Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05040

Experiment: m.b. Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05035 and CA264_05040 are separated by 76 nucleotidesCA264_05040 and CA264_05045 are separated by 74 nucleotidesCA264_05045 and CA264_05050 are separated by 30 nucleotides CA264_05035: CA264_05035 - histidinol-phosphate transaminase, at 1,167,673 to 1,168,728 _05035 CA264_05040: CA264_05040 - bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase, at 1,168,805 to 1,169,908 _05040 CA264_05045: CA264_05045 - hypothetical protein, at 1,169,983 to 1,170,393 _05045 CA264_05050: CA264_05050 - hypothetical protein, at 1,170,424 to 1,170,630 _05050 Position (kb) 1168 1169 1170Strain fitness (log2 ratio) -2 -1 0 1at 1167.815 kb on - strand, within CA264_05035at 1167.816 kb on + strand, within CA264_05035at 1167.848 kb on + strand, within CA264_05035at 1167.869 kb on + strand, within CA264_05035at 1167.923 kb on + strand, within CA264_05035at 1167.923 kb on + strand, within CA264_05035at 1167.923 kb on + strand, within CA264_05035at 1167.923 kb on + strand, within CA264_05035at 1167.924 kb on - strand, within CA264_05035at 1167.924 kb on - strand, within CA264_05035at 1167.997 kb on + strand, within CA264_05035at 1167.998 kb on - strand, within CA264_05035at 1167.998 kb on - strand, within CA264_05035at 1167.998 kb on - strand, within CA264_05035at 1168.099 kb on - strand, within CA264_05035at 1168.152 kb on - strand, within CA264_05035at 1168.152 kb on - strand, within CA264_05035at 1168.165 kb on - strand, within CA264_05035at 1168.167 kb on - strand, within CA264_05035at 1168.179 kb on + strand, within CA264_05035at 1168.179 kb on + strand, within CA264_05035at 1168.180 kb on - strand, within CA264_05035at 1168.180 kb on - strand, within CA264_05035at 1168.200 kb on - strand, within CA264_05035at 1168.217 kb on - strand, within CA264_05035at 1168.362 kb on - strand, within CA264_05035at 1168.365 kb on - strand, within CA264_05035at 1168.384 kb on + strand, within CA264_05035at 1168.528 kb on + strand, within CA264_05035at 1168.617 kb on + strand, within CA264_05035at 1168.657 kb on - strandat 1168.791 kb on - strandat 1168.962 kb on + strand, within CA264_05040at 1169.005 kb on + strand, within CA264_05040at 1169.059 kb on - strand, within CA264_05040at 1169.296 kb on + strand, within CA264_05040at 1169.296 kb on + strand, within CA264_05040at 1169.297 kb on - strand, within CA264_05040at 1169.300 kb on + strand, within CA264_05040at 1169.508 kb on + strand, within CA264_05040at 1169.509 kb on - strand, within CA264_05040at 1169.562 kb on + strand, within CA264_05040at 1169.673 kb on + strand, within CA264_05040at 1169.900 kb on - strandat 1169.905 kb on - strandat 1169.961 kb on + strandat 1169.963 kb on + strandat 1169.964 kb on - strandat 1170.037 kb on + strand, within CA264_05045at 1170.064 kb on - strand, within CA264_05045at 1170.183 kb on + strand, within CA264_05045at 1170.184 kb on - strand, within CA264_05045at 1170.184 kb on - strand, within CA264_05045at 1170.184 kb on - strand, within CA264_05045at 1170.248 kb on - strand, within CA264_05045at 1170.277 kb on + strand, within CA264_05045at 1170.277 kb on + strand, within CA264_05045at 1170.288 kb on - strand, within CA264_05045at 1170.310 kb on - strand, within CA264_05045at 1170.314 kb on + strand, within CA264_05045at 1170.337 kb on - strand, within CA264_05045at 1170.337 kb on - strand, within CA264_05045at 1170.337 kb on - strand, within CA264_05045at 1170.349 kb on + strand, within CA264_05045at 1170.357 kb on + strandat 1170.357 kb on + strandat 1170.357 kb on + strandat 1170.358 kb on - strandat 1170.358 kb on - strandat 1170.367 kb on + strandat 1170.368 kb on - strandat 1170.400 kb on + strandat 1170.400 kb on + strandat 1170.401 kb on - strandat 1170.401 kb on - strandat 1170.401 kb on - strandat 1170.401 kb on - strandat 1170.484 kb on + strand, within CA264_05050at 1170.569 kb on - strand, within CA264_05050at 1170.596 kb on + strand, within CA264_05050at 1170.597 kb on - strand, within CA264_05050at 1170.599 kb on - strand, within CA264_05050at 1170.700 kb on - strandat 1170.805 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM
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1,167,815 - CA264_05035 0.13 -0.5
1,167,816 + CA264_05035 0.14 -0.4
1,167,848 + CA264_05035 0.17 -0.4
1,167,869 + CA264_05035 0.19 +0.6
1,167,923 + CA264_05035 0.24 -0.7
1,167,923 + CA264_05035 0.24 -0.2
1,167,923 + CA264_05035 0.24 -0.0
1,167,923 + CA264_05035 0.24 +0.4
1,167,924 - CA264_05035 0.24 -1.9
1,167,924 - CA264_05035 0.24 +0.6
1,167,997 + CA264_05035 0.31 -0.8
1,167,998 - CA264_05035 0.31 -0.4
1,167,998 - CA264_05035 0.31 -0.2
1,167,998 - CA264_05035 0.31 -0.8
1,168,099 - CA264_05035 0.40 -2.3
1,168,152 - CA264_05035 0.45 +0.1
1,168,152 - CA264_05035 0.45 +0.1
1,168,165 - CA264_05035 0.47 +0.4
1,168,167 - CA264_05035 0.47 -0.9
1,168,179 + CA264_05035 0.48 +1.4
1,168,179 + CA264_05035 0.48 -1.6
1,168,180 - CA264_05035 0.48 +1.0
1,168,180 - CA264_05035 0.48 +0.8
1,168,200 - CA264_05035 0.50 -0.4
1,168,217 - CA264_05035 0.52 -0.4
1,168,362 - CA264_05035 0.65 -0.6
1,168,365 - CA264_05035 0.66 +0.2
1,168,384 + CA264_05035 0.67 -0.3
1,168,528 + CA264_05035 0.81 +0.6
1,168,617 + CA264_05035 0.89 +0.4
1,168,657 - -1.0
1,168,791 - +1.4
1,168,962 + CA264_05040 0.14 -1.3
1,169,005 + CA264_05040 0.18 -1.4
1,169,059 - CA264_05040 0.23 -1.6
1,169,296 + CA264_05040 0.44 -1.6
1,169,296 + CA264_05040 0.44 -1.3
1,169,297 - CA264_05040 0.45 -1.9
1,169,300 + CA264_05040 0.45 -1.5
1,169,508 + CA264_05040 0.64 -0.9
1,169,509 - CA264_05040 0.64 -0.3
1,169,562 + CA264_05040 0.69 +1.4
1,169,673 + CA264_05040 0.79 -1.8
1,169,900 - -0.6
1,169,905 - +0.1
1,169,961 + +0.1
1,169,963 + +0.8
1,169,964 - -0.0
1,170,037 + CA264_05045 0.13 +0.2
1,170,064 - CA264_05045 0.20 -0.1
1,170,183 + CA264_05045 0.49 +0.3
1,170,184 - CA264_05045 0.49 +0.1
1,170,184 - CA264_05045 0.49 +0.1
1,170,184 - CA264_05045 0.49 +0.3
1,170,248 - CA264_05045 0.64 -0.3
1,170,277 + CA264_05045 0.72 -0.6
1,170,277 + CA264_05045 0.72 -2.2
1,170,288 - CA264_05045 0.74 -0.2
1,170,310 - CA264_05045 0.80 -0.7
1,170,314 + CA264_05045 0.81 -0.6
1,170,337 - CA264_05045 0.86 +0.0
1,170,337 - CA264_05045 0.86 +0.7
1,170,337 - CA264_05045 0.86 +0.4
1,170,349 + CA264_05045 0.89 -0.8
1,170,357 + +0.3
1,170,357 + +0.0
1,170,357 + +0.0
1,170,358 - +0.7
1,170,358 - -0.8
1,170,367 + +0.5
1,170,368 - +0.5
1,170,400 + -0.1
1,170,400 + -0.8
1,170,401 - -0.2
1,170,401 - -1.0
1,170,401 - +0.3
1,170,401 - +0.2
1,170,484 + CA264_05050 0.29 -0.6
1,170,569 - CA264_05050 0.70 +0.2
1,170,596 + CA264_05050 0.83 -0.3
1,170,597 - CA264_05050 0.84 +0.1
1,170,599 - CA264_05050 0.85 -0.4
1,170,700 - -0.1
1,170,805 - -0.0

Or see this region's nucleotide sequence