Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15835

Experiment: Glycolic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15825 and ABID97_RS15830 overlap by 52 nucleotidesABID97_RS15830 and ABID97_RS15835 are separated by 217 nucleotidesABID97_RS15835 and ABID97_RS15840 are separated by 54 nucleotides ABID97_RS15825: ABID97_RS15825 - LysR substrate-binding domain-containing protein, at 3,278,704 to 3,279,666 _RS15825 ABID97_RS15830: ABID97_RS15830 - fumarylacetoacetate hydrolase family protein, at 3,279,615 to 3,280,385 _RS15830 ABID97_RS15835: ABID97_RS15835 - tripartite tricarboxylate transporter substrate binding protein, at 3,280,603 to 3,281,580 _RS15835 ABID97_RS15840: ABID97_RS15840 - aminotransferase class V-fold PLP-dependent enzyme, at 3,281,635 to 3,282,879 _RS15840 Position (kb) 3280 3281 3282Strain fitness (log2 ratio) -1 0 1at 3279.617 kb on - strandat 3279.878 kb on - strand, within ABID97_RS15830at 3280.273 kb on + strand, within ABID97_RS15830at 3280.273 kb on + strandat 3280.274 kb on - strand, within ABID97_RS15830at 3280.591 kb on + strandat 3280.591 kb on + strandat 3280.591 kb on + strandat 3280.715 kb on + strand, within ABID97_RS15835at 3280.715 kb on + strand, within ABID97_RS15835at 3280.715 kb on + strand, within ABID97_RS15835at 3280.716 kb on - strand, within ABID97_RS15835at 3281.027 kb on + strand, within ABID97_RS15835at 3281.346 kb on - strand, within ABID97_RS15835at 3282.078 kb on - strand, within ABID97_RS15840

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycolic Acid (C)
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3,279,617 - +0.5
3,279,878 - ABID97_RS15830 0.34 -0.2
3,280,273 + ABID97_RS15830 0.85 -0.1
3,280,273 + +0.7
3,280,274 - ABID97_RS15830 0.85 -0.3
3,280,591 + +0.6
3,280,591 + -0.9
3,280,591 + -0.1
3,280,715 + ABID97_RS15835 0.11 -0.1
3,280,715 + ABID97_RS15835 0.11 -0.0
3,280,715 + ABID97_RS15835 0.11 -0.1
3,280,716 - ABID97_RS15835 0.12 -0.6
3,281,027 + ABID97_RS15835 0.43 -0.0
3,281,346 - ABID97_RS15835 0.76 -1.1
3,282,078 - ABID97_RS15840 0.36 +0.3

Or see this region's nucleotide sequence