Strain Fitness in Escherichia coli BW25113 around b0166

Experiment: D-Glucuronic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyaeI and dapD are separated by 53 nucleotidesdapD and glnD are separated by 30 nucleotides b0164: yaeI - orf, hypothetical protein (VIMSS), at 184,257 to 185,069 yaeI b0166: dapD - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (NCBI), at 185,123 to 185,947 dapD b0167: glnD - PII uridylyl-transferase (NCBI), at 185,978 to 188,650 glnD Position (kb) 185 186Strain fitness (log2 ratio) -1 0 1 2at 184.130 kb on + strandat 184.193 kb on - strandat 184.283 kb on - strandat 184.283 kb on - strandat 184.312 kb on + strandat 184.351 kb on - strand, within yaeIat 184.439 kb on + strand, within yaeIat 184.455 kb on + strand, within yaeIat 184.579 kb on + strand, within yaeIat 184.622 kb on - strand, within yaeIat 184.636 kb on - strand, within yaeIat 184.636 kb on - strand, within yaeIat 184.701 kb on - strand, within yaeIat 184.755 kb on + strand, within yaeIat 184.757 kb on - strand, within yaeIat 184.899 kb on - strand, within yaeIat 184.899 kb on - strand, within yaeIat 184.928 kb on + strand, within yaeIat 184.928 kb on + strand, within yaeIat 184.993 kb on - strandat 184.993 kb on - strandat 185.102 kb on + strandat 185.102 kb on + strandat 185.105 kb on - strandat 185.107 kb on + strandat 185.949 kb on + strandat 185.969 kb on + strandat 185.969 kb on + strandat 185.976 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C)
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184,130 + +0.5
184,193 - +0.1
184,283 - +0.5
184,283 - +0.2
184,312 + -0.5
184,351 - yaeI b0164 0.12 -0.5
184,439 + yaeI b0164 0.22 -0.0
184,455 + yaeI b0164 0.24 -1.0
184,579 + yaeI b0164 0.40 +0.1
184,622 - yaeI b0164 0.45 -0.0
184,636 - yaeI b0164 0.47 -1.2
184,636 - yaeI b0164 0.47 +2.0
184,701 - yaeI b0164 0.55 +0.3
184,755 + yaeI b0164 0.61 +0.2
184,757 - yaeI b0164 0.62 -0.4
184,899 - yaeI b0164 0.79 +0.5
184,899 - yaeI b0164 0.79 +0.9
184,928 + yaeI b0164 0.83 +0.3
184,928 + yaeI b0164 0.83 +0.3
184,993 - -0.1
184,993 - +1.2
185,102 + +0.1
185,102 + -0.5
185,105 - -0.0
185,107 + -0.8
185,949 + +0.6
185,969 + +0.2
185,969 + +0.0
185,976 - -0.8

Or see this region's nucleotide sequence