Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS23100

Experiment: Itaconic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS23095 and ABIE40_RS23100 are separated by 145 nucleotidesABIE40_RS23100 and ABIE40_RS23105 are separated by 181 nucleotidesABIE40_RS23105 and ABIE40_RS23110 are separated by 41 nucleotides ABIE40_RS23095: ABIE40_RS23095 - LysR substrate-binding domain-containing protein, at 766,514 to 767,410 _RS23095 ABIE40_RS23100: ABIE40_RS23100 - hypothetical protein, at 767,556 to 767,753 _RS23100 ABIE40_RS23105: ABIE40_RS23105 - MetQ/NlpA family ABC transporter substrate-binding protein, at 767,935 to 768,711 _RS23105 ABIE40_RS23110: ABIE40_RS23110 - methionine ABC transporter permease, at 768,753 to 769,421 _RS23110 Position (kb) 767 768Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 766.715 kb on + strand, within ABIE40_RS23095at 766.715 kb on + strand, within ABIE40_RS23095at 766.715 kb on + strand, within ABIE40_RS23095at 766.715 kb on + strand, within ABIE40_RS23095at 766.715 kb on + strand, within ABIE40_RS23095at 766.715 kb on + strand, within ABIE40_RS23095at 766.716 kb on - strand, within ABIE40_RS23095at 767.111 kb on + strand, within ABIE40_RS23095at 767.111 kb on + strand, within ABIE40_RS23095at 767.122 kb on + strand, within ABIE40_RS23095at 767.122 kb on + strand, within ABIE40_RS23095at 767.122 kb on + strand, within ABIE40_RS23095at 767.122 kb on + strand, within ABIE40_RS23095at 767.123 kb on - strand, within ABIE40_RS23095at 767.123 kb on - strand, within ABIE40_RS23095at 767.123 kb on - strand, within ABIE40_RS23095at 767.123 kb on - strand, within ABIE40_RS23095at 767.123 kb on - strand, within ABIE40_RS23095at 767.253 kb on + strand, within ABIE40_RS23095at 767.253 kb on + strand, within ABIE40_RS23095at 767.253 kb on + strand, within ABIE40_RS23095at 767.253 kb on + strand, within ABIE40_RS23095at 767.253 kb on + strand, within ABIE40_RS23095at 767.331 kb on - strandat 767.331 kb on - strandat 767.331 kb on - strandat 767.431 kb on + strandat 767.432 kb on - strandat 767.432 kb on - strandat 767.432 kb on - strandat 767.452 kb on + strandat 767.452 kb on + strandat 767.452 kb on + strandat 767.469 kb on + strandat 767.469 kb on + strandat 767.469 kb on + strandat 767.473 kb on + strandat 767.473 kb on + strandat 767.473 kb on + strandat 767.473 kb on + strandat 767.473 kb on + strandat 767.473 kb on + strandat 767.473 kb on + strandat 767.473 kb on + strandat 767.473 kb on + strandat 767.473 kb on + strandat 767.474 kb on - strandat 767.474 kb on - strandat 767.474 kb on - strandat 767.474 kb on - strandat 767.474 kb on - strandat 767.474 kb on - strandat 767.474 kb on - strandat 767.576 kb on + strand, within ABIE40_RS23100at 767.576 kb on + strand, within ABIE40_RS23100at 767.679 kb on + strand, within ABIE40_RS23100at 767.679 kb on + strand, within ABIE40_RS23100at 767.679 kb on + strand, within ABIE40_RS23100at 767.680 kb on - strand, within ABIE40_RS23100at 767.680 kb on - strand, within ABIE40_RS23100at 767.680 kb on - strand, within ABIE40_RS23100at 767.680 kb on - strand, within ABIE40_RS23100at 767.680 kb on - strand, within ABIE40_RS23100at 767.680 kb on - strand, within ABIE40_RS23100at 767.680 kb on - strand, within ABIE40_RS23100at 767.680 kb on - strand, within ABIE40_RS23100at 767.834 kb on + strandat 767.835 kb on - strandat 767.835 kb on - strandat 767.936 kb on + strandat 768.003 kb on - strandat 768.071 kb on + strand, within ABIE40_RS23105at 768.072 kb on - strand, within ABIE40_RS23105at 768.137 kb on + strand, within ABIE40_RS23105at 768.137 kb on + strand, within ABIE40_RS23105at 768.138 kb on - strand, within ABIE40_RS23105at 768.395 kb on + strand, within ABIE40_RS23105at 768.473 kb on + strand, within ABIE40_RS23105at 768.473 kb on + strand, within ABIE40_RS23105at 768.473 kb on + strand, within ABIE40_RS23105at 768.539 kb on + strand, within ABIE40_RS23105at 768.726 kb on + strandat 768.727 kb on - strandat 768.727 kb on - strandat 768.727 kb on - strandat 768.727 kb on - strandat 768.732 kb on + strandat 768.732 kb on + strandat 768.733 kb on - strandat 768.733 kb on - strandat 768.735 kb on - strandat 768.735 kb on - strandat 768.735 kb on - strandat 768.735 kb on - strandat 768.739 kb on + strandat 768.739 kb on + strandat 768.739 kb on + strandat 768.740 kb on - strandat 768.740 kb on - strandat 768.740 kb on - strandat 768.748 kb on + strandat 768.749 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Itaconic Acid (C)
remove
766,715 + ABIE40_RS23095 0.22 +0.7
766,715 + ABIE40_RS23095 0.22 -2.7
766,715 + ABIE40_RS23095 0.22 -0.7
766,715 + ABIE40_RS23095 0.22 +1.1
766,715 + ABIE40_RS23095 0.22 +0.7
766,715 + ABIE40_RS23095 0.22 +0.5
766,716 - ABIE40_RS23095 0.23 +0.1
767,111 + ABIE40_RS23095 0.67 -0.8
767,111 + ABIE40_RS23095 0.67 -1.5
767,122 + ABIE40_RS23095 0.68 +0.8
767,122 + ABIE40_RS23095 0.68 -1.2
767,122 + ABIE40_RS23095 0.68 -1.4
767,122 + ABIE40_RS23095 0.68 +0.5
767,123 - ABIE40_RS23095 0.68 -0.5
767,123 - ABIE40_RS23095 0.68 +0.3
767,123 - ABIE40_RS23095 0.68 -0.4
767,123 - ABIE40_RS23095 0.68 -0.4
767,123 - ABIE40_RS23095 0.68 -2.5
767,253 + ABIE40_RS23095 0.82 -0.3
767,253 + ABIE40_RS23095 0.82 -0.8
767,253 + ABIE40_RS23095 0.82 +0.8
767,253 + ABIE40_RS23095 0.82 +0.8
767,253 + ABIE40_RS23095 0.82 +0.4
767,331 - -0.5
767,331 - +1.0
767,331 - +1.0
767,431 + -2.5
767,432 - -2.3
767,432 - +0.6
767,432 - +0.3
767,452 + -0.3
767,452 + -1.8
767,452 + +0.0
767,469 + +0.2
767,469 + -0.0
767,469 + -2.4
767,473 + -0.1
767,473 + +0.7
767,473 + +0.3
767,473 + +0.3
767,473 + +1.5
767,473 + -0.8
767,473 + -0.3
767,473 + -1.0
767,473 + -0.2
767,473 + +0.0
767,474 - +2.9
767,474 - +0.4
767,474 - +0.5
767,474 - -0.2
767,474 - +0.5
767,474 - -0.6
767,474 - -1.5
767,576 + ABIE40_RS23100 0.10 -0.1
767,576 + ABIE40_RS23100 0.10 -0.1
767,679 + ABIE40_RS23100 0.62 +0.5
767,679 + ABIE40_RS23100 0.62 -1.2
767,679 + ABIE40_RS23100 0.62 -1.5
767,680 - ABIE40_RS23100 0.63 -0.3
767,680 - ABIE40_RS23100 0.63 -3.7
767,680 - ABIE40_RS23100 0.63 -1.8
767,680 - ABIE40_RS23100 0.63 -1.1
767,680 - ABIE40_RS23100 0.63 -1.4
767,680 - ABIE40_RS23100 0.63 +0.7
767,680 - ABIE40_RS23100 0.63 -0.9
767,680 - ABIE40_RS23100 0.63 -0.2
767,834 + -0.0
767,835 - +0.9
767,835 - -0.4
767,936 + +0.5
768,003 - +1.0
768,071 + ABIE40_RS23105 0.18 -2.5
768,072 - ABIE40_RS23105 0.18 +0.6
768,137 + ABIE40_RS23105 0.26 -0.2
768,137 + ABIE40_RS23105 0.26 +0.8
768,138 - ABIE40_RS23105 0.26 +0.4
768,395 + ABIE40_RS23105 0.59 +0.2
768,473 + ABIE40_RS23105 0.69 +0.8
768,473 + ABIE40_RS23105 0.69 -1.7
768,473 + ABIE40_RS23105 0.69 -2.2
768,539 + ABIE40_RS23105 0.78 -1.4
768,726 + -1.0
768,727 - -0.4
768,727 - -0.5
768,727 - -2.5
768,727 - -0.3
768,732 + -2.4
768,732 + +0.3
768,733 - +0.7
768,733 - -3.2
768,735 - -0.6
768,735 - -2.1
768,735 - -2.5
768,735 - -1.3
768,739 + +1.3
768,739 + +0.9
768,739 + -1.9
768,740 - -0.5
768,740 - -0.0
768,740 - -2.1
768,748 + +1.3
768,749 - -1.4

Or see this region's nucleotide sequence