Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09010

Experiment: m.b. Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09000 and CA264_09005 are separated by 282 nucleotidesCA264_09005 and CA264_09010 are separated by 14 nucleotidesCA264_09010 and CA264_09015 are separated by 5 nucleotides CA264_09000: CA264_09000 - hypothetical protein, at 2,102,216 to 2,102,473 _09000 CA264_09005: CA264_09005 - hypothetical protein, at 2,102,756 to 2,103,265 _09005 CA264_09010: CA264_09010 - PAS domain-containing sensor histidine kinase, at 2,103,280 to 2,104,806 _09010 CA264_09015: CA264_09015 - acyl-CoA dehydrogenase, at 2,104,812 to 2,105,966 _09015 Position (kb) 2103 2104 2105Strain fitness (log2 ratio) -2 -1 0 1 2at 2102.281 kb on + strand, within CA264_09000at 2102.281 kb on + strand, within CA264_09000at 2102.285 kb on + strand, within CA264_09000at 2102.285 kb on + strand, within CA264_09000at 2102.286 kb on - strand, within CA264_09000at 2102.309 kb on - strand, within CA264_09000at 2102.338 kb on + strand, within CA264_09000at 2102.338 kb on + strand, within CA264_09000at 2102.339 kb on - strand, within CA264_09000at 2102.339 kb on - strand, within CA264_09000at 2102.415 kb on - strand, within CA264_09000at 2102.435 kb on + strand, within CA264_09000at 2102.441 kb on + strand, within CA264_09000at 2102.441 kb on + strand, within CA264_09000at 2102.442 kb on - strand, within CA264_09000at 2102.448 kb on - strandat 2102.448 kb on - strandat 2102.486 kb on + strandat 2102.486 kb on + strandat 2102.487 kb on - strandat 2102.487 kb on - strandat 2102.524 kb on + strandat 2102.525 kb on - strandat 2102.528 kb on + strandat 2102.528 kb on + strandat 2102.531 kb on + strandat 2102.531 kb on + strandat 2102.535 kb on + strandat 2102.536 kb on - strandat 2102.621 kb on + strandat 2102.621 kb on + strandat 2102.622 kb on - strandat 2102.642 kb on - strandat 2102.705 kb on + strandat 2102.706 kb on - strandat 2102.706 kb on - strandat 2102.712 kb on + strandat 2102.713 kb on - strandat 2102.726 kb on - strandat 2102.731 kb on + strandat 2102.732 kb on - strandat 2102.735 kb on + strandat 2102.735 kb on + strandat 2102.735 kb on + strandat 2102.736 kb on - strandat 2102.736 kb on - strandat 2102.738 kb on + strandat 2102.738 kb on + strandat 2102.739 kb on - strandat 2102.844 kb on + strand, within CA264_09005at 2102.868 kb on + strand, within CA264_09005at 2102.868 kb on + strand, within CA264_09005at 2102.869 kb on - strand, within CA264_09005at 2102.869 kb on - strand, within CA264_09005at 2102.921 kb on + strand, within CA264_09005at 2103.198 kb on - strand, within CA264_09005at 2103.198 kb on - strand, within CA264_09005at 2103.198 kb on - strand, within CA264_09005at 2103.281 kb on + strandat 2103.284 kb on - strandat 2103.294 kb on + strandat 2103.295 kb on - strandat 2103.331 kb on + strandat 2103.331 kb on + strandat 2103.332 kb on - strandat 2103.332 kb on - strandat 2103.377 kb on + strandat 2103.378 kb on - strandat 2103.400 kb on + strandat 2103.400 kb on + strandat 2103.401 kb on - strandat 2103.401 kb on - strandat 2103.565 kb on - strand, within CA264_09010at 2103.565 kb on - strand, within CA264_09010at 2103.565 kb on - strand, within CA264_09010at 2103.565 kb on - strand, within CA264_09010at 2103.576 kb on + strand, within CA264_09010at 2103.578 kb on + strand, within CA264_09010at 2103.579 kb on - strand, within CA264_09010at 2103.586 kb on - strand, within CA264_09010at 2103.688 kb on + strand, within CA264_09010at 2103.689 kb on - strand, within CA264_09010at 2103.786 kb on + strand, within CA264_09010at 2103.808 kb on + strand, within CA264_09010at 2103.808 kb on + strand, within CA264_09010at 2103.809 kb on - strand, within CA264_09010at 2103.809 kb on - strand, within CA264_09010at 2103.809 kb on - strand, within CA264_09010at 2103.810 kb on + strand, within CA264_09010at 2103.810 kb on + strand, within CA264_09010at 2103.811 kb on - strand, within CA264_09010at 2103.855 kb on + strand, within CA264_09010at 2103.924 kb on - strand, within CA264_09010at 2103.924 kb on - strand, within CA264_09010at 2103.934 kb on - strand, within CA264_09010at 2103.949 kb on + strand, within CA264_09010at 2103.958 kb on + strand, within CA264_09010at 2103.958 kb on + strand, within CA264_09010at 2103.959 kb on - strand, within CA264_09010at 2104.024 kb on - strand, within CA264_09010at 2104.032 kb on + strand, within CA264_09010at 2104.033 kb on - strand, within CA264_09010at 2104.033 kb on - strand, within CA264_09010at 2104.044 kb on + strand, within CA264_09010at 2104.281 kb on + strand, within CA264_09010at 2104.281 kb on + strand, within CA264_09010at 2104.282 kb on - strand, within CA264_09010at 2104.282 kb on - strand, within CA264_09010at 2104.282 kb on - strand, within CA264_09010at 2104.348 kb on - strand, within CA264_09010at 2104.348 kb on - strand, within CA264_09010at 2104.348 kb on - strand, within CA264_09010at 2104.350 kb on - strand, within CA264_09010at 2104.417 kb on - strand, within CA264_09010at 2104.431 kb on + strand, within CA264_09010at 2104.431 kb on + strand, within CA264_09010at 2104.471 kb on + strand, within CA264_09010at 2104.642 kb on + strand, within CA264_09010at 2104.643 kb on - strand, within CA264_09010at 2104.670 kb on + strandat 2104.790 kb on + strandat 2104.795 kb on + strandat 2104.797 kb on - strandat 2104.798 kb on - strandat 2104.813 kb on + strandat 2104.814 kb on - strandat 2104.814 kb on - strandat 2104.814 kb on - strandat 2104.826 kb on + strandat 2104.860 kb on - strandat 2104.862 kb on - strandat 2104.862 kb on - strandat 2104.862 kb on - strandat 2104.923 kb on + strandat 2104.997 kb on + strand, within CA264_09015at 2104.998 kb on - strand, within CA264_09015at 2105.056 kb on + strand, within CA264_09015at 2105.170 kb on + strand, within CA264_09015at 2105.170 kb on + strand, within CA264_09015at 2105.257 kb on + strand, within CA264_09015at 2105.258 kb on - strand, within CA264_09015at 2105.281 kb on + strand, within CA264_09015at 2105.281 kb on + strand, within CA264_09015at 2105.282 kb on - strand, within CA264_09015at 2105.282 kb on - strand, within CA264_09015at 2105.478 kb on - strand, within CA264_09015at 2105.488 kb on + strand, within CA264_09015at 2105.488 kb on + strand, within CA264_09015at 2105.584 kb on + strand, within CA264_09015at 2105.648 kb on + strand, within CA264_09015at 2105.648 kb on + strand, within CA264_09015at 2105.649 kb on - strand, within CA264_09015

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM
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2,102,281 + CA264_09000 0.25 +1.2
2,102,281 + CA264_09000 0.25 -0.4
2,102,285 + CA264_09000 0.27 -0.4
2,102,285 + CA264_09000 0.27 -0.4
2,102,286 - CA264_09000 0.27 -1.6
2,102,309 - CA264_09000 0.36 -0.2
2,102,338 + CA264_09000 0.47 -0.1
2,102,338 + CA264_09000 0.47 +1.8
2,102,339 - CA264_09000 0.48 -1.5
2,102,339 - CA264_09000 0.48 -0.6
2,102,415 - CA264_09000 0.77 -0.1
2,102,435 + CA264_09000 0.85 -0.5
2,102,441 + CA264_09000 0.87 -0.1
2,102,441 + CA264_09000 0.87 -0.3
2,102,442 - CA264_09000 0.88 -0.0
2,102,448 - -1.0
2,102,448 - +0.2
2,102,486 + +0.1
2,102,486 + -0.8
2,102,487 - -0.0
2,102,487 - -0.3
2,102,524 + +0.0
2,102,525 - +0.6
2,102,528 + -0.4
2,102,528 + +0.2
2,102,531 + -0.1
2,102,531 + +0.6
2,102,535 + -0.2
2,102,536 - +0.4
2,102,621 + +0.0
2,102,621 + -0.1
2,102,622 - +0.6
2,102,642 - -1.2
2,102,705 + -0.1
2,102,706 - -0.2
2,102,706 - -0.1
2,102,712 + -0.5
2,102,713 - -1.0
2,102,726 - -0.1
2,102,731 + -0.2
2,102,732 - -1.5
2,102,735 + +0.2
2,102,735 + +0.8
2,102,735 + +0.8
2,102,736 - +1.1
2,102,736 - -0.3
2,102,738 + -0.1
2,102,738 + -0.6
2,102,739 - -0.4
2,102,844 + CA264_09005 0.17 +1.7
2,102,868 + CA264_09005 0.22 +1.2
2,102,868 + CA264_09005 0.22 -1.0
2,102,869 - CA264_09005 0.22 +0.5
2,102,869 - CA264_09005 0.22 -0.9
2,102,921 + CA264_09005 0.32 -0.5
2,103,198 - CA264_09005 0.87 +0.6
2,103,198 - CA264_09005 0.87 +0.0
2,103,198 - CA264_09005 0.87 -0.8
2,103,281 + +0.5
2,103,284 - -0.5
2,103,294 + -0.0
2,103,295 - +2.4
2,103,331 + +0.4
2,103,331 + -0.0
2,103,332 - +0.3
2,103,332 - +0.2
2,103,377 + +0.8
2,103,378 - -0.2
2,103,400 + -0.4
2,103,400 + -0.1
2,103,401 - +0.1
2,103,401 - +0.2
2,103,565 - CA264_09010 0.19 -0.2
2,103,565 - CA264_09010 0.19 -0.5
2,103,565 - CA264_09010 0.19 -0.1
2,103,565 - CA264_09010 0.19 -0.0
2,103,576 + CA264_09010 0.19 +0.3
2,103,578 + CA264_09010 0.20 +0.6
2,103,579 - CA264_09010 0.20 +0.1
2,103,586 - CA264_09010 0.20 -1.0
2,103,688 + CA264_09010 0.27 -0.5
2,103,689 - CA264_09010 0.27 +0.4
2,103,786 + CA264_09010 0.33 -1.7
2,103,808 + CA264_09010 0.35 -0.3
2,103,808 + CA264_09010 0.35 -2.2
2,103,809 - CA264_09010 0.35 -0.2
2,103,809 - CA264_09010 0.35 -0.7
2,103,809 - CA264_09010 0.35 -0.6
2,103,810 + CA264_09010 0.35 -0.7
2,103,810 + CA264_09010 0.35 -1.0
2,103,811 - CA264_09010 0.35 -0.2
2,103,855 + CA264_09010 0.38 -0.4
2,103,924 - CA264_09010 0.42 -0.9
2,103,924 - CA264_09010 0.42 -0.7
2,103,934 - CA264_09010 0.43 +1.6
2,103,949 + CA264_09010 0.44 +1.4
2,103,958 + CA264_09010 0.44 -0.3
2,103,958 + CA264_09010 0.44 -0.5
2,103,959 - CA264_09010 0.44 -0.2
2,104,024 - CA264_09010 0.49 -0.1
2,104,032 + CA264_09010 0.49 +0.5
2,104,033 - CA264_09010 0.49 -0.4
2,104,033 - CA264_09010 0.49 -0.3
2,104,044 + CA264_09010 0.50 +0.1
2,104,281 + CA264_09010 0.66 -0.1
2,104,281 + CA264_09010 0.66 +0.1
2,104,282 - CA264_09010 0.66 -0.1
2,104,282 - CA264_09010 0.66 -1.8
2,104,282 - CA264_09010 0.66 -0.8
2,104,348 - CA264_09010 0.70 -0.0
2,104,348 - CA264_09010 0.70 -0.2
2,104,348 - CA264_09010 0.70 -0.2
2,104,350 - CA264_09010 0.70 -0.2
2,104,417 - CA264_09010 0.74 -0.7
2,104,431 + CA264_09010 0.75 -0.6
2,104,431 + CA264_09010 0.75 -0.2
2,104,471 + CA264_09010 0.78 -0.4
2,104,642 + CA264_09010 0.89 -0.5
2,104,643 - CA264_09010 0.89 -0.3
2,104,670 + +0.2
2,104,790 + +1.0
2,104,795 + +0.0
2,104,797 - +1.0
2,104,798 - +0.8
2,104,813 + +0.0
2,104,814 - -0.2
2,104,814 - +0.4
2,104,814 - -0.2
2,104,826 + -0.3
2,104,860 - -0.4
2,104,862 - +0.2
2,104,862 - -0.6
2,104,862 - +1.2
2,104,923 + -0.2
2,104,997 + CA264_09015 0.16 -0.4
2,104,998 - CA264_09015 0.16 +0.0
2,105,056 + CA264_09015 0.21 +0.3
2,105,170 + CA264_09015 0.31 +0.2
2,105,170 + CA264_09015 0.31 -0.2
2,105,257 + CA264_09015 0.39 +0.4
2,105,258 - CA264_09015 0.39 -0.4
2,105,281 + CA264_09015 0.41 -1.3
2,105,281 + CA264_09015 0.41 -0.5
2,105,282 - CA264_09015 0.41 -1.7
2,105,282 - CA264_09015 0.41 -0.7
2,105,478 - CA264_09015 0.58 +0.2
2,105,488 + CA264_09015 0.59 -0.2
2,105,488 + CA264_09015 0.59 +0.3
2,105,584 + CA264_09015 0.67 -0.3
2,105,648 + CA264_09015 0.72 -0.5
2,105,648 + CA264_09015 0.72 -0.7
2,105,649 - CA264_09015 0.72 -0.8

Or see this region's nucleotide sequence