Experiment: Glycolic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28275 and ABID97_RS28280 are separated by 130 nucleotides ABID97_RS28280 and ABID97_RS28285 are separated by 195 nucleotides ABID97_RS28285 and ABID97_RS28290 are separated by 104 nucleotides ABID97_RS28290 and ABID97_RS28295 are separated by 150 nucleotides
ABID97_RS28275: ABID97_RS28275 - tripartite tricarboxylate transporter substrate binding protein, at 575,081 to 576,055
_RS28275
ABID97_RS28280: ABID97_RS28280 - hypothetical protein, at 576,186 to 576,740
_RS28280
ABID97_RS28285: ABID97_RS28285 - hypothetical protein, at 576,936 to 577,292
_RS28285
ABID97_RS28290: ABID97_RS28290 - hypothetical protein, at 577,397 to 577,696
_RS28290
ABID97_RS28295: ABID97_RS28295 - tRNA-uridine aminocarboxypropyltransferase, at 577,847 to 578,606
_RS28295
Position (kb) 576
577
578 Strain fitness (log2 ratio) -1
0
1 at 576.379 kb on - strand, within ABID97_RS28280 at 576.412 kb on + strand, within ABID97_RS28280 at 576.413 kb on - strand, within ABID97_RS28280 at 577.000 kb on + strand, within ABID97_RS28285 at 577.001 kb on - strand, within ABID97_RS28285 at 577.128 kb on + strand, within ABID97_RS28285 at 577.220 kb on + strand, within ABID97_RS28285 at 577.410 kb on - strand at 577.520 kb on - strand, within ABID97_RS28290 at 578.187 kb on + strand, within ABID97_RS28295 at 578.188 kb on - strand, within ABID97_RS28295
Per-strain Table
Position Strand Gene LocusTag Fraction Glycolic Acid (C) remove 576,379 - ABID97_RS28280 0.35 -0.2 576,412 + ABID97_RS28280 0.41 -0.8 576,413 - ABID97_RS28280 0.41 -1.2 577,000 + ABID97_RS28285 0.18 -0.0 577,001 - ABID97_RS28285 0.18 +0.2 577,128 + ABID97_RS28285 0.54 -0.4 577,220 + ABID97_RS28285 0.80 -1.3 577,410 - +0.0 577,520 - ABID97_RS28290 0.41 -0.1 578,187 + ABID97_RS28295 0.45 +0.1 578,188 - ABID97_RS28295 0.45 +0.1
Or see this region's nucleotide sequence