Experiment: Glycolic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25300 and ABID97_RS25305 are separated by 111 nucleotides ABID97_RS25305 and ABID97_RS25310 overlap by 4 nucleotides ABID97_RS25310 and ABID97_RS25315 are separated by 19 nucleotides ABID97_RS25315 and ABID97_RS25320 are separated by 69 nucleotides
ABID97_RS25300: ABID97_RS25300 - MFS transporter, at 5,242,287 to 5,243,513
_RS25300
ABID97_RS25305: ABID97_RS25305 - NAD(P)H-dependent oxidoreductase, at 5,243,625 to 5,244,212
_RS25305
ABID97_RS25310: ABID97_RS25310 - amidohydrolase family protein, at 5,244,209 to 5,245,486
_RS25310
ABID97_RS25315: ABID97_RS25315 - creatininase family protein, at 5,245,506 to 5,246,369
_RS25315
ABID97_RS25320: ABID97_RS25320 - ABC transporter substrate-binding protein, at 5,246,439 to 5,247,425
_RS25320
Position (kb) 5244
5245
5246 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5243.320 kb on - strand, within ABID97_RS25300 at 5243.512 kb on - strand at 5243.588 kb on + strand at 5243.610 kb on + strand at 5243.643 kb on + strand at 5243.644 kb on - strand at 5243.742 kb on + strand, within ABID97_RS25305 at 5243.742 kb on + strand, within ABID97_RS25305 at 5243.743 kb on - strand, within ABID97_RS25305 at 5243.743 kb on - strand, within ABID97_RS25305 at 5243.829 kb on + strand, within ABID97_RS25305 at 5243.829 kb on + strand, within ABID97_RS25305 at 5243.830 kb on - strand, within ABID97_RS25305 at 5243.913 kb on + strand, within ABID97_RS25305 at 5243.913 kb on + strand, within ABID97_RS25305 at 5243.913 kb on + strand, within ABID97_RS25305 at 5243.914 kb on - strand, within ABID97_RS25305 at 5244.019 kb on - strand, within ABID97_RS25305 at 5244.045 kb on + strand, within ABID97_RS25305 at 5244.046 kb on - strand, within ABID97_RS25305 at 5244.046 kb on - strand, within ABID97_RS25305 at 5244.046 kb on - strand, within ABID97_RS25305 at 5244.046 kb on - strand, within ABID97_RS25305 at 5244.046 kb on - strand, within ABID97_RS25305 at 5244.046 kb on - strand, within ABID97_RS25305 at 5244.046 kb on - strand, within ABID97_RS25305 at 5244.046 kb on - strand, within ABID97_RS25305 at 5244.046 kb on - strand, within ABID97_RS25305 at 5244.081 kb on + strand, within ABID97_RS25305 at 5244.121 kb on - strand, within ABID97_RS25305 at 5244.121 kb on - strand, within ABID97_RS25305 at 5244.132 kb on + strand, within ABID97_RS25305 at 5244.132 kb on + strand, within ABID97_RS25305 at 5244.132 kb on + strand, within ABID97_RS25305 at 5244.133 kb on - strand, within ABID97_RS25305 at 5244.133 kb on - strand, within ABID97_RS25305 at 5245.518 kb on + strand at 5245.518 kb on + strand at 5245.545 kb on + strand at 5245.546 kb on - strand at 5245.740 kb on + strand, within ABID97_RS25315 at 5245.740 kb on + strand, within ABID97_RS25315 at 5245.741 kb on - strand, within ABID97_RS25315 at 5245.741 kb on - strand, within ABID97_RS25315 at 5245.741 kb on - strand, within ABID97_RS25315 at 5245.741 kb on - strand, within ABID97_RS25315 at 5245.836 kb on + strand, within ABID97_RS25315 at 5246.355 kb on + strand at 5246.355 kb on + strand at 5246.356 kb on - strand at 5246.356 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycolic Acid (C) remove 5,243,320 - ABID97_RS25300 0.84 -1.4 5,243,512 - -1.7 5,243,588 + -0.8 5,243,610 + -1.2 5,243,643 + +2.0 5,243,644 - -0.1 5,243,742 + ABID97_RS25305 0.20 -0.7 5,243,742 + ABID97_RS25305 0.20 +0.7 5,243,743 - ABID97_RS25305 0.20 -0.4 5,243,743 - ABID97_RS25305 0.20 -1.4 5,243,829 + ABID97_RS25305 0.35 -0.7 5,243,829 + ABID97_RS25305 0.35 -0.9 5,243,830 - ABID97_RS25305 0.35 -0.6 5,243,913 + ABID97_RS25305 0.49 -0.9 5,243,913 + ABID97_RS25305 0.49 -3.4 5,243,913 + ABID97_RS25305 0.49 -0.5 5,243,914 - ABID97_RS25305 0.49 -0.6 5,244,019 - ABID97_RS25305 0.67 -0.2 5,244,045 + ABID97_RS25305 0.71 -0.8 5,244,046 - ABID97_RS25305 0.72 -0.3 5,244,046 - ABID97_RS25305 0.72 +0.2 5,244,046 - ABID97_RS25305 0.72 +0.1 5,244,046 - ABID97_RS25305 0.72 -0.0 5,244,046 - ABID97_RS25305 0.72 -0.4 5,244,046 - ABID97_RS25305 0.72 -0.6 5,244,046 - ABID97_RS25305 0.72 -0.5 5,244,046 - ABID97_RS25305 0.72 +0.0 5,244,046 - ABID97_RS25305 0.72 -0.4 5,244,081 + ABID97_RS25305 0.78 -0.0 5,244,121 - ABID97_RS25305 0.84 -1.5 5,244,121 - ABID97_RS25305 0.84 -1.3 5,244,132 + ABID97_RS25305 0.86 -0.0 5,244,132 + ABID97_RS25305 0.86 +1.0 5,244,132 + ABID97_RS25305 0.86 +0.3 5,244,133 - ABID97_RS25305 0.86 -0.4 5,244,133 - ABID97_RS25305 0.86 -0.5 5,245,518 + +0.1 5,245,518 + -0.8 5,245,545 + -0.8 5,245,546 - -0.2 5,245,740 + ABID97_RS25315 0.27 -0.5 5,245,740 + ABID97_RS25315 0.27 -0.7 5,245,741 - ABID97_RS25315 0.27 +0.3 5,245,741 - ABID97_RS25315 0.27 -0.1 5,245,741 - ABID97_RS25315 0.27 -0.5 5,245,741 - ABID97_RS25315 0.27 +1.0 5,245,836 + ABID97_RS25315 0.38 -0.0 5,246,355 + -1.3 5,246,355 + -1.5 5,246,356 - +0.6 5,246,356 - -1.1
Or see this region's nucleotide sequence