Experiment: m.b. Cobalt chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09000 and CA264_09005 are separated by 282 nucleotides CA264_09005 and CA264_09010 are separated by 14 nucleotides CA264_09010 and CA264_09015 are separated by 5 nucleotides
CA264_09000: CA264_09000 - hypothetical protein, at 2,102,216 to 2,102,473
_09000
CA264_09005: CA264_09005 - hypothetical protein, at 2,102,756 to 2,103,265
_09005
CA264_09010: CA264_09010 - PAS domain-containing sensor histidine kinase, at 2,103,280 to 2,104,806
_09010
CA264_09015: CA264_09015 - acyl-CoA dehydrogenase, at 2,104,812 to 2,105,966
_09015
Position (kb)
2103
2104
2105 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2102.281 kb on + strand, within CA264_09000 at 2102.281 kb on + strand, within CA264_09000 at 2102.285 kb on + strand, within CA264_09000 at 2102.285 kb on + strand, within CA264_09000 at 2102.286 kb on - strand, within CA264_09000 at 2102.309 kb on - strand, within CA264_09000 at 2102.338 kb on + strand, within CA264_09000 at 2102.338 kb on + strand, within CA264_09000 at 2102.339 kb on - strand, within CA264_09000 at 2102.339 kb on - strand, within CA264_09000 at 2102.415 kb on - strand, within CA264_09000 at 2102.435 kb on + strand, within CA264_09000 at 2102.441 kb on + strand, within CA264_09000 at 2102.441 kb on + strand, within CA264_09000 at 2102.442 kb on - strand, within CA264_09000 at 2102.448 kb on - strand at 2102.448 kb on - strand at 2102.486 kb on + strand at 2102.486 kb on + strand at 2102.487 kb on - strand at 2102.487 kb on - strand at 2102.524 kb on + strand at 2102.525 kb on - strand at 2102.528 kb on + strand at 2102.528 kb on + strand at 2102.531 kb on + strand at 2102.531 kb on + strand at 2102.535 kb on + strand at 2102.536 kb on - strand at 2102.621 kb on + strand at 2102.621 kb on + strand at 2102.622 kb on - strand at 2102.642 kb on - strand at 2102.705 kb on + strand at 2102.706 kb on - strand at 2102.706 kb on - strand at 2102.712 kb on + strand at 2102.713 kb on - strand at 2102.726 kb on - strand at 2102.731 kb on + strand at 2102.732 kb on - strand at 2102.735 kb on + strand at 2102.735 kb on + strand at 2102.735 kb on + strand at 2102.736 kb on - strand at 2102.736 kb on - strand at 2102.738 kb on + strand at 2102.738 kb on + strand at 2102.739 kb on - strand at 2102.844 kb on + strand, within CA264_09005 at 2102.868 kb on + strand, within CA264_09005 at 2102.868 kb on + strand, within CA264_09005 at 2102.869 kb on - strand, within CA264_09005 at 2102.869 kb on - strand, within CA264_09005 at 2102.921 kb on + strand, within CA264_09005 at 2103.198 kb on - strand, within CA264_09005 at 2103.198 kb on - strand, within CA264_09005 at 2103.198 kb on - strand, within CA264_09005 at 2103.281 kb on + strand at 2103.284 kb on - strand at 2103.294 kb on + strand at 2103.295 kb on - strand at 2103.331 kb on + strand at 2103.331 kb on + strand at 2103.332 kb on - strand at 2103.332 kb on - strand at 2103.377 kb on + strand at 2103.378 kb on - strand at 2103.400 kb on + strand at 2103.400 kb on + strand at 2103.401 kb on - strand at 2103.401 kb on - strand at 2103.565 kb on - strand, within CA264_09010 at 2103.565 kb on - strand, within CA264_09010 at 2103.565 kb on - strand, within CA264_09010 at 2103.565 kb on - strand, within CA264_09010 at 2103.576 kb on + strand, within CA264_09010 at 2103.578 kb on + strand, within CA264_09010 at 2103.579 kb on - strand, within CA264_09010 at 2103.586 kb on - strand, within CA264_09010 at 2103.688 kb on + strand, within CA264_09010 at 2103.689 kb on - strand, within CA264_09010 at 2103.786 kb on + strand, within CA264_09010 at 2103.808 kb on + strand, within CA264_09010 at 2103.808 kb on + strand, within CA264_09010 at 2103.809 kb on - strand, within CA264_09010 at 2103.809 kb on - strand, within CA264_09010 at 2103.809 kb on - strand, within CA264_09010 at 2103.810 kb on + strand, within CA264_09010 at 2103.810 kb on + strand, within CA264_09010 at 2103.811 kb on - strand, within CA264_09010 at 2103.855 kb on + strand, within CA264_09010 at 2103.924 kb on - strand, within CA264_09010 at 2103.924 kb on - strand, within CA264_09010 at 2103.934 kb on - strand, within CA264_09010 at 2103.949 kb on + strand, within CA264_09010 at 2103.958 kb on + strand, within CA264_09010 at 2103.958 kb on + strand, within CA264_09010 at 2103.959 kb on - strand, within CA264_09010 at 2104.024 kb on - strand, within CA264_09010 at 2104.032 kb on + strand, within CA264_09010 at 2104.033 kb on - strand, within CA264_09010 at 2104.033 kb on - strand, within CA264_09010 at 2104.044 kb on + strand, within CA264_09010 at 2104.281 kb on + strand, within CA264_09010 at 2104.281 kb on + strand, within CA264_09010 at 2104.282 kb on - strand, within CA264_09010 at 2104.282 kb on - strand, within CA264_09010 at 2104.282 kb on - strand, within CA264_09010 at 2104.348 kb on - strand, within CA264_09010 at 2104.348 kb on - strand, within CA264_09010 at 2104.348 kb on - strand, within CA264_09010 at 2104.350 kb on - strand, within CA264_09010 at 2104.417 kb on - strand, within CA264_09010 at 2104.431 kb on + strand, within CA264_09010 at 2104.431 kb on + strand, within CA264_09010 at 2104.471 kb on + strand, within CA264_09010 at 2104.642 kb on + strand, within CA264_09010 at 2104.643 kb on - strand, within CA264_09010 at 2104.670 kb on + strand at 2104.790 kb on + strand at 2104.795 kb on + strand at 2104.797 kb on - strand at 2104.798 kb on - strand at 2104.813 kb on + strand at 2104.814 kb on - strand at 2104.814 kb on - strand at 2104.814 kb on - strand at 2104.826 kb on + strand at 2104.860 kb on - strand at 2104.862 kb on - strand at 2104.862 kb on - strand at 2104.862 kb on - strand at 2104.923 kb on + strand at 2104.997 kb on + strand, within CA264_09015 at 2104.998 kb on - strand, within CA264_09015 at 2105.056 kb on + strand, within CA264_09015 at 2105.170 kb on + strand, within CA264_09015 at 2105.170 kb on + strand, within CA264_09015 at 2105.257 kb on + strand, within CA264_09015 at 2105.258 kb on - strand, within CA264_09015 at 2105.281 kb on + strand, within CA264_09015 at 2105.281 kb on + strand, within CA264_09015 at 2105.282 kb on - strand, within CA264_09015 at 2105.282 kb on - strand, within CA264_09015 at 2105.478 kb on - strand, within CA264_09015 at 2105.488 kb on + strand, within CA264_09015 at 2105.488 kb on + strand, within CA264_09015 at 2105.584 kb on + strand, within CA264_09015 at 2105.648 kb on + strand, within CA264_09015 at 2105.648 kb on + strand, within CA264_09015 at 2105.649 kb on - strand, within CA264_09015
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM remove 2,102,281 + CA264_09000 0.25 +1.2 2,102,281 + CA264_09000 0.25 -0.4 2,102,285 + CA264_09000 0.27 -0.4 2,102,285 + CA264_09000 0.27 -0.4 2,102,286 - CA264_09000 0.27 -1.6 2,102,309 - CA264_09000 0.36 -0.2 2,102,338 + CA264_09000 0.47 -0.1 2,102,338 + CA264_09000 0.47 +1.8 2,102,339 - CA264_09000 0.48 -1.5 2,102,339 - CA264_09000 0.48 -0.6 2,102,415 - CA264_09000 0.77 -0.1 2,102,435 + CA264_09000 0.85 -0.5 2,102,441 + CA264_09000 0.87 -0.1 2,102,441 + CA264_09000 0.87 -0.3 2,102,442 - CA264_09000 0.88 -0.0 2,102,448 - -1.0 2,102,448 - +0.2 2,102,486 + +0.1 2,102,486 + -0.8 2,102,487 - -0.0 2,102,487 - -0.3 2,102,524 + +0.0 2,102,525 - +0.6 2,102,528 + -0.4 2,102,528 + +0.2 2,102,531 + -0.1 2,102,531 + +0.6 2,102,535 + -0.2 2,102,536 - +0.4 2,102,621 + +0.0 2,102,621 + -0.1 2,102,622 - +0.6 2,102,642 - -1.2 2,102,705 + -0.1 2,102,706 - -0.2 2,102,706 - -0.1 2,102,712 + -0.5 2,102,713 - -1.0 2,102,726 - -0.1 2,102,731 + -0.2 2,102,732 - -1.5 2,102,735 + +0.2 2,102,735 + +0.8 2,102,735 + +0.8 2,102,736 - +1.1 2,102,736 - -0.3 2,102,738 + -0.1 2,102,738 + -0.6 2,102,739 - -0.4 2,102,844 + CA264_09005 0.17 +1.7 2,102,868 + CA264_09005 0.22 +1.2 2,102,868 + CA264_09005 0.22 -1.0 2,102,869 - CA264_09005 0.22 +0.5 2,102,869 - CA264_09005 0.22 -0.9 2,102,921 + CA264_09005 0.32 -0.5 2,103,198 - CA264_09005 0.87 +0.6 2,103,198 - CA264_09005 0.87 +0.0 2,103,198 - CA264_09005 0.87 -0.8 2,103,281 + +0.5 2,103,284 - -0.5 2,103,294 + -0.0 2,103,295 - +2.4 2,103,331 + +0.4 2,103,331 + -0.0 2,103,332 - +0.3 2,103,332 - +0.2 2,103,377 + +0.8 2,103,378 - -0.2 2,103,400 + -0.4 2,103,400 + -0.1 2,103,401 - +0.1 2,103,401 - +0.2 2,103,565 - CA264_09010 0.19 -0.2 2,103,565 - CA264_09010 0.19 -0.5 2,103,565 - CA264_09010 0.19 -0.1 2,103,565 - CA264_09010 0.19 -0.0 2,103,576 + CA264_09010 0.19 +0.3 2,103,578 + CA264_09010 0.20 +0.6 2,103,579 - CA264_09010 0.20 +0.1 2,103,586 - CA264_09010 0.20 -1.0 2,103,688 + CA264_09010 0.27 -0.5 2,103,689 - CA264_09010 0.27 +0.4 2,103,786 + CA264_09010 0.33 -1.7 2,103,808 + CA264_09010 0.35 -0.3 2,103,808 + CA264_09010 0.35 -2.2 2,103,809 - CA264_09010 0.35 -0.2 2,103,809 - CA264_09010 0.35 -0.7 2,103,809 - CA264_09010 0.35 -0.6 2,103,810 + CA264_09010 0.35 -0.7 2,103,810 + CA264_09010 0.35 -1.0 2,103,811 - CA264_09010 0.35 -0.2 2,103,855 + CA264_09010 0.38 -0.4 2,103,924 - CA264_09010 0.42 -0.9 2,103,924 - CA264_09010 0.42 -0.7 2,103,934 - CA264_09010 0.43 +1.6 2,103,949 + CA264_09010 0.44 +1.4 2,103,958 + CA264_09010 0.44 -0.3 2,103,958 + CA264_09010 0.44 -0.5 2,103,959 - CA264_09010 0.44 -0.2 2,104,024 - CA264_09010 0.49 -0.1 2,104,032 + CA264_09010 0.49 +0.5 2,104,033 - CA264_09010 0.49 -0.4 2,104,033 - CA264_09010 0.49 -0.3 2,104,044 + CA264_09010 0.50 +0.1 2,104,281 + CA264_09010 0.66 -0.1 2,104,281 + CA264_09010 0.66 +0.1 2,104,282 - CA264_09010 0.66 -0.1 2,104,282 - CA264_09010 0.66 -1.8 2,104,282 - CA264_09010 0.66 -0.8 2,104,348 - CA264_09010 0.70 -0.0 2,104,348 - CA264_09010 0.70 -0.2 2,104,348 - CA264_09010 0.70 -0.2 2,104,350 - CA264_09010 0.70 -0.2 2,104,417 - CA264_09010 0.74 -0.7 2,104,431 + CA264_09010 0.75 -0.6 2,104,431 + CA264_09010 0.75 -0.2 2,104,471 + CA264_09010 0.78 -0.4 2,104,642 + CA264_09010 0.89 -0.5 2,104,643 - CA264_09010 0.89 -0.3 2,104,670 + +0.2 2,104,790 + +1.0 2,104,795 + +0.0 2,104,797 - +1.0 2,104,798 - +0.8 2,104,813 + +0.0 2,104,814 - -0.2 2,104,814 - +0.4 2,104,814 - -0.2 2,104,826 + -0.3 2,104,860 - -0.4 2,104,862 - +0.2 2,104,862 - -0.6 2,104,862 - +1.2 2,104,923 + -0.2 2,104,997 + CA264_09015 0.16 -0.4 2,104,998 - CA264_09015 0.16 +0.0 2,105,056 + CA264_09015 0.21 +0.3 2,105,170 + CA264_09015 0.31 +0.2 2,105,170 + CA264_09015 0.31 -0.2 2,105,257 + CA264_09015 0.39 +0.4 2,105,258 - CA264_09015 0.39 -0.4 2,105,281 + CA264_09015 0.41 -1.3 2,105,281 + CA264_09015 0.41 -0.5 2,105,282 - CA264_09015 0.41 -1.7 2,105,282 - CA264_09015 0.41 -0.7 2,105,478 - CA264_09015 0.58 +0.2 2,105,488 + CA264_09015 0.59 -0.2 2,105,488 + CA264_09015 0.59 +0.3 2,105,584 + CA264_09015 0.67 -0.3 2,105,648 + CA264_09015 0.72 -0.5 2,105,648 + CA264_09015 0.72 -0.7 2,105,649 - CA264_09015 0.72 -0.8
Or see this region's nucleotide sequence