Experiment: Glycolic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00935 and ABID97_RS00940 are separated by 33 nucleotides ABID97_RS00940 and ABID97_RS00945 are separated by 50 nucleotides
ABID97_RS00935: ABID97_RS00935 - DUF2855 family protein, at 187,744 to 188,859
_RS00935
ABID97_RS00940: ABID97_RS00940 - serine/threonine protein kinase, at 188,893 to 189,930
_RS00940
ABID97_RS00945: ABID97_RS00945 - molecular chaperone HtpG, at 189,981 to 192,017
_RS00945
Position (kb) 188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 187.909 kb on + strand, within ABID97_RS00935 at 187.909 kb on + strand, within ABID97_RS00935 at 187.910 kb on - strand, within ABID97_RS00935 at 188.021 kb on - strand, within ABID97_RS00935 at 188.021 kb on - strand, within ABID97_RS00935 at 188.125 kb on + strand, within ABID97_RS00935 at 188.126 kb on - strand, within ABID97_RS00935 at 188.134 kb on + strand, within ABID97_RS00935 at 188.135 kb on - strand, within ABID97_RS00935 at 188.135 kb on - strand, within ABID97_RS00935 at 188.135 kb on - strand, within ABID97_RS00935 at 188.161 kb on + strand, within ABID97_RS00935 at 188.161 kb on + strand, within ABID97_RS00935 at 188.162 kb on - strand, within ABID97_RS00935 at 188.399 kb on - strand, within ABID97_RS00935 at 188.416 kb on + strand, within ABID97_RS00935 at 188.458 kb on + strand, within ABID97_RS00935 at 188.837 kb on - strand at 188.877 kb on + strand at 188.933 kb on - strand at 189.035 kb on - strand, within ABID97_RS00940 at 189.035 kb on - strand, within ABID97_RS00940 at 189.035 kb on - strand, within ABID97_RS00940 at 189.419 kb on + strand at 189.419 kb on + strand, within ABID97_RS00940 at 189.420 kb on - strand, within ABID97_RS00940 at 189.784 kb on + strand, within ABID97_RS00940 at 189.785 kb on - strand, within ABID97_RS00940 at 189.859 kb on + strand at 189.922 kb on + strand at 189.922 kb on + strand at 189.922 kb on + strand at 189.923 kb on - strand at 190.012 kb on + strand at 190.012 kb on + strand at 190.012 kb on + strand at 190.012 kb on + strand at 190.013 kb on - strand at 190.435 kb on + strand, within ABID97_RS00945 at 190.435 kb on + strand, within ABID97_RS00945 at 190.436 kb on - strand, within ABID97_RS00945 at 190.436 kb on - strand, within ABID97_RS00945 at 190.552 kb on + strand, within ABID97_RS00945 at 190.553 kb on - strand, within ABID97_RS00945 at 190.553 kb on - strand, within ABID97_RS00945 at 190.553 kb on - strand, within ABID97_RS00945 at 190.553 kb on - strand, within ABID97_RS00945 at 190.555 kb on + strand, within ABID97_RS00945 at 190.556 kb on - strand, within ABID97_RS00945 at 190.591 kb on + strand, within ABID97_RS00945 at 190.592 kb on - strand, within ABID97_RS00945 at 190.592 kb on - strand, within ABID97_RS00945 at 190.717 kb on + strand, within ABID97_RS00945 at 190.718 kb on - strand, within ABID97_RS00945 at 190.729 kb on + strand, within ABID97_RS00945 at 190.730 kb on - strand, within ABID97_RS00945 at 190.730 kb on - strand, within ABID97_RS00945
Per-strain Table
Position Strand Gene LocusTag Fraction Glycolic Acid (C) remove 187,909 + ABID97_RS00935 0.15 -0.1 187,909 + ABID97_RS00935 0.15 -0.3 187,910 - ABID97_RS00935 0.15 -0.2 188,021 - ABID97_RS00935 0.25 -2.9 188,021 - ABID97_RS00935 0.25 -1.1 188,125 + ABID97_RS00935 0.34 -0.3 188,126 - ABID97_RS00935 0.34 +0.3 188,134 + ABID97_RS00935 0.35 -0.4 188,135 - ABID97_RS00935 0.35 +0.0 188,135 - ABID97_RS00935 0.35 +0.7 188,135 - ABID97_RS00935 0.35 -0.1 188,161 + ABID97_RS00935 0.37 +0.3 188,161 + ABID97_RS00935 0.37 -0.6 188,162 - ABID97_RS00935 0.37 +0.7 188,399 - ABID97_RS00935 0.59 -0.2 188,416 + ABID97_RS00935 0.60 -1.0 188,458 + ABID97_RS00935 0.64 -0.6 188,837 - -0.7 188,877 + -0.3 188,933 - +0.7 189,035 - ABID97_RS00940 0.14 +0.4 189,035 - ABID97_RS00940 0.14 +0.8 189,035 - ABID97_RS00940 0.14 -2.4 189,419 + +1.9 189,419 + ABID97_RS00940 0.51 -0.3 189,420 - ABID97_RS00940 0.51 -1.4 189,784 + ABID97_RS00940 0.86 -0.5 189,785 - ABID97_RS00940 0.86 -0.8 189,859 + -0.1 189,922 + +0.1 189,922 + -0.1 189,922 + -0.3 189,923 - +0.3 190,012 + -0.0 190,012 + -0.3 190,012 + +0.4 190,012 + +1.6 190,013 - -0.6 190,435 + ABID97_RS00945 0.22 -0.9 190,435 + ABID97_RS00945 0.22 +0.7 190,436 - ABID97_RS00945 0.22 +0.3 190,436 - ABID97_RS00945 0.22 -0.6 190,552 + ABID97_RS00945 0.28 +0.3 190,553 - ABID97_RS00945 0.28 -0.6 190,553 - ABID97_RS00945 0.28 +0.3 190,553 - ABID97_RS00945 0.28 -0.0 190,553 - ABID97_RS00945 0.28 -0.3 190,555 + ABID97_RS00945 0.28 +0.1 190,556 - ABID97_RS00945 0.28 -0.4 190,591 + ABID97_RS00945 0.30 +0.2 190,592 - ABID97_RS00945 0.30 +0.3 190,592 - ABID97_RS00945 0.30 +0.3 190,717 + ABID97_RS00945 0.36 +0.3 190,718 - ABID97_RS00945 0.36 +0.6 190,729 + ABID97_RS00945 0.37 -0.8 190,730 - ABID97_RS00945 0.37 +0.9 190,730 - ABID97_RS00945 0.37 +0.0
Or see this region's nucleotide sequence