Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS11365 and RPSI07_RS11370 are separated by 20 nucleotides RPSI07_RS11370 and RPSI07_RS11375 are separated by 74 nucleotides RPSI07_RS11375 and RPSI07_RS11380 are separated by 166 nucleotides
RPSI07_RS11365: RPSI07_RS11365 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 747,075 to 747,824
_RS11365
RPSI07_RS11370: RPSI07_RS11370 - VOC family protein, at 747,845 to 748,270
_RS11370
RPSI07_RS11375: RPSI07_RS11375 - transcriptional regulator GcvA, at 748,345 to 749,271
_RS11375
RPSI07_RS11380: RPSI07_RS11380 - porin, at 749,438 to 750,499
_RS11380
Position (kb) 748
749
750 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 747.595 kb on + strand, within RPSI07_RS11365 at 747.596 kb on - strand, within RPSI07_RS11365 at 747.596 kb on - strand, within RPSI07_RS11365 at 747.984 kb on + strand, within RPSI07_RS11370 at 748.098 kb on - strand, within RPSI07_RS11370 at 748.113 kb on + strand, within RPSI07_RS11370 at 748.114 kb on - strand, within RPSI07_RS11370 at 748.114 kb on - strand, within RPSI07_RS11370 at 748.114 kb on - strand, within RPSI07_RS11370 at 748.114 kb on - strand, within RPSI07_RS11370 at 748.188 kb on + strand, within RPSI07_RS11370 at 748.188 kb on + strand, within RPSI07_RS11370 at 748.188 kb on + strand, within RPSI07_RS11370 at 748.227 kb on + strand, within RPSI07_RS11370 at 748.228 kb on - strand at 748.312 kb on + strand at 748.312 kb on + strand at 748.313 kb on - strand at 748.313 kb on - strand at 748.472 kb on + strand, within RPSI07_RS11375 at 748.473 kb on - strand, within RPSI07_RS11375 at 748.473 kb on - strand, within RPSI07_RS11375 at 748.475 kb on + strand, within RPSI07_RS11375 at 748.475 kb on + strand, within RPSI07_RS11375 at 748.475 kb on + strand, within RPSI07_RS11375 at 748.537 kb on + strand, within RPSI07_RS11375 at 748.538 kb on + strand, within RPSI07_RS11375 at 748.538 kb on + strand, within RPSI07_RS11375 at 748.538 kb on + strand, within RPSI07_RS11375 at 748.538 kb on + strand, within RPSI07_RS11375 at 748.539 kb on - strand, within RPSI07_RS11375 at 748.934 kb on + strand, within RPSI07_RS11375 at 748.935 kb on - strand, within RPSI07_RS11375 at 748.975 kb on + strand, within RPSI07_RS11375 at 749.066 kb on + strand, within RPSI07_RS11375 at 749.066 kb on + strand, within RPSI07_RS11375 at 749.067 kb on - strand, within RPSI07_RS11375 at 749.067 kb on - strand, within RPSI07_RS11375 at 749.067 kb on - strand, within RPSI07_RS11375 at 749.067 kb on - strand, within RPSI07_RS11375 at 749.067 kb on - strand, within RPSI07_RS11375 at 749.067 kb on - strand, within RPSI07_RS11375 at 749.067 kb on - strand, within RPSI07_RS11375 at 749.308 kb on + strand at 749.308 kb on + strand at 749.309 kb on - strand at 749.309 kb on - strand at 749.309 kb on - strand at 749.342 kb on + strand at 749.343 kb on - strand at 749.415 kb on + strand at 749.415 kb on + strand at 749.416 kb on - strand at 749.518 kb on + strand at 749.561 kb on + strand, within RPSI07_RS11380 at 749.561 kb on + strand, within RPSI07_RS11380 at 749.562 kb on - strand, within RPSI07_RS11380 at 749.925 kb on - strand, within RPSI07_RS11380 at 749.925 kb on - strand, within RPSI07_RS11380 at 750.029 kb on + strand, within RPSI07_RS11380 at 750.063 kb on - strand, within RPSI07_RS11380 at 750.063 kb on - strand, within RPSI07_RS11380 at 750.063 kb on - strand, within RPSI07_RS11380 at 750.063 kb on - strand, within RPSI07_RS11380 at 750.063 kb on - strand, within RPSI07_RS11380 at 750.063 kb on - strand, within RPSI07_RS11380 at 750.092 kb on + strand, within RPSI07_RS11380 at 750.092 kb on + strand, within RPSI07_RS11380 at 750.105 kb on - strand, within RPSI07_RS11380 at 750.164 kb on + strand, within RPSI07_RS11380 at 750.164 kb on + strand, within RPSI07_RS11380 at 750.164 kb on + strand, within RPSI07_RS11380 at 750.165 kb on - strand, within RPSI07_RS11380 at 750.165 kb on - strand, within RPSI07_RS11380 at 750.230 kb on + strand, within RPSI07_RS11380 at 750.230 kb on + strand, within RPSI07_RS11380 at 750.248 kb on + strand, within RPSI07_RS11380 at 750.248 kb on + strand, within RPSI07_RS11380 at 750.249 kb on - strand, within RPSI07_RS11380 at 750.249 kb on - strand, within RPSI07_RS11380 at 750.249 kb on - strand, within RPSI07_RS11380 at 750.249 kb on - strand, within RPSI07_RS11380 at 750.249 kb on - strand, within RPSI07_RS11380 at 750.249 kb on - strand, within RPSI07_RS11380 at 750.249 kb on - strand, within RPSI07_RS11380 at 750.249 kb on - strand, within RPSI07_RS11380 at 750.249 kb on - strand, within RPSI07_RS11380 at 750.249 kb on - strand, within RPSI07_RS11380
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 747,595 + RPSI07_RS11365 0.69 -0.8 747,596 - RPSI07_RS11365 0.69 +0.6 747,596 - RPSI07_RS11365 0.69 +0.3 747,984 + RPSI07_RS11370 0.33 -0.0 748,098 - RPSI07_RS11370 0.59 -0.2 748,113 + RPSI07_RS11370 0.63 -3.2 748,114 - RPSI07_RS11370 0.63 -0.1 748,114 - RPSI07_RS11370 0.63 +1.2 748,114 - RPSI07_RS11370 0.63 -0.5 748,114 - RPSI07_RS11370 0.63 +0.5 748,188 + RPSI07_RS11370 0.81 -0.7 748,188 + RPSI07_RS11370 0.81 -0.3 748,188 + RPSI07_RS11370 0.81 -0.6 748,227 + RPSI07_RS11370 0.90 +0.3 748,228 - -2.4 748,312 + +3.6 748,312 + +1.6 748,313 - -0.6 748,313 - -1.7 748,472 + RPSI07_RS11375 0.14 +2.1 748,473 - RPSI07_RS11375 0.14 -1.3 748,473 - RPSI07_RS11375 0.14 +0.6 748,475 + RPSI07_RS11375 0.14 -0.1 748,475 + RPSI07_RS11375 0.14 -0.2 748,475 + RPSI07_RS11375 0.14 -1.3 748,537 + RPSI07_RS11375 0.21 -1.5 748,538 + RPSI07_RS11375 0.21 -1.1 748,538 + RPSI07_RS11375 0.21 -0.2 748,538 + RPSI07_RS11375 0.21 -1.2 748,538 + RPSI07_RS11375 0.21 -0.9 748,539 - RPSI07_RS11375 0.21 +0.3 748,934 + RPSI07_RS11375 0.64 +0.8 748,935 - RPSI07_RS11375 0.64 -1.2 748,975 + RPSI07_RS11375 0.68 +0.6 749,066 + RPSI07_RS11375 0.78 -1.4 749,066 + RPSI07_RS11375 0.78 -0.4 749,067 - RPSI07_RS11375 0.78 +0.2 749,067 - RPSI07_RS11375 0.78 +0.5 749,067 - RPSI07_RS11375 0.78 +0.2 749,067 - RPSI07_RS11375 0.78 -0.9 749,067 - RPSI07_RS11375 0.78 +1.5 749,067 - RPSI07_RS11375 0.78 +0.6 749,067 - RPSI07_RS11375 0.78 +0.4 749,308 + -0.4 749,308 + -1.3 749,309 - -1.8 749,309 - +0.6 749,309 - -1.0 749,342 + -0.9 749,343 - -0.1 749,415 + +0.3 749,415 + -0.0 749,416 - +0.9 749,518 + +1.0 749,561 + RPSI07_RS11380 0.12 -0.2 749,561 + RPSI07_RS11380 0.12 -2.2 749,562 - RPSI07_RS11380 0.12 -0.3 749,925 - RPSI07_RS11380 0.46 -0.8 749,925 - RPSI07_RS11380 0.46 -1.5 750,029 + RPSI07_RS11380 0.56 +0.8 750,063 - RPSI07_RS11380 0.59 +0.8 750,063 - RPSI07_RS11380 0.59 +2.8 750,063 - RPSI07_RS11380 0.59 +0.1 750,063 - RPSI07_RS11380 0.59 -0.3 750,063 - RPSI07_RS11380 0.59 +1.2 750,063 - RPSI07_RS11380 0.59 -1.0 750,092 + RPSI07_RS11380 0.62 +0.6 750,092 + RPSI07_RS11380 0.62 -0.5 750,105 - RPSI07_RS11380 0.63 -0.2 750,164 + RPSI07_RS11380 0.68 -0.9 750,164 + RPSI07_RS11380 0.68 +0.9 750,164 + RPSI07_RS11380 0.68 +0.5 750,165 - RPSI07_RS11380 0.68 +2.4 750,165 - RPSI07_RS11380 0.68 +0.1 750,230 + RPSI07_RS11380 0.75 +1.1 750,230 + RPSI07_RS11380 0.75 +0.2 750,248 + RPSI07_RS11380 0.76 +1.5 750,248 + RPSI07_RS11380 0.76 +1.6 750,249 - RPSI07_RS11380 0.76 -0.6 750,249 - RPSI07_RS11380 0.76 -0.0 750,249 - RPSI07_RS11380 0.76 -0.9 750,249 - RPSI07_RS11380 0.76 +0.1 750,249 - RPSI07_RS11380 0.76 +0.5 750,249 - RPSI07_RS11380 0.76 -0.9 750,249 - RPSI07_RS11380 0.76 -0.1 750,249 - RPSI07_RS11380 0.76 -0.9 750,249 - RPSI07_RS11380 0.76 -0.4 750,249 - RPSI07_RS11380 0.76 -0.3
Or see this region's nucleotide sequence