Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01260

Experiment: m.b. Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01255 and CA264_01260 are separated by 227 nucleotidesCA264_01260 and CA264_01265 are separated by 99 nucleotidesCA264_01265 and CA264_01270 are separated by 12 nucleotidesCA264_01270 and CA264_01275 overlap by 1 nucleotides CA264_01255: CA264_01255 - thioredoxin domain-containing protein, at 300,133 to 302,196 _01255 CA264_01260: CA264_01260 - hypothetical protein, at 302,424 to 303,404 _01260 CA264_01265: CA264_01265 - 50S ribosomal protein L9, at 303,504 to 303,947 _01265 CA264_01270: CA264_01270 - 30S ribosomal protein S18, at 303,960 to 304,211 _01270 CA264_01275: CA264_01275 - 30S ribosomal protein S6, at 304,211 to 304,579 _01275 Position (kb) 302 303 304Strain fitness (log2 ratio) -2 -1 0 1at 301.460 kb on + strand, within CA264_01255at 301.461 kb on - strand, within CA264_01255at 301.461 kb on - strand, within CA264_01255at 301.492 kb on - strand, within CA264_01255at 301.538 kb on + strand, within CA264_01255at 301.557 kb on - strand, within CA264_01255at 301.671 kb on + strand, within CA264_01255at 301.689 kb on - strand, within CA264_01255at 301.692 kb on + strand, within CA264_01255at 301.692 kb on + strand, within CA264_01255at 301.693 kb on - strand, within CA264_01255at 301.693 kb on - strand, within CA264_01255at 301.696 kb on + strand, within CA264_01255at 301.697 kb on - strand, within CA264_01255at 301.766 kb on + strand, within CA264_01255at 301.817 kb on + strand, within CA264_01255at 301.817 kb on + strand, within CA264_01255at 301.910 kb on + strand, within CA264_01255at 301.910 kb on + strand, within CA264_01255at 301.911 kb on - strand, within CA264_01255at 301.911 kb on - strand, within CA264_01255at 302.130 kb on - strandat 302.164 kb on + strandat 302.164 kb on + strandat 302.165 kb on - strandat 302.165 kb on - strandat 302.202 kb on + strandat 302.202 kb on + strandat 302.203 kb on - strandat 302.203 kb on - strandat 302.231 kb on + strandat 302.325 kb on + strandat 302.325 kb on + strandat 302.325 kb on + strandat 302.326 kb on - strandat 302.332 kb on - strandat 302.369 kb on + strandat 302.407 kb on + strandat 302.545 kb on + strand, within CA264_01260at 302.601 kb on - strand, within CA264_01260at 302.601 kb on - strand, within CA264_01260at 302.623 kb on + strand, within CA264_01260at 302.634 kb on + strand, within CA264_01260at 302.652 kb on - strand, within CA264_01260at 302.652 kb on - strand, within CA264_01260at 302.653 kb on + strand, within CA264_01260at 302.654 kb on - strand, within CA264_01260at 302.654 kb on - strand, within CA264_01260at 302.654 kb on - strand, within CA264_01260at 302.654 kb on - strand, within CA264_01260at 302.734 kb on + strand, within CA264_01260at 302.734 kb on + strand, within CA264_01260at 302.734 kb on + strand, within CA264_01260at 302.746 kb on + strand, within CA264_01260at 302.902 kb on + strand, within CA264_01260at 302.902 kb on + strand, within CA264_01260at 302.902 kb on + strand, within CA264_01260at 302.903 kb on - strand, within CA264_01260at 302.903 kb on - strand, within CA264_01260at 303.039 kb on + strand, within CA264_01260at 303.040 kb on - strand, within CA264_01260at 303.040 kb on - strand, within CA264_01260at 303.041 kb on + strand, within CA264_01260at 303.041 kb on + strand, within CA264_01260at 303.067 kb on + strand, within CA264_01260at 303.106 kb on - strand, within CA264_01260at 303.106 kb on - strand, within CA264_01260at 303.151 kb on + strand, within CA264_01260at 303.151 kb on + strand, within CA264_01260at 303.191 kb on + strand, within CA264_01260at 303.200 kb on - strand, within CA264_01260at 303.200 kb on - strand, within CA264_01260at 303.382 kb on - strandat 303.428 kb on + strandat 303.438 kb on + strandat 303.480 kb on - strandat 303.609 kb on - strand, within CA264_01265at 303.622 kb on - strand, within CA264_01265

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM
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301,460 + CA264_01255 0.64 -0.3
301,461 - CA264_01255 0.64 -0.5
301,461 - CA264_01255 0.64 -2.0
301,492 - CA264_01255 0.66 +0.1
301,538 + CA264_01255 0.68 -0.8
301,557 - CA264_01255 0.69 +0.8
301,671 + CA264_01255 0.75 -0.8
301,689 - CA264_01255 0.75 -0.7
301,692 + CA264_01255 0.76 +0.4
301,692 + CA264_01255 0.76 -0.9
301,693 - CA264_01255 0.76 -0.4
301,693 - CA264_01255 0.76 -0.2
301,696 + CA264_01255 0.76 -0.2
301,697 - CA264_01255 0.76 +0.0
301,766 + CA264_01255 0.79 -1.5
301,817 + CA264_01255 0.82 +0.4
301,817 + CA264_01255 0.82 -1.4
301,910 + CA264_01255 0.86 -0.5
301,910 + CA264_01255 0.86 -0.1
301,911 - CA264_01255 0.86 +0.3
301,911 - CA264_01255 0.86 -0.2
302,130 - -0.6
302,164 + -1.1
302,164 + +0.3
302,165 - -0.0
302,165 - -1.0
302,202 + -0.4
302,202 + -0.5
302,203 - +0.7
302,203 - +1.1
302,231 + -0.5
302,325 + -1.0
302,325 + -0.3
302,325 + -0.3
302,326 - +0.1
302,332 - -0.2
302,369 + +0.1
302,407 + -0.9
302,545 + CA264_01260 0.12 +1.4
302,601 - CA264_01260 0.18 -0.2
302,601 - CA264_01260 0.18 +0.5
302,623 + CA264_01260 0.20 -0.6
302,634 + CA264_01260 0.21 +0.1
302,652 - CA264_01260 0.23 -1.2
302,652 - CA264_01260 0.23 -0.7
302,653 + CA264_01260 0.23 -1.1
302,654 - CA264_01260 0.23 -0.8
302,654 - CA264_01260 0.23 -0.2
302,654 - CA264_01260 0.23 +0.2
302,654 - CA264_01260 0.23 +0.3
302,734 + CA264_01260 0.32 -0.8
302,734 + CA264_01260 0.32 +1.0
302,734 + CA264_01260 0.32 -0.9
302,746 + CA264_01260 0.33 -0.8
302,902 + CA264_01260 0.49 +0.6
302,902 + CA264_01260 0.49 +0.0
302,902 + CA264_01260 0.49 -0.9
302,903 - CA264_01260 0.49 +0.7
302,903 - CA264_01260 0.49 +0.4
303,039 + CA264_01260 0.63 -1.2
303,040 - CA264_01260 0.63 -0.1
303,040 - CA264_01260 0.63 -0.7
303,041 + CA264_01260 0.63 -1.5
303,041 + CA264_01260 0.63 -1.0
303,067 + CA264_01260 0.66 +0.1
303,106 - CA264_01260 0.70 -0.3
303,106 - CA264_01260 0.70 -0.3
303,151 + CA264_01260 0.74 +0.8
303,151 + CA264_01260 0.74 -1.1
303,191 + CA264_01260 0.78 -1.0
303,200 - CA264_01260 0.79 +0.3
303,200 - CA264_01260 0.79 -0.7
303,382 - +0.3
303,428 + -0.0
303,438 + +1.1
303,480 - -0.5
303,609 - CA264_01265 0.24 -1.6
303,622 - CA264_01265 0.27 -2.2

Or see this region's nucleotide sequence