Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS04685 and RPSI07_RS04690 are separated by 495 nucleotides RPSI07_RS04690 and RPSI07_RS04695 are separated by 969 nucleotides
RPSI07_RS04685: RPSI07_RS04685 - type III effector, at 1,266,718 to 1,268,607
_RS04685
RPSI07_RS04690: RPSI07_RS04690 - type III effector, at 1,269,103 to 1,270,875
_RS04690
RPSI07_RS04695: RPSI07_RS04695 - N-acetylmuramoyl-L-alanine amidase, at 1,271,845 to 1,272,876
_RS04695
Position (kb) 1269
1270
1271 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1268.259 kb on - strand, within RPSI07_RS04685 at 1268.317 kb on + strand, within RPSI07_RS04685 at 1268.317 kb on + strand, within RPSI07_RS04685 at 1268.318 kb on - strand, within RPSI07_RS04685 at 1268.318 kb on - strand, within RPSI07_RS04685 at 1268.341 kb on + strand, within RPSI07_RS04685 at 1268.390 kb on + strand, within RPSI07_RS04685 at 1268.410 kb on + strand, within RPSI07_RS04685 at 1268.410 kb on + strand, within RPSI07_RS04685 at 1268.410 kb on + strand, within RPSI07_RS04685 at 1268.410 kb on + strand, within RPSI07_RS04685 at 1268.410 kb on + strand, within RPSI07_RS04685 at 1268.411 kb on - strand, within RPSI07_RS04685 at 1268.411 kb on - strand, within RPSI07_RS04685 at 1268.411 kb on - strand, within RPSI07_RS04685 at 1268.432 kb on - strand at 1268.432 kb on - strand at 1268.674 kb on + strand at 1268.674 kb on + strand at 1268.674 kb on + strand at 1268.674 kb on + strand at 1268.675 kb on - strand at 1268.675 kb on - strand at 1268.675 kb on - strand at 1268.675 kb on - strand at 1268.682 kb on + strand at 1268.682 kb on + strand at 1268.683 kb on - strand at 1268.684 kb on + strand at 1268.685 kb on - strand at 1268.685 kb on - strand at 1268.685 kb on - strand at 1268.752 kb on + strand at 1268.752 kb on + strand at 1268.752 kb on + strand at 1268.753 kb on - strand at 1268.753 kb on - strand at 1268.785 kb on + strand at 1268.785 kb on + strand at 1268.785 kb on + strand at 1268.785 kb on + strand at 1268.786 kb on - strand at 1268.786 kb on - strand at 1268.872 kb on + strand at 1268.973 kb on + strand at 1269.297 kb on + strand, within RPSI07_RS04690 at 1269.298 kb on - strand, within RPSI07_RS04690 at 1269.298 kb on - strand, within RPSI07_RS04690 at 1269.298 kb on - strand, within RPSI07_RS04690 at 1269.341 kb on + strand, within RPSI07_RS04690 at 1269.341 kb on + strand, within RPSI07_RS04690 at 1269.341 kb on + strand, within RPSI07_RS04690 at 1269.342 kb on - strand, within RPSI07_RS04690 at 1269.342 kb on - strand, within RPSI07_RS04690 at 1269.342 kb on - strand, within RPSI07_RS04690 at 1269.342 kb on - strand, within RPSI07_RS04690 at 1269.624 kb on + strand, within RPSI07_RS04690 at 1269.624 kb on + strand, within RPSI07_RS04690 at 1269.624 kb on + strand, within RPSI07_RS04690 at 1269.625 kb on - strand, within RPSI07_RS04690 at 1269.625 kb on - strand, within RPSI07_RS04690 at 1270.517 kb on + strand, within RPSI07_RS04690 at 1270.576 kb on + strand, within RPSI07_RS04690 at 1270.576 kb on + strand, within RPSI07_RS04690 at 1270.576 kb on + strand, within RPSI07_RS04690 at 1270.576 kb on + strand, within RPSI07_RS04690 at 1270.576 kb on + strand, within RPSI07_RS04690 at 1270.577 kb on - strand, within RPSI07_RS04690 at 1270.577 kb on - strand, within RPSI07_RS04690 at 1270.577 kb on - strand, within RPSI07_RS04690 at 1270.577 kb on - strand, within RPSI07_RS04690 at 1270.641 kb on + strand, within RPSI07_RS04690 at 1270.650 kb on - strand, within RPSI07_RS04690 at 1270.667 kb on + strand, within RPSI07_RS04690 at 1270.669 kb on + strand, within RPSI07_RS04690 at 1270.669 kb on + strand, within RPSI07_RS04690 at 1270.669 kb on + strand, within RPSI07_RS04690 at 1270.669 kb on + strand, within RPSI07_RS04690 at 1270.669 kb on + strand, within RPSI07_RS04690 at 1270.669 kb on + strand, within RPSI07_RS04690 at 1270.669 kb on + strand, within RPSI07_RS04690 at 1270.670 kb on - strand, within RPSI07_RS04690 at 1270.670 kb on - strand, within RPSI07_RS04690 at 1270.670 kb on - strand, within RPSI07_RS04690 at 1270.670 kb on - strand, within RPSI07_RS04690 at 1270.670 kb on - strand, within RPSI07_RS04690 at 1270.670 kb on - strand, within RPSI07_RS04690 at 1270.670 kb on - strand, within RPSI07_RS04690 at 1270.670 kb on - strand, within RPSI07_RS04690 at 1270.670 kb on - strand, within RPSI07_RS04690 at 1270.670 kb on - strand, within RPSI07_RS04690 at 1270.670 kb on - strand, within RPSI07_RS04690 at 1270.791 kb on + strand at 1270.791 kb on + strand at 1270.791 kb on + strand at 1270.792 kb on - strand at 1270.792 kb on - strand at 1270.847 kb on + strand at 1270.847 kb on + strand at 1270.895 kb on - strand at 1271.276 kb on + strand at 1271.276 kb on + strand at 1271.278 kb on + strand at 1271.278 kb on + strand at 1271.278 kb on + strand at 1271.278 kb on + strand at 1271.278 kb on + strand at 1271.278 kb on + strand at 1271.278 kb on + strand at 1271.278 kb on + strand at 1271.278 kb on + strand at 1271.278 kb on + strand at 1271.278 kb on + strand at 1271.279 kb on - strand at 1271.279 kb on - strand at 1271.279 kb on - strand at 1271.279 kb on - strand at 1271.279 kb on - strand at 1271.279 kb on - strand at 1271.279 kb on - strand at 1271.392 kb on + strand at 1271.392 kb on + strand at 1271.578 kb on + strand at 1271.578 kb on + strand at 1271.578 kb on + strand at 1271.578 kb on + strand at 1271.579 kb on - strand at 1271.579 kb on - strand at 1271.579 kb on - strand at 1271.752 kb on + strand at 1271.752 kb on + strand at 1271.752 kb on + strand at 1271.752 kb on + strand at 1271.753 kb on - strand at 1271.753 kb on - strand at 1271.754 kb on - strand at 1271.831 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,268,259 - RPSI07_RS04685 0.82 +0.4 1,268,317 + RPSI07_RS04685 0.85 -0.6 1,268,317 + RPSI07_RS04685 0.85 +1.3 1,268,318 - RPSI07_RS04685 0.85 +1.0 1,268,318 - RPSI07_RS04685 0.85 -1.9 1,268,341 + RPSI07_RS04685 0.86 -0.4 1,268,390 + RPSI07_RS04685 0.88 -1.1 1,268,410 + RPSI07_RS04685 0.90 +0.7 1,268,410 + RPSI07_RS04685 0.90 -0.9 1,268,410 + RPSI07_RS04685 0.90 -0.1 1,268,410 + RPSI07_RS04685 0.90 +0.7 1,268,410 + RPSI07_RS04685 0.90 -2.3 1,268,411 - RPSI07_RS04685 0.90 +2.1 1,268,411 - RPSI07_RS04685 0.90 -0.1 1,268,411 - RPSI07_RS04685 0.90 -0.3 1,268,432 - +1.9 1,268,432 - +0.1 1,268,674 + -1.9 1,268,674 + +1.3 1,268,674 + -2.7 1,268,674 + +0.5 1,268,675 - -0.3 1,268,675 - +0.8 1,268,675 - -1.7 1,268,675 - +0.0 1,268,682 + -0.5 1,268,682 + -1.0 1,268,683 - -0.1 1,268,684 + +0.2 1,268,685 - -0.1 1,268,685 - +0.9 1,268,685 - -0.5 1,268,752 + -0.7 1,268,752 + +0.2 1,268,752 + -0.1 1,268,753 - +0.1 1,268,753 - +1.0 1,268,785 + +0.2 1,268,785 + -1.0 1,268,785 + +1.0 1,268,785 + +0.0 1,268,786 - -0.4 1,268,786 - -1.1 1,268,872 + +0.1 1,268,973 + +0.4 1,269,297 + RPSI07_RS04690 0.11 +0.1 1,269,298 - RPSI07_RS04690 0.11 -0.3 1,269,298 - RPSI07_RS04690 0.11 -0.8 1,269,298 - RPSI07_RS04690 0.11 -1.5 1,269,341 + RPSI07_RS04690 0.13 -1.0 1,269,341 + RPSI07_RS04690 0.13 +0.1 1,269,341 + RPSI07_RS04690 0.13 -0.4 1,269,342 - RPSI07_RS04690 0.13 -1.2 1,269,342 - RPSI07_RS04690 0.13 -0.4 1,269,342 - RPSI07_RS04690 0.13 -1.6 1,269,342 - RPSI07_RS04690 0.13 -1.0 1,269,624 + RPSI07_RS04690 0.29 +0.5 1,269,624 + RPSI07_RS04690 0.29 +0.0 1,269,624 + RPSI07_RS04690 0.29 +0.1 1,269,625 - RPSI07_RS04690 0.29 +0.0 1,269,625 - RPSI07_RS04690 0.29 +0.2 1,270,517 + RPSI07_RS04690 0.80 -1.1 1,270,576 + RPSI07_RS04690 0.83 -0.8 1,270,576 + RPSI07_RS04690 0.83 -0.7 1,270,576 + RPSI07_RS04690 0.83 -1.6 1,270,576 + RPSI07_RS04690 0.83 -0.6 1,270,576 + RPSI07_RS04690 0.83 +0.9 1,270,577 - RPSI07_RS04690 0.83 +0.1 1,270,577 - RPSI07_RS04690 0.83 -0.8 1,270,577 - RPSI07_RS04690 0.83 +2.3 1,270,577 - RPSI07_RS04690 0.83 +1.1 1,270,641 + RPSI07_RS04690 0.87 -0.8 1,270,650 - RPSI07_RS04690 0.87 -1.3 1,270,667 + RPSI07_RS04690 0.88 -0.7 1,270,669 + RPSI07_RS04690 0.88 -1.3 1,270,669 + RPSI07_RS04690 0.88 +0.6 1,270,669 + RPSI07_RS04690 0.88 +0.4 1,270,669 + RPSI07_RS04690 0.88 -0.6 1,270,669 + RPSI07_RS04690 0.88 +0.5 1,270,669 + RPSI07_RS04690 0.88 -0.6 1,270,669 + RPSI07_RS04690 0.88 +1.9 1,270,670 - RPSI07_RS04690 0.88 -1.0 1,270,670 - RPSI07_RS04690 0.88 -0.0 1,270,670 - RPSI07_RS04690 0.88 -0.9 1,270,670 - RPSI07_RS04690 0.88 -1.4 1,270,670 - RPSI07_RS04690 0.88 -0.1 1,270,670 - RPSI07_RS04690 0.88 -1.7 1,270,670 - RPSI07_RS04690 0.88 +0.2 1,270,670 - RPSI07_RS04690 0.88 -1.1 1,270,670 - RPSI07_RS04690 0.88 -1.3 1,270,670 - RPSI07_RS04690 0.88 -0.3 1,270,670 - RPSI07_RS04690 0.88 -1.1 1,270,791 + +1.2 1,270,791 + +0.3 1,270,791 + -1.1 1,270,792 - +0.4 1,270,792 - +0.1 1,270,847 + -0.4 1,270,847 + +0.4 1,270,895 - -1.2 1,271,276 + +0.9 1,271,276 + +2.2 1,271,278 + -0.2 1,271,278 + +1.3 1,271,278 + -1.8 1,271,278 + +0.9 1,271,278 + +0.7 1,271,278 + -0.1 1,271,278 + +0.2 1,271,278 + -0.5 1,271,278 + +0.2 1,271,278 + -0.7 1,271,278 + +0.1 1,271,279 - +1.1 1,271,279 - -0.3 1,271,279 - -1.3 1,271,279 - -0.2 1,271,279 - -0.3 1,271,279 - -0.9 1,271,279 - -1.2 1,271,392 + -0.6 1,271,392 + +1.6 1,271,578 + +0.2 1,271,578 + -0.2 1,271,578 + +0.6 1,271,578 + -1.3 1,271,579 - -0.1 1,271,579 - +0.0 1,271,579 - -1.5 1,271,752 + +0.5 1,271,752 + -2.3 1,271,752 + +0.7 1,271,752 + +0.4 1,271,753 - -0.4 1,271,753 - +1.8 1,271,754 - -1.1 1,271,831 + -1.4
Or see this region's nucleotide sequence