Experiment: Glycolic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04615 and ABID97_RS04620 are separated by 10 nucleotides ABID97_RS04620 and ABID97_RS04625 are separated by 117 nucleotides ABID97_RS04625 and ABID97_RS04630 overlap by 4 nucleotides ABID97_RS04630 and ABID97_RS04635 are separated by 18 nucleotides
ABID97_RS04615: ABID97_RS04615 - polysaccharide deacetylase family protein, at 962,554 to 963,477
_RS04615
ABID97_RS04620: ABID97_RS04620 - nuclear transport factor 2 family protein, at 963,488 to 963,925
_RS04620
ABID97_RS04625: ABID97_RS04625 - benzoate/H(+) symporter BenE family transporter, at 964,043 to 965,308
_RS04625
ABID97_RS04630: ABID97_RS04630 - glutathione synthase, at 965,305 to 966,258
_RS04630
ABID97_RS04635: ABID97_RS04635 - class II glutamine amidotransferase, at 966,277 to 967,044
_RS04635
Position (kb) 964
965
966 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 963.176 kb on + strand, within ABID97_RS04615 at 963.368 kb on + strand, within ABID97_RS04615 at 963.368 kb on + strand, within ABID97_RS04615 at 963.368 kb on + strand, within ABID97_RS04615 at 963.368 kb on + strand, within ABID97_RS04615 at 963.369 kb on - strand, within ABID97_RS04615 at 963.402 kb on - strand at 963.428 kb on + strand at 963.429 kb on - strand at 963.579 kb on + strand, within ABID97_RS04620 at 963.591 kb on + strand, within ABID97_RS04620 at 963.591 kb on + strand, within ABID97_RS04620 at 963.592 kb on - strand, within ABID97_RS04620 at 963.633 kb on + strand, within ABID97_RS04620 at 963.633 kb on + strand, within ABID97_RS04620 at 963.634 kb on - strand, within ABID97_RS04620 at 963.652 kb on - strand, within ABID97_RS04620 at 963.652 kb on - strand, within ABID97_RS04620 at 963.723 kb on + strand, within ABID97_RS04620 at 963.724 kb on - strand, within ABID97_RS04620 at 963.724 kb on - strand, within ABID97_RS04620 at 963.724 kb on - strand, within ABID97_RS04620 at 963.810 kb on + strand, within ABID97_RS04620 at 963.810 kb on + strand, within ABID97_RS04620 at 963.811 kb on - strand, within ABID97_RS04620 at 964.308 kb on - strand, within ABID97_RS04625 at 964.308 kb on - strand, within ABID97_RS04625 at 964.308 kb on - strand, within ABID97_RS04625 at 964.517 kb on + strand, within ABID97_RS04625 at 964.518 kb on - strand, within ABID97_RS04625 at 964.518 kb on - strand, within ABID97_RS04625 at 964.518 kb on - strand, within ABID97_RS04625 at 964.547 kb on + strand, within ABID97_RS04625 at 964.760 kb on + strand, within ABID97_RS04625 at 964.940 kb on + strand, within ABID97_RS04625 at 964.941 kb on - strand, within ABID97_RS04625 at 964.941 kb on - strand, within ABID97_RS04625 at 964.941 kb on - strand, within ABID97_RS04625 at 965.353 kb on + strand at 965.353 kb on + strand at 965.353 kb on + strand at 965.354 kb on - strand at 965.590 kb on + strand, within ABID97_RS04630 at 965.590 kb on + strand, within ABID97_RS04630 at 965.591 kb on - strand, within ABID97_RS04630 at 965.596 kb on + strand, within ABID97_RS04630 at 965.596 kb on + strand, within ABID97_RS04630 at 965.597 kb on - strand, within ABID97_RS04630 at 965.597 kb on - strand, within ABID97_RS04630 at 965.597 kb on - strand, within ABID97_RS04630 at 965.597 kb on - strand, within ABID97_RS04630 at 965.846 kb on + strand, within ABID97_RS04630 at 965.847 kb on - strand, within ABID97_RS04630
Per-strain Table
Position Strand Gene LocusTag Fraction Glycolic Acid (C) remove 963,176 + ABID97_RS04615 0.67 -0.2 963,368 + ABID97_RS04615 0.88 +0.3 963,368 + ABID97_RS04615 0.88 +0.1 963,368 + ABID97_RS04615 0.88 +0.4 963,368 + ABID97_RS04615 0.88 -0.4 963,369 - ABID97_RS04615 0.88 +0.4 963,402 - -0.4 963,428 + +0.0 963,429 - +0.2 963,579 + ABID97_RS04620 0.21 +1.4 963,591 + ABID97_RS04620 0.24 +0.2 963,591 + ABID97_RS04620 0.24 -1.4 963,592 - ABID97_RS04620 0.24 -2.3 963,633 + ABID97_RS04620 0.33 -0.8 963,633 + ABID97_RS04620 0.33 -1.1 963,634 - ABID97_RS04620 0.33 -1.1 963,652 - ABID97_RS04620 0.37 +0.3 963,652 - ABID97_RS04620 0.37 +0.9 963,723 + ABID97_RS04620 0.54 +0.3 963,724 - ABID97_RS04620 0.54 -1.1 963,724 - ABID97_RS04620 0.54 +0.7 963,724 - ABID97_RS04620 0.54 -0.2 963,810 + ABID97_RS04620 0.74 -0.4 963,810 + ABID97_RS04620 0.74 -0.0 963,811 - ABID97_RS04620 0.74 +0.3 964,308 - ABID97_RS04625 0.21 +0.4 964,308 - ABID97_RS04625 0.21 +0.2 964,308 - ABID97_RS04625 0.21 +0.5 964,517 + ABID97_RS04625 0.37 +0.9 964,518 - ABID97_RS04625 0.38 +0.4 964,518 - ABID97_RS04625 0.38 -0.1 964,518 - ABID97_RS04625 0.38 +0.9 964,547 + ABID97_RS04625 0.40 +0.4 964,760 + ABID97_RS04625 0.57 +0.2 964,940 + ABID97_RS04625 0.71 +0.1 964,941 - ABID97_RS04625 0.71 -0.6 964,941 - ABID97_RS04625 0.71 +0.9 964,941 - ABID97_RS04625 0.71 +0.1 965,353 + -2.5 965,353 + -3.8 965,353 + -2.8 965,354 - -3.3 965,590 + ABID97_RS04630 0.30 -1.4 965,590 + ABID97_RS04630 0.30 -3.6 965,591 - ABID97_RS04630 0.30 -2.2 965,596 + ABID97_RS04630 0.31 +0.4 965,596 + ABID97_RS04630 0.31 -1.1 965,597 - ABID97_RS04630 0.31 -3.6 965,597 - ABID97_RS04630 0.31 -2.3 965,597 - ABID97_RS04630 0.31 -3.1 965,597 - ABID97_RS04630 0.31 +0.4 965,846 + ABID97_RS04630 0.57 -1.6 965,847 - ABID97_RS04630 0.57 -3.5
Or see this region's nucleotide sequence