Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yegT and yegU overlap by 4 nucleotides yegU and yegV overlap by 4 nucleotides yegV and yegW overlap by 27 nucleotides
b2098: yegT - predicted nucleoside transporter (NCBI), at 2,176,843 to 2,178,120
yegT
b2099: yegU - predicted hydrolase (NCBI), at 2,178,117 to 2,179,121
yegU
b2100: yegV - predicted kinase (NCBI), at 2,179,118 to 2,180,083
yegV
b2101: yegW - predicted DNA-binding transcriptional regulator (NCBI), at 2,180,057 to 2,180,803
yegW
Position (kb)
2178
2179
2180 Strain fitness (log2 ratio)
-1
0
1 at 2177.161 kb on - strand, within yegT at 2177.165 kb on - strand, within yegT at 2177.287 kb on + strand, within yegT at 2177.301 kb on - strand, within yegT at 2177.359 kb on - strand, within yegT at 2177.359 kb on - strand, within yegT at 2177.451 kb on - strand, within yegT at 2177.521 kb on + strand, within yegT at 2177.521 kb on + strand, within yegT at 2177.531 kb on - strand, within yegT at 2177.790 kb on + strand, within yegT at 2177.830 kb on + strand, within yegT at 2177.862 kb on + strand, within yegT at 2177.873 kb on + strand, within yegT at 2177.966 kb on + strand, within yegT at 2177.974 kb on - strand, within yegT at 2178.144 kb on + strand at 2178.181 kb on + strand at 2178.299 kb on + strand, within yegU at 2178.381 kb on + strand, within yegU at 2178.588 kb on - strand, within yegU at 2178.600 kb on - strand, within yegU at 2178.717 kb on - strand, within yegU at 2178.859 kb on + strand, within yegU at 2178.893 kb on + strand, within yegU at 2178.893 kb on + strand, within yegU at 2178.920 kb on + strand, within yegU at 2179.014 kb on - strand, within yegU at 2179.214 kb on + strand at 2179.221 kb on - strand, within yegV at 2179.222 kb on - strand, within yegV at 2179.310 kb on + strand, within yegV at 2179.396 kb on - strand, within yegV at 2179.448 kb on - strand, within yegV at 2179.906 kb on - strand, within yegV at 2179.906 kb on - strand, within yegV at 2179.993 kb on - strand at 2180.103 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 2,177,161 - yegT b2098 0.25 +0.0 2,177,165 - yegT b2098 0.25 +0.6 2,177,287 + yegT b2098 0.35 +0.2 2,177,301 - yegT b2098 0.36 +0.5 2,177,359 - yegT b2098 0.40 -0.3 2,177,359 - yegT b2098 0.40 +0.3 2,177,451 - yegT b2098 0.48 -0.9 2,177,521 + yegT b2098 0.53 +0.2 2,177,521 + yegT b2098 0.53 +0.3 2,177,531 - yegT b2098 0.54 -0.7 2,177,790 + yegT b2098 0.74 +0.9 2,177,830 + yegT b2098 0.77 -0.4 2,177,862 + yegT b2098 0.80 +0.4 2,177,873 + yegT b2098 0.81 +0.4 2,177,966 + yegT b2098 0.88 +0.3 2,177,974 - yegT b2098 0.88 -0.8 2,178,144 + +0.0 2,178,181 + +0.2 2,178,299 + yegU b2099 0.18 +0.7 2,178,381 + yegU b2099 0.26 +0.0 2,178,588 - yegU b2099 0.47 +0.7 2,178,600 - yegU b2099 0.48 +0.6 2,178,717 - yegU b2099 0.60 +0.7 2,178,859 + yegU b2099 0.74 +0.3 2,178,893 + yegU b2099 0.77 +1.3 2,178,893 + yegU b2099 0.77 +0.8 2,178,920 + yegU b2099 0.80 -0.1 2,179,014 - yegU b2099 0.89 -0.7 2,179,214 + +0.2 2,179,221 - yegV b2100 0.11 +0.1 2,179,222 - yegV b2100 0.11 -0.1 2,179,310 + yegV b2100 0.20 -0.0 2,179,396 - yegV b2100 0.29 +0.3 2,179,448 - yegV b2100 0.34 -0.7 2,179,906 - yegV b2100 0.82 +0.5 2,179,906 - yegV b2100 0.82 -0.4 2,179,993 - -0.5 2,180,103 + -0.3
Or see this region's nucleotide sequence