Experiment: m.b. Cobalt chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_11515 and CA264_11520 are separated by 261 nucleotides CA264_11520 and CA264_11525 overlap by 4 nucleotides CA264_11525 and CA264_11530 are separated by 449 nucleotides
CA264_11515: CA264_11515 - RNA polymerase sigma-70 factor, at 2,679,972 to 2,680,532
_11515
CA264_11520: CA264_11520 - hypothetical protein, at 2,680,794 to 2,681,192
_11520
CA264_11525: CA264_11525 - hypothetical protein, at 2,681,189 to 2,681,557
_11525
CA264_11530: CA264_11530 - recombinase XerD, at 2,682,007 to 2,683,305
_11530
Position (kb)
2681
2682 Strain fitness (log2 ratio)
-2
-1
0
1 at 2680.190 kb on + strand, within CA264_11515 at 2680.190 kb on + strand, within CA264_11515 at 2680.190 kb on + strand, within CA264_11515 at 2680.191 kb on - strand, within CA264_11515 at 2680.191 kb on - strand, within CA264_11515 at 2680.216 kb on + strand, within CA264_11515 at 2680.268 kb on + strand, within CA264_11515 at 2680.268 kb on + strand, within CA264_11515 at 2680.268 kb on + strand, within CA264_11515 at 2680.320 kb on - strand, within CA264_11515 at 2680.321 kb on + strand, within CA264_11515 at 2680.321 kb on + strand, within CA264_11515 at 2680.322 kb on - strand, within CA264_11515 at 2680.328 kb on - strand, within CA264_11515 at 2680.358 kb on + strand, within CA264_11515 at 2680.450 kb on - strand, within CA264_11515 at 2680.459 kb on + strand, within CA264_11515 at 2680.466 kb on + strand, within CA264_11515 at 2680.484 kb on - strand at 2680.575 kb on - strand at 2680.579 kb on - strand at 2680.581 kb on + strand at 2680.581 kb on + strand at 2680.591 kb on + strand at 2680.625 kb on + strand at 2680.659 kb on - strand at 2680.659 kb on - strand at 2680.715 kb on + strand at 2680.742 kb on + strand at 2680.743 kb on - strand at 2680.745 kb on + strand at 2680.745 kb on + strand at 2680.750 kb on + strand at 2680.751 kb on - strand at 2680.751 kb on - strand at 2680.897 kb on + strand, within CA264_11520 at 2680.899 kb on + strand, within CA264_11520 at 2680.900 kb on - strand, within CA264_11520 at 2681.005 kb on + strand, within CA264_11520 at 2681.005 kb on + strand, within CA264_11520 at 2681.005 kb on + strand, within CA264_11520 at 2681.005 kb on + strand, within CA264_11520 at 2681.005 kb on + strand, within CA264_11520 at 2681.006 kb on - strand, within CA264_11520 at 2681.006 kb on - strand, within CA264_11520 at 2681.046 kb on + strand, within CA264_11520 at 2681.074 kb on + strand, within CA264_11520 at 2681.096 kb on + strand, within CA264_11520 at 2681.096 kb on + strand, within CA264_11520 at 2681.097 kb on - strand, within CA264_11520 at 2681.229 kb on + strand, within CA264_11525 at 2681.245 kb on - strand, within CA264_11525 at 2681.247 kb on + strand, within CA264_11525 at 2681.248 kb on - strand, within CA264_11525 at 2681.424 kb on + strand, within CA264_11525 at 2681.425 kb on - strand, within CA264_11525 at 2681.425 kb on - strand, within CA264_11525 at 2681.459 kb on + strand, within CA264_11525 at 2681.459 kb on + strand, within CA264_11525 at 2681.460 kb on - strand, within CA264_11525 at 2681.460 kb on - strand, within CA264_11525 at 2681.464 kb on + strand, within CA264_11525 at 2681.465 kb on - strand, within CA264_11525 at 2681.556 kb on - strand at 2681.608 kb on + strand at 2681.630 kb on - strand at 2681.679 kb on - strand at 2681.767 kb on - strand at 2682.007 kb on - strand at 2682.068 kb on - strand at 2682.075 kb on - strand at 2682.087 kb on + strand at 2682.088 kb on - strand at 2682.091 kb on + strand at 2682.096 kb on - strand at 2682.124 kb on + strand at 2682.389 kb on - strand, within CA264_11530 at 2682.391 kb on - strand, within CA264_11530 at 2682.391 kb on - strand, within CA264_11530 at 2682.408 kb on + strand, within CA264_11530 at 2682.530 kb on + strand, within CA264_11530 at 2682.534 kb on + strand, within CA264_11530 at 2682.534 kb on + strand, within CA264_11530 at 2682.534 kb on + strand, within CA264_11530 at 2682.535 kb on - strand, within CA264_11530
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM remove 2,680,190 + CA264_11515 0.39 +0.7 2,680,190 + CA264_11515 0.39 +0.7 2,680,190 + CA264_11515 0.39 -0.4 2,680,191 - CA264_11515 0.39 -0.8 2,680,191 - CA264_11515 0.39 +0.0 2,680,216 + CA264_11515 0.43 -0.1 2,680,268 + CA264_11515 0.53 -0.0 2,680,268 + CA264_11515 0.53 -0.1 2,680,268 + CA264_11515 0.53 +1.0 2,680,320 - CA264_11515 0.62 -1.0 2,680,321 + CA264_11515 0.62 -0.3 2,680,321 + CA264_11515 0.62 -1.0 2,680,322 - CA264_11515 0.62 -0.4 2,680,328 - CA264_11515 0.63 +0.9 2,680,358 + CA264_11515 0.69 +0.8 2,680,450 - CA264_11515 0.85 +1.5 2,680,459 + CA264_11515 0.87 -0.3 2,680,466 + CA264_11515 0.88 +0.4 2,680,484 - -1.7 2,680,575 - -0.3 2,680,579 - -0.1 2,680,581 + -0.5 2,680,581 + -0.1 2,680,591 + -0.2 2,680,625 + +0.1 2,680,659 - -0.8 2,680,659 - +0.2 2,680,715 + -0.3 2,680,742 + -0.2 2,680,743 - +0.1 2,680,745 + +0.1 2,680,745 + -0.3 2,680,750 + +0.5 2,680,751 - -0.0 2,680,751 - -0.4 2,680,897 + CA264_11520 0.26 +0.5 2,680,899 + CA264_11520 0.26 -0.4 2,680,900 - CA264_11520 0.27 +0.0 2,681,005 + CA264_11520 0.53 -0.8 2,681,005 + CA264_11520 0.53 -0.4 2,681,005 + CA264_11520 0.53 -0.2 2,681,005 + CA264_11520 0.53 +0.9 2,681,005 + CA264_11520 0.53 -1.1 2,681,006 - CA264_11520 0.53 +0.3 2,681,006 - CA264_11520 0.53 +0.6 2,681,046 + CA264_11520 0.63 +0.1 2,681,074 + CA264_11520 0.70 -0.7 2,681,096 + CA264_11520 0.76 -1.3 2,681,096 + CA264_11520 0.76 -0.5 2,681,097 - CA264_11520 0.76 +1.0 2,681,229 + CA264_11525 0.11 +0.9 2,681,245 - CA264_11525 0.15 -0.1 2,681,247 + CA264_11525 0.16 -0.3 2,681,248 - CA264_11525 0.16 +0.1 2,681,424 + CA264_11525 0.64 +1.4 2,681,425 - CA264_11525 0.64 -0.1 2,681,425 - CA264_11525 0.64 +0.3 2,681,459 + CA264_11525 0.73 +0.7 2,681,459 + CA264_11525 0.73 +0.7 2,681,460 - CA264_11525 0.73 +1.2 2,681,460 - CA264_11525 0.73 -0.6 2,681,464 + CA264_11525 0.75 -1.8 2,681,465 - CA264_11525 0.75 -0.3 2,681,556 - +0.8 2,681,608 + +0.5 2,681,630 - -0.0 2,681,679 - +0.1 2,681,767 - +0.4 2,682,007 - +0.4 2,682,068 - -0.4 2,682,075 - -2.7 2,682,087 + -1.1 2,682,088 - -0.6 2,682,091 + -0.0 2,682,096 - +0.7 2,682,124 + -0.2 2,682,389 - CA264_11530 0.29 +0.4 2,682,391 - CA264_11530 0.30 -0.9 2,682,391 - CA264_11530 0.30 -0.1 2,682,408 + CA264_11530 0.31 -0.3 2,682,530 + CA264_11530 0.40 +0.0 2,682,534 + CA264_11530 0.41 -0.3 2,682,534 + CA264_11530 0.41 -0.0 2,682,534 + CA264_11530 0.41 -0.6 2,682,535 - CA264_11530 0.41 +0.8
Or see this region's nucleotide sequence