Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS07375

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
1,954,770	+		RPSI07_RS07370	0.27	-0.9
1,954,770	+		RPSI07_RS07370	0.27	-0.3
1,954,770	+		RPSI07_RS07370	0.27	-1.7
1,954,770	+		RPSI07_RS07370	0.27	-1.9
1,954,770	+		RPSI07_RS07370	0.27	-1.7
1,954,770	+		RPSI07_RS07370	0.27	+1.9
1,954,770	+		RPSI07_RS07370	0.27	-0.2
1,954,770	+		RPSI07_RS07370	0.27	-1.0
1,954,770	+		RPSI07_RS07370	0.27	-1.5
1,954,771	-		RPSI07_RS07370	0.27	-1.3
1,954,771	-		RPSI07_RS07370	0.27	+0.4
1,954,771	-		RPSI07_RS07370	0.27	-1.7
1,954,827	+		RPSI07_RS07370	0.31	+2.3
1,954,827	+		RPSI07_RS07370	0.31	-0.3
1,954,827	+		RPSI07_RS07370	0.31	-0.3
1,954,827	+		RPSI07_RS07370	0.31	-1.8
1,954,827	+		RPSI07_RS07370	0.31	-0.3
1,954,827	+		RPSI07_RS07370	0.31	-1.7
1,954,827	+		RPSI07_RS07370	0.31	-1.0
1,954,827	+		RPSI07_RS07370	0.31	-1.9
1,954,827	+		RPSI07_RS07370	0.31	-1.1
1,954,827	+		RPSI07_RS07370	0.31	+1.2
1,954,827	+		RPSI07_RS07370	0.31	+0.5
1,954,827	+		RPSI07_RS07370	0.31	-1.9
1,954,827	+		RPSI07_RS07370	0.31	-0.5
1,954,827	+		RPSI07_RS07370	0.31	-0.5
1,954,827	+		RPSI07_RS07370	0.31	-1.2
1,954,828	-		RPSI07_RS07370	0.31	-2.5
1,954,828	-		RPSI07_RS07370	0.31	-3.0
1,954,828	-		RPSI07_RS07370	0.31	-0.8
1,954,828	-		RPSI07_RS07370	0.31	-1.3
1,954,828	-		RPSI07_RS07370	0.31	-1.8
1,954,828	-		RPSI07_RS07370	0.31	-2.8
1,954,828	-		RPSI07_RS07370	0.31	-0.9
1,954,830	+		RPSI07_RS07370	0.32	-1.4
1,954,830	+		RPSI07_RS07370	0.32	-0.2
1,954,831	-		RPSI07_RS07370	0.32	-0.2
1,954,846	-		RPSI07_RS07370	0.33	-2.3
1,954,846	-		RPSI07_RS07370	0.33	-2.4
1,954,846	-		RPSI07_RS07370	0.33	-2.0
1,955,031	+		RPSI07_RS07370	0.47	-0.8
1,955,031	+		RPSI07_RS07370	0.47	-0.9
1,955,031	+		RPSI07_RS07370	0.47	-0.7
1,955,031	+		RPSI07_RS07370	0.47	+0.1
1,955,032	-		RPSI07_RS07370	0.47	-3.3
1,955,032	-		RPSI07_RS07370	0.47	+0.1
1,955,032	-		RPSI07_RS07370	0.47	-1.5
1,955,032	-		RPSI07_RS07370	0.47	+0.5
1,955,037	+		RPSI07_RS07370	0.47	-1.4
1,955,037	+		RPSI07_RS07370	0.47	-0.2
1,955,037	+		RPSI07_RS07370	0.47	+0.5
1,955,037	+		RPSI07_RS07370	0.47	-1.1
1,955,037	+		RPSI07_RS07370	0.47	-1.8
1,955,038	-		RPSI07_RS07370	0.48	-1.2
1,955,038	-		RPSI07_RS07370	0.48	-1.3
1,955,038	-		RPSI07_RS07370	0.48	-0.9
1,955,169	+		RPSI07_RS07370	0.58	-0.2
1,955,170	-		RPSI07_RS07370	0.58	-2.1
1,955,170	-		RPSI07_RS07370	0.58	-1.8
1,955,170	-		RPSI07_RS07370	0.58	-0.7
1,955,170	-		RPSI07_RS07370	0.58	-1.3
1,955,170	-		RPSI07_RS07370	0.58	-2.4
1,955,188	-		RPSI07_RS07370	0.59	-2.3
1,955,188	-		RPSI07_RS07370	0.59	-0.9
1,955,188	-		RPSI07_RS07370	0.59	-1.1
1,955,211	+		RPSI07_RS07370	0.61	+0.6
1,955,211	+		RPSI07_RS07370	0.61	-2.2
1,955,211	+		RPSI07_RS07370	0.61	+1.5
1,955,211	+		RPSI07_RS07370	0.61	-0.7
1,955,211	+		RPSI07_RS07370	0.61	+0.5
1,955,211	+		RPSI07_RS07370	0.61	-1.3
1,955,211	+		RPSI07_RS07370	0.61	-2.4
1,955,211	+		RPSI07_RS07370	0.61	-1.8
1,955,211	+		RPSI07_RS07370	0.61	-1.7
1,955,212	-		RPSI07_RS07370	0.61	-1.0
1,955,212	-		RPSI07_RS07370	0.61	-0.3
1,955,212	-		RPSI07_RS07370	0.61	-2.1
1,955,212	-		RPSI07_RS07370	0.61	-3.5
1,955,212	-		RPSI07_RS07370	0.61	-0.7
1,955,283	+		RPSI07_RS07370	0.66	-1.3
1,955,284	-		RPSI07_RS07370	0.66	-2.2
1,955,320	+		RPSI07_RS07370	0.69	-0.6
1,955,322	+		RPSI07_RS07370	0.69	+0.0
1,955,322	+		RPSI07_RS07370	0.69	+1.3
1,955,322	+		RPSI07_RS07370	0.69	-1.3
1,955,322	+		RPSI07_RS07370	0.69	-1.0
1,955,322	+		RPSI07_RS07370	0.69	+0.2
1,955,322	+		RPSI07_RS07370	0.69	-0.2
1,955,322	+		RPSI07_RS07370	0.69	+0.7
1,955,322	+		RPSI07_RS07370	0.69	-0.9
1,955,322	+		RPSI07_RS07370	0.69	-1.0
1,955,322	+		RPSI07_RS07370	0.69	-1.1
1,955,322	+		RPSI07_RS07370	0.69	-1.1
1,955,322	+		RPSI07_RS07370	0.69	-1.0
1,955,322	+		RPSI07_RS07370	0.69	-0.1
1,955,322	+		RPSI07_RS07370	0.69	-0.7
1,955,322	+		RPSI07_RS07370	0.69	-1.9
1,955,322	+		RPSI07_RS07370	0.69	-1.2
1,955,322	+		RPSI07_RS07370	0.69	-1.9
1,955,323	-		RPSI07_RS07370	0.69	-1.3
1,955,323	-		RPSI07_RS07370	0.69	-1.7
1,955,323	-		RPSI07_RS07370	0.69	-0.3
1,955,323	-		RPSI07_RS07370	0.69	-2.7
1,955,323	-		RPSI07_RS07370	0.69	-0.7
1,955,323	-		RPSI07_RS07370	0.69	-0.9
1,955,323	-		RPSI07_RS07370	0.69	-1.5
1,955,323	-		RPSI07_RS07370	0.69	-2.8
1,955,323	-		RPSI07_RS07370	0.69	-0.5
1,955,323	-		RPSI07_RS07370	0.69	-0.1
1,955,323	-		RPSI07_RS07370	0.69	-1.3
1,955,323	-		RPSI07_RS07370	0.69	-2.4
1,955,323	-		RPSI07_RS07370	0.69	-2.7
1,955,323	-		RPSI07_RS07370	0.69	-0.7
1,955,323	-		RPSI07_RS07370	0.69	+0.3
1,955,323	-		RPSI07_RS07370	0.69	-3.9
1,955,323	-				+0.7
1,955,323	-		RPSI07_RS07370	0.69	-3.1
1,955,323	-		RPSI07_RS07370	0.69	+1.9
1,955,323	-		RPSI07_RS07370	0.69	+0.3
1,955,418	+		RPSI07_RS07370	0.77	-2.7
1,955,484	+		RPSI07_RS07370	0.82	-1.0
1,955,485	-		RPSI07_RS07370	0.82	-0.3
1,955,485	-		RPSI07_RS07370	0.82	-0.7
1,955,763	+				-0.7
1,955,764	-				-0.7
1,955,788	+				-0.7
1,955,788	+				+1.8
1,955,788	+				+0.2
1,955,788	+				+0.2
1,955,789	-				-1.3
1,955,789	-				+1.3
1,955,789	-				-0.8
1,955,789	-				-0.6
1,955,789	-				-0.9
1,955,789	-				-1.6
1,955,790	-				+0.1
1,955,790	-				-2.5
1,955,868	-				+0.5
1,955,868	-				-2.5
1,955,868	-				-0.7
1,956,031	+		RPSI07_RS07375	0.21	-1.5
1,956,031	+				+1.5
1,956,031	+		RPSI07_RS07375	0.21	+0.3
1,956,031	+		RPSI07_RS07375	0.21	-0.6
1,956,032	-		RPSI07_RS07375	0.21	-1.9
1,956,032	-		RPSI07_RS07375	0.21	-1.8
1,956,032	-		RPSI07_RS07375	0.21	-2.8
1,956,032	-		RPSI07_RS07375	0.21	-0.1
1,956,032	-		RPSI07_RS07375	0.21	-2.5
1,956,032	-		RPSI07_RS07375	0.21	-1.2
1,956,032	-		RPSI07_RS07375	0.21	-0.7
1,956,202	+		RPSI07_RS07375	0.32	-0.8
1,956,370	+		RPSI07_RS07375	0.43	-0.6
1,956,370	+		RPSI07_RS07375	0.43	-1.3
1,956,475	+		RPSI07_RS07375	0.51	-0.2
1,956,475	+		RPSI07_RS07375	0.51	+1.3
1,956,476	-		RPSI07_RS07375	0.51	-2.2
1,956,521	-		RPSI07_RS07375	0.54	-3.6
1,956,521	-		RPSI07_RS07375	0.54	+0.8
1,956,899	+		RPSI07_RS07375	0.79	+1.0
1,956,899	+		RPSI07_RS07375	0.79	+0.6
1,956,995	-		RPSI07_RS07375	0.86	-0.7
1,957,207	+				+5.0
1,957,207	+				+1.1
1,957,207	+				+0.9
1,957,207	+				+3.2
1,957,208	-				-1.6
1,957,208	-				-2.1
1,957,208	-				-1.6
1,957,408	+		RPSI07_RS07380	0.14	+1.0
1,957,409	-		RPSI07_RS07380	0.14	-0.6
1,957,441	+		RPSI07_RS07380	0.18	+0.7
1,957,465	+		RPSI07_RS07380	0.21	-1.5
1,957,465	+		RPSI07_RS07380	0.21	-0.9
1,957,465	+		RPSI07_RS07380	0.21	-0.1
1,957,465	+		RPSI07_RS07380	0.21	+0.3
1,957,466	-		RPSI07_RS07380	0.21	+0.2
1,957,466	-		RPSI07_RS07380	0.21	-0.2
1,957,489	+		RPSI07_RS07380	0.23	+0.0
1,957,489	+		RPSI07_RS07380	0.23	-0.9
1,957,489	+		RPSI07_RS07380	0.23	+1.6
1,957,489	+		RPSI07_RS07380	0.23	+0.9
1,957,489	+		RPSI07_RS07380	0.23	+0.6
1,957,489	+		RPSI07_RS07380	0.23	-0.6
1,957,489	+		RPSI07_RS07380	0.23	-0.3
1,957,489	+		RPSI07_RS07380	0.23	-0.3
1,957,490	-		RPSI07_RS07380	0.23	-0.5
1,957,597	+		RPSI07_RS07380	0.35	+0.5
1,957,597	+		RPSI07_RS07380	0.35	+0.3
1,957,597	+		RPSI07_RS07380	0.35	+0.8
1,957,597	+		RPSI07_RS07380	0.35	+2.0
1,957,597	+		RPSI07_RS07380	0.35	+0.0
1,957,598	-		RPSI07_RS07380	0.35	-1.1
1,957,645	+		RPSI07_RS07380	0.40	+0.3
1,957,646	-		RPSI07_RS07380	0.40	+0.7
1,957,646	-		RPSI07_RS07380	0.40	+0.9
1,957,678	+		RPSI07_RS07380	0.44	+2.3
1,957,678	+		RPSI07_RS07380	0.44	+2.7
1,957,678	+		RPSI07_RS07380	0.44	+2.0
1,957,678	+		RPSI07_RS07380	0.44	+1.5
1,957,678	+		RPSI07_RS07380	0.44	+1.7
1,957,678	+		RPSI07_RS07380	0.44	+3.1
1,957,679	-		RPSI07_RS07380	0.44	+0.9
1,957,679	-		RPSI07_RS07380	0.44	+0.9
1,957,679	-		RPSI07_RS07380	0.44	+0.6
1,957,679	-		RPSI07_RS07380	0.44	-1.1
1,957,702	+		RPSI07_RS07380	0.47	-0.7
1,957,702	+		RPSI07_RS07380	0.47	-0.9
1,957,702	+		RPSI07_RS07380	0.47	+0.6
1,957,702	+		RPSI07_RS07380	0.47	-1.0
1,957,702	+		RPSI07_RS07380	0.47	-0.0
1,957,702	+		RPSI07_RS07380	0.47	-0.9
1,957,702	+		RPSI07_RS07380	0.47	-1.2
1,957,702	+		RPSI07_RS07380	0.47	+0.4
1,957,702	+		RPSI07_RS07380	0.47	-1.5
1,957,702	+		RPSI07_RS07380	0.47	-0.9
1,957,703	-		RPSI07_RS07380	0.47	-0.6
1,957,703	-		RPSI07_RS07380	0.47	+0.3
1,957,832	+		RPSI07_RS07380	0.61	+0.1
1,957,832	+		RPSI07_RS07380	0.61	-0.8
1,957,832	+		RPSI07_RS07380	0.61	-1.4
1,957,833	-		RPSI07_RS07380	0.61	+0.5
1,958,051	+		RPSI07_RS07380	0.85	+2.3
1,958,051	+		RPSI07_RS07380	0.85	+3.0
1,958,129	+				+4.8
1,958,189	+				+3.2