Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03285

Experiment: m.b. Cobalt chloride 0.3 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_03275 and CA264_03280 are separated by 291 nucleotidesCA264_03280 and CA264_03285 are separated by 121 nucleotidesCA264_03285 and CA264_03290 are separated by 81 nucleotides CA264_03275: CA264_03275 - ribokinase, at 770,215 to 771,165 _03275 CA264_03280: CA264_03280 - hypothetical protein, at 771,457 to 771,789 _03280 CA264_03285: CA264_03285 - hypothetical protein, at 771,911 to 772,096 _03285 CA264_03290: CA264_03290 - hypothetical protein, at 772,178 to 773,185 _03290 Position (kb) 771 772 773Strain fitness (log2 ratio) -1 0 1 2at 771.012 kb on + strand, within CA264_03275at 771.118 kb on + strandat 771.119 kb on - strandat 771.119 kb on - strandat 771.148 kb on + strandat 771.149 kb on - strandat 771.167 kb on + strandat 771.167 kb on + strandat 771.167 kb on + strandat 771.168 kb on - strandat 771.168 kb on - strandat 771.168 kb on - strandat 771.173 kb on - strandat 771.180 kb on - strandat 771.180 kb on - strandat 771.331 kb on - strandat 771.344 kb on + strandat 771.344 kb on + strandat 771.345 kb on - strandat 771.346 kb on + strandat 771.346 kb on + strandat 771.347 kb on - strandat 771.350 kb on + strandat 771.352 kb on + strandat 771.352 kb on + strandat 771.352 kb on + strandat 771.353 kb on - strandat 771.356 kb on + strandat 771.356 kb on + strandat 771.357 kb on - strandat 771.358 kb on + strandat 771.362 kb on + strandat 771.363 kb on - strandat 771.365 kb on - strandat 771.386 kb on + strandat 771.421 kb on + strandat 771.422 kb on - strandat 771.444 kb on - strandat 771.451 kb on + strandat 771.525 kb on - strand, within CA264_03280at 771.555 kb on + strand, within CA264_03280at 771.558 kb on - strand, within CA264_03280at 771.587 kb on - strand, within CA264_03280at 771.597 kb on - strand, within CA264_03280at 771.636 kb on - strand, within CA264_03280at 771.636 kb on - strand, within CA264_03280at 771.639 kb on - strand, within CA264_03280at 771.639 kb on - strand, within CA264_03280at 771.681 kb on - strand, within CA264_03280at 771.693 kb on - strand, within CA264_03280at 771.693 kb on - strand, within CA264_03280at 771.693 kb on - strand, within CA264_03280at 771.706 kb on + strand, within CA264_03280at 771.707 kb on - strand, within CA264_03280at 771.707 kb on - strand, within CA264_03280at 771.707 kb on - strand, within CA264_03280at 771.749 kb on + strand, within CA264_03280at 771.750 kb on - strand, within CA264_03280at 771.750 kb on - strand, within CA264_03280at 771.750 kb on - strandat 771.781 kb on + strandat 771.905 kb on + strandat 771.912 kb on + strandat 771.912 kb on + strandat 771.913 kb on - strandat 771.913 kb on - strandat 771.913 kb on - strandat 771.939 kb on + strand, within CA264_03285at 772.065 kb on + strand, within CA264_03285at 772.066 kb on - strand, within CA264_03285at 772.132 kb on - strandat 772.133 kb on + strandat 772.134 kb on - strandat 772.137 kb on + strandat 772.137 kb on + strandat 772.138 kb on - strandat 772.144 kb on + strandat 772.250 kb on - strandat 772.297 kb on - strand, within CA264_03290at 772.421 kb on - strand, within CA264_03290at 772.421 kb on - strand, within CA264_03290at 772.431 kb on + strand, within CA264_03290at 772.538 kb on + strand, within CA264_03290at 772.539 kb on - strand, within CA264_03290at 772.553 kb on - strand, within CA264_03290at 772.601 kb on + strand, within CA264_03290at 772.602 kb on - strand, within CA264_03290at 772.602 kb on - strand, within CA264_03290at 772.602 kb on - strand, within CA264_03290at 772.603 kb on + strand, within CA264_03290at 772.665 kb on + strand, within CA264_03290at 772.666 kb on - strand, within CA264_03290at 772.848 kb on + strand, within CA264_03290at 772.849 kb on - strand, within CA264_03290at 772.857 kb on + strand, within CA264_03290at 772.858 kb on - strand, within CA264_03290at 772.896 kb on + strand, within CA264_03290at 772.926 kb on + strand, within CA264_03290at 772.932 kb on + strand, within CA264_03290at 772.932 kb on + strand, within CA264_03290at 773.082 kb on + strand, within CA264_03290

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM
remove
771,012 + CA264_03275 0.84 -1.0
771,118 + +0.6
771,119 - -0.1
771,119 - +0.2
771,148 + -0.7
771,149 - -0.3
771,167 + +0.9
771,167 + -0.4
771,167 + -1.0
771,168 - -0.1
771,168 - -0.3
771,168 - +0.7
771,173 - +0.2
771,180 - -0.1
771,180 - +0.5
771,331 - +0.3
771,344 + -0.7
771,344 + -0.8
771,345 - +0.5
771,346 + +0.2
771,346 + -1.1
771,347 - -0.4
771,350 + +0.5
771,352 + +0.1
771,352 + -0.2
771,352 + +1.0
771,353 - -1.6
771,356 + -1.0
771,356 + +0.3
771,357 - -0.1
771,358 + +0.9
771,362 + +0.3
771,363 - -0.3
771,365 - +0.6
771,386 + -0.5
771,421 + +0.8
771,422 - +1.1
771,444 - +0.2
771,451 + -0.3
771,525 - CA264_03280 0.20 -0.2
771,555 + CA264_03280 0.29 +2.1
771,558 - CA264_03280 0.30 +0.7
771,587 - CA264_03280 0.39 +0.5
771,597 - CA264_03280 0.42 -0.4
771,636 - CA264_03280 0.54 -0.2
771,636 - CA264_03280 0.54 -1.5
771,639 - CA264_03280 0.55 -0.3
771,639 - CA264_03280 0.55 -0.3
771,681 - CA264_03280 0.67 -0.7
771,693 - CA264_03280 0.71 +0.2
771,693 - CA264_03280 0.71 +0.1
771,693 - CA264_03280 0.71 -1.0
771,706 + CA264_03280 0.75 +0.0
771,707 - CA264_03280 0.75 -0.8
771,707 - CA264_03280 0.75 -0.4
771,707 - CA264_03280 0.75 -1.1
771,749 + CA264_03280 0.88 -0.4
771,750 - CA264_03280 0.88 -0.1
771,750 - CA264_03280 0.88 -0.2
771,750 - -0.3
771,781 + +0.0
771,905 + -0.1
771,912 + +0.1
771,912 + +0.9
771,913 - +0.4
771,913 - +0.2
771,913 - +2.5
771,939 + CA264_03285 0.15 +0.2
772,065 + CA264_03285 0.83 -0.5
772,066 - CA264_03285 0.83 -0.2
772,132 - -1.5
772,133 + -0.4
772,134 - -0.3
772,137 + -0.3
772,137 + -0.8
772,138 - -0.5
772,144 + +0.6
772,250 - +0.4
772,297 - CA264_03290 0.12 -0.0
772,421 - CA264_03290 0.24 +1.7
772,421 - CA264_03290 0.24 -0.3
772,431 + CA264_03290 0.25 +0.1
772,538 + CA264_03290 0.36 +0.3
772,539 - CA264_03290 0.36 +1.1
772,553 - CA264_03290 0.37 +1.3
772,601 + CA264_03290 0.42 -0.3
772,602 - CA264_03290 0.42 +0.5
772,602 - CA264_03290 0.42 -0.3
772,602 - CA264_03290 0.42 -0.0
772,603 + CA264_03290 0.42 -0.1
772,665 + CA264_03290 0.48 +0.3
772,666 - CA264_03290 0.48 -0.2
772,848 + CA264_03290 0.66 -0.7
772,849 - CA264_03290 0.67 -0.1
772,857 + CA264_03290 0.67 +0.5
772,858 - CA264_03290 0.67 -0.5
772,896 + CA264_03290 0.71 -0.4
772,926 + CA264_03290 0.74 +1.0
772,932 + CA264_03290 0.75 +0.1
772,932 + CA264_03290 0.75 +0.5
773,082 + CA264_03290 0.90 -0.3

Or see this region's nucleotide sequence