264_12005: CA264_12005 - hypothetical protein, at 2,787,677 to 2,787,865 _12005 CA264_12010: CA264_12010 - ATP-binding protein, at 2,788,107 to 2,788,841 _12010 CA264_12015: CA264_12015 - hypothetical protein, at 2,789,278 to 2,796,495 _12015 Position (kb) 2788 2789Strain fitness (log2 ratio) -2 -1 0 1 2at 2787.137 kb on - strand, within CA264_12000at 2787.154 kb on - strand, within CA264_12000at 2787.158 kb on + strand, within CA264_12000at 2787.159 kb on - strand, within CA264_12000at 2787.201 kb on + strand, within CA264_12000at 2787.327 kb on + strand, within CA264_12000at 2787.327 kb on + strand, within CA264_12000at 2787.330 kb on - strand, within CA264_12000at 2787.331 kb on + strand, within CA264_12000at 2787.332 kb on - strand, within CA264_12000at 2787.433 kb on + strand, within CA264_12000at 2787.475 kb on - strand, within CA264_12000at 2787.572 kb on - strandat 2787.612 kb on + strandat 2787.675 kb on - strandat 2787.740 kb on + strand, within CA264_12005at 2787.741 kb on - strand, within CA264_12005at 2787.780 kb on - strand, within CA264_12005at 2787.809 kb on - strand, within CA264_12005at 2787.839 kb on - strand, within CA264_12005at 2787.870 kb on + strandat 2787.870 kb on + strandat 2787.871 kb on - strandat 2787.910 kb on - strandat 2787.927 kb on - strandat 2787.927 kb on - strandat 2787.983 kb on + strandat 2788.081 kb on + strandat 2788.192 kb on - strand, within CA264_12010at 2788.240 kb on + strand, within CA264_12010at 2788.240 kb on + strand, within CA264_12010at 2788.240 kb on + strand, within CA264_12010at 2788.241 kb on - strand, within CA264_12010at 2788.241 kb on - strand, within CA264_12010at 2788.349 kb on + strand, within CA264_12010at 2788.350 kb on - strand, within CA264_12010at 2788.379 kb on - strand, within CA264_12010at 2788.379 kb on - strand, within CA264_12010at 2788.526 kb on + strand, within CA264_12010at 2788.715 kb on + strand, within CA264_12010at 2788.716 kb on - strand, within CA264_12010at 2788.842 kb on + strandat 2788.843 kb on - strandat 2788.885 kb on - strandat 2788.890 kb on - strandat 2788.918 kb on - strandat 2789.002 kb on - strandat 2789.007 kb on + strandat 2789.014 kb on - strandat 2789.031 kb on + strandat 2789.032 kb on - strandat 2789.079 kb on + strandat 2789.105 kb on - strandat 2789.177 kb on + strandat 2789.177 kb on + strandat 2789.248 kb on + strandat 2789.249 kb on - strandat 2789.263 kb on - strandat 2789.313 kb on + strandat 2789.314 kb on - strandat 2789.357 kb on + strandat 2789.358 kb on - strandat 2789.362 kb on - strandat 2789.372 kb on + strandat 2789.377 kb on - strandat 2789.377 kb on - strandat 2789.419 kb on + strandat 2789.419 kb on + strandat 2789.421 kb on + strandat 2789.422 kb on - strandat 2789.422 kb on - strandat 2789.534 kb on + strandat 2789.574 kb on + strandat 2789.592 kb on + strandat 2789.609 kb on + strandat 2789.610 kb on - strandat 2789.616 kb on + strandat 2789.617 kb on - strandat 2789.635 kb on - strandat 2789.680 kb on + strandat 2789.681 kb on - strandat 2789.681 kb on - strandat 2789.701 kb on + strandat 2789.706 kb on + strandat 2789.706 kb on + strandat 2789.712 kb on - strandat 2789.717 kb on - strandat 2789.757 kb on + strandat 2789.758 kb on - strandat 2789.763 kb on + strandat 2789.763 kb on + strandat 2789.763 kb on + strandat 2789.763 kb on + strandat 2789.764 kb on - strandat 2789.764 kb on - strandat 2789.789 kb on + strandat 2789.805 kb on + strandat 2789.823 kb on + strandat 2789.823 kb on + strandat 2789.824 kb on - strandat 2789.824 kb on - strandat 2789.824 kb on - strandat 2789.828 kb on + strandat 2789.828 kb on + strandat 2789.828 kb on + strandat 2789.831 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM
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2,787,137 - CA264_12000 0.56 +0.8
2,787,154 - CA264_12000 0.57 -0.1
2,787,158 + CA264_12000 0.58 +0.1
2,787,159 - CA264_12000 0.58 -1.9
2,787,201 + CA264_12000 0.62 -0.0
2,787,327 + CA264_12000 0.73 -1.7
2,787,327 + CA264_12000 0.73 +0.3
2,787,330 - CA264_12000 0.73 +0.3
2,787,331 + CA264_12000 0.74 +0.0
2,787,332 - CA264_12000 0.74 +0.6
2,787,433 + CA264_12000 0.83 +0.2
2,787,475 - CA264_12000 0.87 -1.9
2,787,572 - -0.1
2,787,612 + +0.5
2,787,675 - -0.5
2,787,740 + CA264_12005 0.33 -1.0
2,787,741 - CA264_12005 0.34 -0.0
2,787,780 - CA264_12005 0.54 +0.7
2,787,809 - CA264_12005 0.70 +0.2
2,787,839 - CA264_12005 0.86 +0.5
2,787,870 + -0.1
2,787,870 + -0.2
2,787,871 - +0.7
2,787,910 - -0.7
2,787,927 - -0.8
2,787,927 - +0.7
2,787,983 + -0.6
2,788,081 + -0.6
2,788,192 - CA264_12010 0.12 +1.1
2,788,240 + CA264_12010 0.18 +0.6
2,788,240 + CA264_12010 0.18 +0.4
2,788,240 + CA264_12010 0.18 -0.7
2,788,241 - CA264_12010 0.18 -0.0
2,788,241 - CA264_12010 0.18 +0.5
2,788,349 + CA264_12010 0.33 -1.1
2,788,350 - CA264_12010 0.33 -0.5
2,788,379 - CA264_12010 0.37 -0.5
2,788,379 - CA264_12010 0.37 +0.9
2,788,526 + CA264_12010 0.57 -0.5
2,788,715 + CA264_12010 0.83 +2.4
2,788,716 - CA264_12010 0.83 -0.9
2,788,842 + -0.2
2,788,843 - +0.8
2,788,885 - -0.1
2,788,890 - -0.3
2,788,918 - +0.3
2,789,002 - +0.4
2,789,007 + -0.4
2,789,014 - +0.0
2,789,031 + -1.1
2,789,032 - +0.5
2,789,079 + -0.4
2,789,105 - +0.8
2,789,177 + +0.4
2,789,177 + -0.1
2,789,248 + +1.3
2,789,249 - +0.5
2,789,263 - -0.8
2,789,313 + +0.5
2,789,314 - +1.3
2,789,357 + +0.6
2,789,358 - -0.7
2,789,362 - +0.8
2,789,372 + -0.7
2,789,377 - -0.1
2,789,377 - +0.1
2,789,419 + -0.8
2,789,419 + -0.2
2,789,421 + -0.9
2,789,422 - +1.4
2,789,422 - -0.1
2,789,534 + +0.1
2,789,574 + -0.3
2,789,592 + -0.1
2,789,609 + -0.6
2,789,610 - -0.2
2,789,616 + +0.5
2,789,617 - +0.2
2,789,635 - +1.0
2,789,680 + -0.3
2,789,681 - -0.6
2,789,681 - +0.8
2,789,701 + -0.2
2,789,706 + -0.6
2,789,706 + +0.9
2,789,712 - -0.4
2,789,717 - -0.7
2,789,757 + -0.7
2,789,758 - -0.3
2,789,763 + -0.2
2,789,763 + -1.2
2,789,763 + -1.9
2,789,763 + -0.1
2,789,764 - +0.9
2,789,764 - -0.3
2,789,789 + -0.0
2,789,805 + -0.8
2,789,823 + -0.7
2,789,823 + +0.6
2,789,824 - +0.4
2,789,824 - -0.0
2,789,824 - +0.3
2,789,828 + -0.4
2,789,828 + -0.1
2,789,828 + +1.2
2,789,831 - -0.5

Or see this region's nucleotide sequence