Experiment: Glycolic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04640 and ABID97_RS04645 are separated by 72 nucleotides ABID97_RS04645 and ABID97_RS04650 are separated by 126 nucleotides
ABID97_RS04640: ABID97_RS04640 - ABC transporter substrate-binding protein, at 967,095 to 968,234
_RS04640
ABID97_RS04645: ABID97_RS04645 - MFS transporter, at 968,307 to 969,791
_RS04645
ABID97_RS04650: ABID97_RS04650 - putative zinc-binding metallopeptidase, at 969,918 to 971,312
_RS04650
Position (kb) 968
969
970 Strain fitness (log2 ratio) -1
0
1
2 at 967.310 kb on - strand, within ABID97_RS04640 at 967.385 kb on - strand, within ABID97_RS04640 at 967.470 kb on + strand, within ABID97_RS04640 at 967.471 kb on + strand, within ABID97_RS04640 at 967.498 kb on + strand, within ABID97_RS04640 at 967.498 kb on + strand, within ABID97_RS04640 at 967.498 kb on + strand, within ABID97_RS04640 at 967.498 kb on + strand, within ABID97_RS04640 at 967.499 kb on - strand, within ABID97_RS04640 at 967.512 kb on + strand, within ABID97_RS04640 at 967.512 kb on + strand, within ABID97_RS04640 at 967.512 kb on + strand, within ABID97_RS04640 at 967.513 kb on - strand, within ABID97_RS04640 at 967.540 kb on + strand, within ABID97_RS04640 at 967.540 kb on + strand, within ABID97_RS04640 at 967.541 kb on - strand, within ABID97_RS04640 at 967.541 kb on - strand, within ABID97_RS04640 at 968.234 kb on + strand at 968.234 kb on + strand at 968.234 kb on + strand at 968.235 kb on - strand at 968.253 kb on + strand at 968.845 kb on + strand, within ABID97_RS04645 at 968.845 kb on + strand, within ABID97_RS04645 at 968.846 kb on - strand, within ABID97_RS04645 at 968.846 kb on - strand, within ABID97_RS04645 at 968.846 kb on - strand, within ABID97_RS04645 at 968.846 kb on - strand, within ABID97_RS04645 at 968.860 kb on + strand, within ABID97_RS04645 at 968.860 kb on + strand, within ABID97_RS04645 at 968.861 kb on - strand, within ABID97_RS04645 at 968.861 kb on - strand, within ABID97_RS04645 at 968.887 kb on + strand, within ABID97_RS04645 at 968.888 kb on - strand, within ABID97_RS04645 at 968.888 kb on - strand, within ABID97_RS04645 at 968.888 kb on - strand, within ABID97_RS04645 at 968.888 kb on - strand, within ABID97_RS04645 at 968.926 kb on + strand, within ABID97_RS04645 at 968.926 kb on + strand, within ABID97_RS04645 at 969.496 kb on + strand, within ABID97_RS04645 at 969.496 kb on + strand, within ABID97_RS04645 at 969.496 kb on + strand, within ABID97_RS04645 at 969.837 kb on + strand at 969.837 kb on + strand at 969.837 kb on + strand at 969.838 kb on - strand at 969.838 kb on - strand at 970.086 kb on + strand, within ABID97_RS04650 at 970.320 kb on + strand, within ABID97_RS04650 at 970.662 kb on + strand, within ABID97_RS04650 at 970.665 kb on + strand, within ABID97_RS04650 at 970.666 kb on - strand, within ABID97_RS04650 at 970.666 kb on - strand, within ABID97_RS04650
Per-strain Table
Position Strand Gene LocusTag Fraction Glycolic Acid (C) remove 967,310 - ABID97_RS04640 0.19 -0.4 967,385 - ABID97_RS04640 0.25 +0.3 967,470 + ABID97_RS04640 0.33 +1.9 967,471 + ABID97_RS04640 0.33 +1.3 967,498 + ABID97_RS04640 0.35 -0.3 967,498 + ABID97_RS04640 0.35 +0.3 967,498 + ABID97_RS04640 0.35 +1.4 967,498 + ABID97_RS04640 0.35 +1.4 967,499 - ABID97_RS04640 0.35 -0.2 967,512 + ABID97_RS04640 0.37 -0.0 967,512 + ABID97_RS04640 0.37 +0.1 967,512 + ABID97_RS04640 0.37 -0.6 967,513 - ABID97_RS04640 0.37 -0.1 967,540 + ABID97_RS04640 0.39 +0.1 967,540 + ABID97_RS04640 0.39 +0.7 967,541 - ABID97_RS04640 0.39 +0.4 967,541 - ABID97_RS04640 0.39 +0.6 968,234 + +1.0 968,234 + -0.2 968,234 + +0.0 968,235 - +0.1 968,253 + +0.4 968,845 + ABID97_RS04645 0.36 -0.1 968,845 + ABID97_RS04645 0.36 -0.1 968,846 - ABID97_RS04645 0.36 +0.2 968,846 - ABID97_RS04645 0.36 -1.1 968,846 - ABID97_RS04645 0.36 +0.4 968,846 - ABID97_RS04645 0.36 -0.1 968,860 + ABID97_RS04645 0.37 -0.4 968,860 + ABID97_RS04645 0.37 +0.1 968,861 - ABID97_RS04645 0.37 -0.6 968,861 - ABID97_RS04645 0.37 -0.2 968,887 + ABID97_RS04645 0.39 +0.3 968,888 - ABID97_RS04645 0.39 +0.6 968,888 - ABID97_RS04645 0.39 +0.4 968,888 - ABID97_RS04645 0.39 -0.2 968,888 - ABID97_RS04645 0.39 +0.0 968,926 + ABID97_RS04645 0.42 +0.2 968,926 + ABID97_RS04645 0.42 +0.1 969,496 + ABID97_RS04645 0.80 +0.3 969,496 + ABID97_RS04645 0.80 +0.2 969,496 + ABID97_RS04645 0.80 -0.1 969,837 + -0.3 969,837 + +0.5 969,837 + +0.1 969,838 - -0.4 969,838 - -0.7 970,086 + ABID97_RS04650 0.12 +0.2 970,320 + ABID97_RS04650 0.29 +0.7 970,662 + ABID97_RS04650 0.53 -0.7 970,665 + ABID97_RS04650 0.54 -0.1 970,666 - ABID97_RS04650 0.54 +0.4 970,666 - ABID97_RS04650 0.54 +0.3
Or see this region's nucleotide sequence