Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS31025

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS21225 and PFLU_RS31025 are separated by 330 nucleotidesPFLU_RS31025 and PFLU_RS21235 are separated by 54 nucleotides PFLU_RS21225: PFLU_RS21225 - SDR family oxidoreductase, at 4,775,593 to 4,776,408 _RS21225 PFLU_RS31025: PFLU_RS31025 - DUF3309 domain-containing protein, at 4,776,739 to 4,776,891 _RS31025 PFLU_RS21235: PFLU_RS21235 - LTA synthase family protein, at 4,776,946 to 4,779,033 _RS21235 Position (kb) 4776 4777Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4775.747 kb on + strand, within PFLU_RS21225at 4775.747 kb on + strand, within PFLU_RS21225at 4775.747 kb on + strand, within PFLU_RS21225at 4775.747 kb on + strand, within PFLU_RS21225at 4775.747 kb on + strand, within PFLU_RS21225at 4775.747 kb on + strand, within PFLU_RS21225at 4775.747 kb on + strand, within PFLU_RS21225at 4775.747 kb on + strand, within PFLU_RS21225at 4775.747 kb on + strand, within PFLU_RS21225at 4775.747 kb on + strand, within PFLU_RS21225at 4775.747 kb on + strand, within PFLU_RS21225at 4775.747 kb on + strand, within PFLU_RS21225at 4775.747 kb on + strand, within PFLU_RS21225at 4775.748 kb on - strand, within PFLU_RS21225at 4775.748 kb on - strand, within PFLU_RS21225at 4775.748 kb on - strand, within PFLU_RS21225at 4775.748 kb on - strand, within PFLU_RS21225at 4775.748 kb on - strand, within PFLU_RS21225at 4775.748 kb on - strand, within PFLU_RS21225at 4775.748 kb on - strand, within PFLU_RS21225at 4775.748 kb on - strand, within PFLU_RS21225at 4775.748 kb on - strand, within PFLU_RS21225at 4775.748 kb on - strand, within PFLU_RS21225at 4775.753 kb on + strand, within PFLU_RS21225at 4775.753 kb on + strand, within PFLU_RS21225at 4775.753 kb on + strand, within PFLU_RS21225at 4775.753 kb on + strand, within PFLU_RS21225at 4775.754 kb on - strand, within PFLU_RS21225at 4775.754 kb on - strand, within PFLU_RS21225at 4775.754 kb on - strand, within PFLU_RS21225at 4775.754 kb on - strand, within PFLU_RS21225at 4775.754 kb on - strand, within PFLU_RS21225at 4775.935 kb on + strand, within PFLU_RS21225at 4775.936 kb on - strand, within PFLU_RS21225at 4775.960 kb on + strand, within PFLU_RS21225at 4775.960 kb on + strand, within PFLU_RS21225at 4775.960 kb on + strand, within PFLU_RS21225at 4775.960 kb on + strand, within PFLU_RS21225at 4775.961 kb on - strand, within PFLU_RS21225at 4775.961 kb on - strand, within PFLU_RS21225at 4775.961 kb on - strand, within PFLU_RS21225at 4775.961 kb on - strand, within PFLU_RS21225at 4775.961 kb on - strand, within PFLU_RS21225at 4776.185 kb on - strand, within PFLU_RS21225at 4776.185 kb on - strand, within PFLU_RS21225at 4776.222 kb on - strand, within PFLU_RS21225at 4776.451 kb on + strandat 4776.451 kb on + strandat 4776.451 kb on + strandat 4776.452 kb on - strandat 4776.452 kb on - strandat 4776.540 kb on + strandat 4776.540 kb on + strandat 4776.541 kb on - strandat 4776.587 kb on - strandat 4776.587 kb on - strandat 4776.595 kb on + strandat 4776.596 kb on - strandat 4776.677 kb on + strandat 4776.678 kb on - strandat 4776.678 kb on - strandat 4776.696 kb on + strandat 4776.697 kb on - strandat 4776.701 kb on - strandat 4776.759 kb on + strand, within PFLU_RS31025at 4776.759 kb on + strand, within PFLU_RS31025at 4776.759 kb on + strand, within PFLU_RS31025at 4776.760 kb on - strand, within PFLU_RS31025at 4776.821 kb on - strand, within PFLU_RS31025at 4776.848 kb on + strand, within PFLU_RS31025at 4776.848 kb on + strand, within PFLU_RS31025at 4776.888 kb on - strandat 4776.888 kb on - strandat 4776.889 kb on + strandat 4776.889 kb on + strandat 4776.890 kb on - strandat 4776.890 kb on - strandat 4776.918 kb on + strandat 4776.919 kb on - strandat 4776.948 kb on - strandat 4776.948 kb on - strandat 4777.129 kb on + strandat 4777.129 kb on + strandat 4777.135 kb on + strandat 4777.135 kb on + strandat 4777.135 kb on + strandat 4777.136 kb on - strandat 4777.311 kb on + strand, within PFLU_RS21235at 4777.311 kb on + strand, within PFLU_RS21235at 4777.457 kb on + strand, within PFLU_RS21235at 4777.458 kb on - strand, within PFLU_RS21235at 4777.458 kb on - strand, within PFLU_RS21235at 4777.587 kb on - strand, within PFLU_RS21235at 4777.622 kb on + strand, within PFLU_RS21235at 4777.622 kb on + strand, within PFLU_RS21235at 4777.622 kb on + strand, within PFLU_RS21235at 4777.622 kb on + strand, within PFLU_RS21235at 4777.808 kb on + strand, within PFLU_RS21235at 4777.808 kb on + strand, within PFLU_RS21235at 4777.808 kb on + strand, within PFLU_RS21235at 4777.808 kb on + strand, within PFLU_RS21235at 4777.808 kb on + strand, within PFLU_RS21235at 4777.809 kb on - strand, within PFLU_RS21235at 4777.809 kb on - strand, within PFLU_RS21235at 4777.809 kb on - strand, within PFLU_RS21235at 4777.814 kb on + strand, within PFLU_RS21235at 4777.814 kb on + strand, within PFLU_RS21235at 4777.814 kb on + strand, within PFLU_RS21235at 4777.814 kb on + strand, within PFLU_RS21235at 4777.814 kb on + strand, within PFLU_RS21235at 4777.814 kb on + strand, within PFLU_RS21235at 4777.814 kb on + strand, within PFLU_RS21235at 4777.814 kb on + strand, within PFLU_RS21235at 4777.814 kb on + strand, within PFLU_RS21235at 4777.814 kb on + strand, within PFLU_RS21235at 4777.814 kb on + strand, within PFLU_RS21235at 4777.814 kb on + strand, within PFLU_RS21235at 4777.814 kb on + strand, within PFLU_RS21235at 4777.814 kb on + strand, within PFLU_RS21235at 4777.814 kb on + strand, within PFLU_RS21235at 4777.814 kb on + strand, within PFLU_RS21235at 4777.814 kb on + strand, within PFLU_RS21235at 4777.814 kb on + strand, within PFLU_RS21235at 4777.814 kb on + strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235at 4777.815 kb on - strand, within PFLU_RS21235

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,775,747 + PFLU_RS21225 0.19 +1.1
4,775,747 + PFLU_RS21225 0.19 -2.2
4,775,747 + PFLU_RS21225 0.19 -0.6
4,775,747 + PFLU_RS21225 0.19 +0.0
4,775,747 + PFLU_RS21225 0.19 -2.5
4,775,747 + PFLU_RS21225 0.19 -0.7
4,775,747 + PFLU_RS21225 0.19 -0.5
4,775,747 + PFLU_RS21225 0.19 +1.3
4,775,747 + PFLU_RS21225 0.19 -2.4
4,775,747 + PFLU_RS21225 0.19 -1.3
4,775,747 + PFLU_RS21225 0.19 -1.4
4,775,747 + PFLU_RS21225 0.19 +0.4
4,775,747 + PFLU_RS21225 0.19 -0.0
4,775,748 - PFLU_RS21225 0.19 +3.1
4,775,748 - PFLU_RS21225 0.19 +0.6
4,775,748 - PFLU_RS21225 0.19 -0.6
4,775,748 - PFLU_RS21225 0.19 -2.2
4,775,748 - PFLU_RS21225 0.19 -1.7
4,775,748 - PFLU_RS21225 0.19 -2.1
4,775,748 - PFLU_RS21225 0.19 +1.0
4,775,748 - PFLU_RS21225 0.19 +1.0
4,775,748 - PFLU_RS21225 0.19 +0.7
4,775,748 - PFLU_RS21225 0.19 +3.7
4,775,753 + PFLU_RS21225 0.20 -2.2
4,775,753 + PFLU_RS21225 0.20 +1.1
4,775,753 + PFLU_RS21225 0.20 -0.0
4,775,753 + PFLU_RS21225 0.20 -2.4
4,775,754 - PFLU_RS21225 0.20 +1.2
4,775,754 - PFLU_RS21225 0.20 +0.9
4,775,754 - PFLU_RS21225 0.20 -1.2
4,775,754 - PFLU_RS21225 0.20 -1.0
4,775,754 - PFLU_RS21225 0.20 +1.6
4,775,935 + PFLU_RS21225 0.42 -0.9
4,775,936 - PFLU_RS21225 0.42 +0.6
4,775,960 + PFLU_RS21225 0.45 +1.3
4,775,960 + PFLU_RS21225 0.45 -1.8
4,775,960 + PFLU_RS21225 0.45 -0.4
4,775,960 + PFLU_RS21225 0.45 +3.0
4,775,961 - PFLU_RS21225 0.45 -2.0
4,775,961 - PFLU_RS21225 0.45 -1.1
4,775,961 - PFLU_RS21225 0.45 -1.0
4,775,961 - PFLU_RS21225 0.45 -0.5
4,775,961 - PFLU_RS21225 0.45 -3.1
4,776,185 - PFLU_RS21225 0.73 +2.3
4,776,185 - PFLU_RS21225 0.73 +0.4
4,776,222 - PFLU_RS21225 0.77 +1.3
4,776,451 + -0.8
4,776,451 + -1.4
4,776,451 + -0.7
4,776,452 - +2.4
4,776,452 - -1.4
4,776,540 + -1.2
4,776,540 + +0.5
4,776,541 - +0.7
4,776,587 - -1.5
4,776,587 - -0.4
4,776,595 + +0.3
4,776,596 - -1.7
4,776,677 + +2.0
4,776,678 - -1.9
4,776,678 - -1.0
4,776,696 + +0.2
4,776,697 - -1.0
4,776,701 - +1.0
4,776,759 + PFLU_RS31025 0.13 -1.2
4,776,759 + PFLU_RS31025 0.13 -1.9
4,776,759 + PFLU_RS31025 0.13 +0.1
4,776,760 - PFLU_RS31025 0.14 +0.0
4,776,821 - PFLU_RS31025 0.54 +0.2
4,776,848 + PFLU_RS31025 0.71 +1.6
4,776,848 + PFLU_RS31025 0.71 +1.3
4,776,888 - +1.4
4,776,888 - -2.0
4,776,889 + -1.5
4,776,889 + -0.6
4,776,890 - +1.1
4,776,890 - +0.1
4,776,918 + +1.2
4,776,919 - +0.8
4,776,948 - -0.3
4,776,948 - +0.0
4,777,129 + -1.9
4,777,129 + -0.0
4,777,135 + +0.4
4,777,135 + -0.9
4,777,135 + -1.2
4,777,136 - -0.3
4,777,311 + PFLU_RS21235 0.17 -0.5
4,777,311 + PFLU_RS21235 0.17 -1.3
4,777,457 + PFLU_RS21235 0.24 +0.6
4,777,458 - PFLU_RS21235 0.25 +0.6
4,777,458 - PFLU_RS21235 0.25 -2.7
4,777,587 - PFLU_RS21235 0.31 +2.1
4,777,622 + PFLU_RS21235 0.32 +0.9
4,777,622 + PFLU_RS21235 0.32 -0.1
4,777,622 + PFLU_RS21235 0.32 -2.2
4,777,622 + PFLU_RS21235 0.32 -2.1
4,777,808 + PFLU_RS21235 0.41 -2.0
4,777,808 + PFLU_RS21235 0.41 +0.7
4,777,808 + PFLU_RS21235 0.41 -0.0
4,777,808 + PFLU_RS21235 0.41 -1.7
4,777,808 + PFLU_RS21235 0.41 +0.3
4,777,809 - PFLU_RS21235 0.41 -0.6
4,777,809 - PFLU_RS21235 0.41 -0.0
4,777,809 - PFLU_RS21235 0.41 +0.4
4,777,814 + PFLU_RS21235 0.42 +0.6
4,777,814 + PFLU_RS21235 0.42 +0.5
4,777,814 + PFLU_RS21235 0.42 -0.7
4,777,814 + PFLU_RS21235 0.42 +0.7
4,777,814 + PFLU_RS21235 0.42 +1.9
4,777,814 + PFLU_RS21235 0.42 -0.4
4,777,814 + PFLU_RS21235 0.42 +2.1
4,777,814 + PFLU_RS21235 0.42 +1.0
4,777,814 + PFLU_RS21235 0.42 +2.1
4,777,814 + PFLU_RS21235 0.42 +1.0
4,777,814 + PFLU_RS21235 0.42 +0.8
4,777,814 + PFLU_RS21235 0.42 +0.8
4,777,814 + PFLU_RS21235 0.42 +0.7
4,777,814 + PFLU_RS21235 0.42 -0.3
4,777,814 + PFLU_RS21235 0.42 -1.3
4,777,814 + PFLU_RS21235 0.42 +2.7
4,777,814 + PFLU_RS21235 0.42 +0.5
4,777,814 + PFLU_RS21235 0.42 -3.5
4,777,814 + PFLU_RS21235 0.42 -0.7
4,777,815 - PFLU_RS21235 0.42 +2.0
4,777,815 - PFLU_RS21235 0.42 -0.6
4,777,815 - PFLU_RS21235 0.42 +1.1
4,777,815 - PFLU_RS21235 0.42 +1.1
4,777,815 - PFLU_RS21235 0.42 +0.0
4,777,815 - PFLU_RS21235 0.42 -1.0
4,777,815 - PFLU_RS21235 0.42 -0.8
4,777,815 - PFLU_RS21235 0.42 +0.9
4,777,815 - PFLU_RS21235 0.42 +0.2
4,777,815 - PFLU_RS21235 0.42 +1.9
4,777,815 - PFLU_RS21235 0.42 -1.9
4,777,815 - PFLU_RS21235 0.42 +0.9
4,777,815 - PFLU_RS21235 0.42 -2.7
4,777,815 - PFLU_RS21235 0.42 +0.9
4,777,815 - PFLU_RS21235 0.42 +0.6
4,777,815 - PFLU_RS21235 0.42 -3.3
4,777,815 - PFLU_RS21235 0.42 -0.6
4,777,815 - PFLU_RS21235 0.42 +0.5
4,777,815 - PFLU_RS21235 0.42 +1.1
4,777,815 - PFLU_RS21235 0.42 -0.6
4,777,815 - PFLU_RS21235 0.42 -0.5
4,777,815 - PFLU_RS21235 0.42 +0.5
4,777,815 - PFLU_RS21235 0.42 -0.6
4,777,815 - PFLU_RS21235 0.42 -1.9

Or see this region's nucleotide sequence