Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS25730 and PFLU_RS25735 are separated by 22 nucleotides PFLU_RS25735 and PFLU_RS31095 are separated by 459 nucleotides PFLU_RS31095 and PFLU_RS25740 are separated by 64 nucleotides
PFLU_RS25730: PFLU_RS25730 - PAS domain S-box protein, at 5,742,469 to 5,745,417
_RS25730
PFLU_RS25735: PFLU_RS25735 - sigma-54-dependent Fis family transcriptional regulator, at 5,745,440 to 5,746,870
_RS25735
PFLU_RS31095: PFLU_RS31095 - hypothetical protein, at 5,747,330 to 5,747,515
_RS31095
PFLU_RS25740: PFLU_RS25740 - polynucleotide adenylyltransferase PcnB, at 5,747,580 to 5,748,983
_RS25740
Position (kb) 5745
5746
5747 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5744.496 kb on + strand, within PFLU_RS25730 at 5744.496 kb on + strand, within PFLU_RS25730 at 5744.496 kb on + strand, within PFLU_RS25730 at 5744.497 kb on - strand, within PFLU_RS25730 at 5744.497 kb on - strand, within PFLU_RS25730 at 5744.497 kb on - strand, within PFLU_RS25730 at 5744.497 kb on - strand, within PFLU_RS25730 at 5744.643 kb on + strand, within PFLU_RS25730 at 5744.660 kb on + strand, within PFLU_RS25730 at 5745.014 kb on + strand, within PFLU_RS25730 at 5745.014 kb on + strand, within PFLU_RS25730 at 5745.014 kb on + strand, within PFLU_RS25730 at 5745.014 kb on + strand, within PFLU_RS25730 at 5745.014 kb on + strand, within PFLU_RS25730 at 5745.015 kb on - strand, within PFLU_RS25730 at 5745.015 kb on - strand, within PFLU_RS25730 at 5745.015 kb on - strand, within PFLU_RS25730 at 5745.015 kb on - strand, within PFLU_RS25730 at 5745.015 kb on - strand, within PFLU_RS25730 at 5745.162 kb on + strand at 5745.162 kb on + strand at 5745.162 kb on + strand at 5745.162 kb on + strand at 5745.162 kb on + strand at 5745.162 kb on + strand at 5745.162 kb on + strand at 5745.162 kb on + strand at 5745.162 kb on + strand at 5745.163 kb on - strand at 5745.163 kb on - strand at 5745.163 kb on - strand at 5745.192 kb on + strand at 5745.192 kb on + strand at 5745.193 kb on - strand at 5745.198 kb on + strand at 5745.199 kb on - strand at 5745.264 kb on + strand at 5745.289 kb on + strand at 5745.290 kb on - strand at 5745.311 kb on - strand at 5745.516 kb on - strand at 5745.671 kb on + strand, within PFLU_RS25735 at 5745.671 kb on + strand, within PFLU_RS25735 at 5745.672 kb on - strand, within PFLU_RS25735 at 5745.672 kb on - strand, within PFLU_RS25735 at 5745.672 kb on - strand, within PFLU_RS25735 at 5745.723 kb on - strand, within PFLU_RS25735 at 5745.723 kb on - strand, within PFLU_RS25735 at 5745.723 kb on - strand, within PFLU_RS25735 at 5745.723 kb on - strand, within PFLU_RS25735 at 5745.723 kb on - strand, within PFLU_RS25735 at 5745.723 kb on - strand, within PFLU_RS25735 at 5745.911 kb on + strand, within PFLU_RS25735 at 5745.911 kb on + strand, within PFLU_RS25735 at 5745.912 kb on - strand, within PFLU_RS25735 at 5745.912 kb on - strand, within PFLU_RS25735 at 5745.912 kb on - strand, within PFLU_RS25735 at 5745.912 kb on - strand, within PFLU_RS25735 at 5745.912 kb on - strand, within PFLU_RS25735 at 5745.912 kb on - strand, within PFLU_RS25735 at 5745.931 kb on - strand, within PFLU_RS25735 at 5745.931 kb on - strand, within PFLU_RS25735 at 5745.951 kb on + strand, within PFLU_RS25735 at 5745.951 kb on + strand, within PFLU_RS25735 at 5745.951 kb on + strand, within PFLU_RS25735 at 5745.951 kb on + strand, within PFLU_RS25735 at 5745.951 kb on + strand, within PFLU_RS25735 at 5745.951 kb on + strand, within PFLU_RS25735 at 5745.951 kb on + strand, within PFLU_RS25735 at 5745.951 kb on + strand, within PFLU_RS25735 at 5745.951 kb on + strand, within PFLU_RS25735 at 5745.951 kb on + strand, within PFLU_RS25735 at 5745.952 kb on - strand, within PFLU_RS25735 at 5745.952 kb on - strand, within PFLU_RS25735 at 5745.952 kb on - strand, within PFLU_RS25735 at 5745.952 kb on - strand, within PFLU_RS25735 at 5745.952 kb on - strand, within PFLU_RS25735 at 5745.952 kb on - strand, within PFLU_RS25735 at 5745.952 kb on - strand, within PFLU_RS25735 at 5745.952 kb on - strand, within PFLU_RS25735 at 5745.952 kb on - strand, within PFLU_RS25735 at 5745.952 kb on - strand, within PFLU_RS25735 at 5745.952 kb on - strand, within PFLU_RS25735 at 5745.952 kb on - strand, within PFLU_RS25735 at 5746.227 kb on + strand, within PFLU_RS25735 at 5746.228 kb on - strand, within PFLU_RS25735 at 5746.251 kb on + strand, within PFLU_RS25735 at 5746.352 kb on + strand, within PFLU_RS25735 at 5746.352 kb on + strand, within PFLU_RS25735 at 5746.352 kb on + strand, within PFLU_RS25735 at 5746.352 kb on + strand, within PFLU_RS25735 at 5746.352 kb on + strand, within PFLU_RS25735 at 5746.352 kb on + strand, within PFLU_RS25735 at 5746.352 kb on + strand, within PFLU_RS25735 at 5746.352 kb on + strand, within PFLU_RS25735 at 5746.352 kb on + strand, within PFLU_RS25735 at 5746.352 kb on + strand, within PFLU_RS25735 at 5746.352 kb on + strand, within PFLU_RS25735 at 5746.353 kb on - strand, within PFLU_RS25735 at 5746.353 kb on - strand, within PFLU_RS25735 at 5746.353 kb on - strand, within PFLU_RS25735 at 5746.353 kb on - strand, within PFLU_RS25735 at 5746.356 kb on - strand, within PFLU_RS25735 at 5746.511 kb on + strand, within PFLU_RS25735 at 5746.512 kb on - strand, within PFLU_RS25735 at 5746.539 kb on + strand, within PFLU_RS25735 at 5746.540 kb on - strand, within PFLU_RS25735 at 5746.721 kb on + strand, within PFLU_RS25735 at 5746.721 kb on + strand, within PFLU_RS25735 at 5746.721 kb on + strand, within PFLU_RS25735 at 5746.721 kb on + strand, within PFLU_RS25735 at 5746.721 kb on + strand, within PFLU_RS25735 at 5746.722 kb on - strand, within PFLU_RS25735 at 5746.722 kb on - strand, within PFLU_RS25735 at 5746.722 kb on - strand, within PFLU_RS25735 at 5746.756 kb on + strand at 5746.756 kb on + strand at 5746.756 kb on + strand at 5746.756 kb on + strand at 5746.756 kb on + strand at 5746.756 kb on + strand at 5746.757 kb on - strand at 5746.757 kb on - strand at 5746.757 kb on - strand at 5746.757 kb on - strand at 5746.757 kb on - strand at 5746.757 kb on - strand at 5746.757 kb on - strand at 5746.806 kb on + strand at 5746.807 kb on - strand at 5746.831 kb on + strand at 5746.888 kb on + strand at 5746.888 kb on + strand at 5746.888 kb on + strand at 5746.888 kb on + strand at 5746.888 kb on + strand at 5746.889 kb on - strand at 5746.950 kb on + strand at 5747.051 kb on + strand at 5747.051 kb on + strand at 5747.051 kb on + strand at 5747.052 kb on - strand at 5747.052 kb on - strand at 5747.053 kb on + strand at 5747.053 kb on + strand at 5747.053 kb on + strand at 5747.053 kb on + strand at 5747.054 kb on - strand at 5747.059 kb on + strand at 5747.059 kb on + strand at 5747.059 kb on + strand at 5747.059 kb on + strand at 5747.060 kb on - strand at 5747.060 kb on - strand at 5747.060 kb on - strand at 5747.060 kb on - strand at 5747.060 kb on - strand at 5747.062 kb on + strand at 5747.063 kb on - strand at 5747.074 kb on - strand at 5747.074 kb on - strand at 5747.074 kb on - strand at 5747.074 kb on - strand at 5747.074 kb on - strand at 5747.085 kb on + strand at 5747.086 kb on - strand at 5747.086 kb on - strand at 5747.086 kb on - strand at 5747.086 kb on - strand at 5747.095 kb on + strand at 5747.096 kb on - strand at 5747.101 kb on + strand at 5747.151 kb on + strand at 5747.151 kb on + strand at 5747.151 kb on + strand at 5747.151 kb on + strand at 5747.151 kb on + strand at 5747.152 kb on - strand at 5747.152 kb on - strand at 5747.152 kb on - strand at 5747.152 kb on - strand at 5747.225 kb on + strand at 5747.253 kb on + strand at 5747.253 kb on + strand at 5747.253 kb on + strand at 5747.254 kb on - strand at 5747.254 kb on - strand at 5747.254 kb on - strand at 5747.371 kb on + strand, within PFLU_RS31095 at 5747.374 kb on + strand, within PFLU_RS31095 at 5747.374 kb on + strand, within PFLU_RS31095 at 5747.374 kb on + strand, within PFLU_RS31095 at 5747.380 kb on + strand, within PFLU_RS31095 at 5747.381 kb on - strand, within PFLU_RS31095 at 5747.381 kb on - strand, within PFLU_RS31095 at 5747.393 kb on + strand, within PFLU_RS31095 at 5747.393 kb on + strand, within PFLU_RS31095 at 5747.393 kb on + strand, within PFLU_RS31095 at 5747.393 kb on + strand, within PFLU_RS31095 at 5747.393 kb on + strand, within PFLU_RS31095 at 5747.393 kb on + strand, within PFLU_RS31095 at 5747.394 kb on - strand, within PFLU_RS31095 at 5747.394 kb on - strand, within PFLU_RS31095 at 5747.394 kb on - strand, within PFLU_RS31095 at 5747.394 kb on - strand, within PFLU_RS31095 at 5747.394 kb on - strand, within PFLU_RS31095 at 5747.422 kb on + strand, within PFLU_RS31095 at 5747.422 kb on + strand, within PFLU_RS31095 at 5747.422 kb on + strand, within PFLU_RS31095 at 5747.422 kb on + strand, within PFLU_RS31095 at 5747.422 kb on + strand, within PFLU_RS31095 at 5747.423 kb on - strand, within PFLU_RS31095 at 5747.463 kb on + strand, within PFLU_RS31095 at 5747.464 kb on - strand, within PFLU_RS31095 at 5747.479 kb on + strand, within PFLU_RS31095 at 5747.479 kb on + strand, within PFLU_RS31095 at 5747.479 kb on + strand, within PFLU_RS31095 at 5747.480 kb on - strand, within PFLU_RS31095 at 5747.480 kb on - strand, within PFLU_RS31095 at 5747.490 kb on + strand, within PFLU_RS31095 at 5747.490 kb on + strand, within PFLU_RS31095 at 5747.491 kb on - strand, within PFLU_RS31095 at 5747.491 kb on - strand, within PFLU_RS31095 at 5747.491 kb on - strand, within PFLU_RS31095 at 5747.506 kb on + strand at 5747.506 kb on + strand at 5747.507 kb on - strand at 5747.507 kb on - strand at 5747.507 kb on - strand at 5747.514 kb on - strand at 5747.514 kb on - strand at 5747.624 kb on + strand at 5747.624 kb on + strand at 5747.625 kb on - strand at 5747.625 kb on - strand at 5747.700 kb on + strand at 5747.748 kb on + strand, within PFLU_RS25740 at 5747.748 kb on + strand, within PFLU_RS25740 at 5747.748 kb on + strand, within PFLU_RS25740 at 5747.822 kb on + strand, within PFLU_RS25740 at 5747.861 kb on + strand, within PFLU_RS25740
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 5,744,496 + PFLU_RS25730 0.69 -0.2 5,744,496 + PFLU_RS25730 0.69 -0.9 5,744,496 + PFLU_RS25730 0.69 -1.0 5,744,497 - PFLU_RS25730 0.69 -1.3 5,744,497 - PFLU_RS25730 0.69 -0.9 5,744,497 - PFLU_RS25730 0.69 -0.0 5,744,497 - PFLU_RS25730 0.69 -2.4 5,744,643 + PFLU_RS25730 0.74 -1.8 5,744,660 + PFLU_RS25730 0.74 -0.8 5,745,014 + PFLU_RS25730 0.86 +1.0 5,745,014 + PFLU_RS25730 0.86 -1.2 5,745,014 + PFLU_RS25730 0.86 +0.0 5,745,014 + PFLU_RS25730 0.86 -2.8 5,745,014 + PFLU_RS25730 0.86 -3.2 5,745,015 - PFLU_RS25730 0.86 -1.6 5,745,015 - PFLU_RS25730 0.86 -0.2 5,745,015 - PFLU_RS25730 0.86 -0.2 5,745,015 - PFLU_RS25730 0.86 -1.2 5,745,015 - PFLU_RS25730 0.86 -0.8 5,745,162 + +1.3 5,745,162 + -1.5 5,745,162 + +1.3 5,745,162 + +2.0 5,745,162 + +1.7 5,745,162 + -0.4 5,745,162 + +0.9 5,745,162 + -0.6 5,745,162 + +0.5 5,745,163 - -1.6 5,745,163 - -1.8 5,745,163 - +0.7 5,745,192 + +1.6 5,745,192 + +1.0 5,745,193 - +0.6 5,745,198 + +0.7 5,745,199 - -0.4 5,745,264 + -0.0 5,745,289 + -0.8 5,745,290 - -0.6 5,745,311 - -1.4 5,745,516 - -1.3 5,745,671 + PFLU_RS25735 0.16 -1.5 5,745,671 + PFLU_RS25735 0.16 -0.0 5,745,672 - PFLU_RS25735 0.16 -2.1 5,745,672 - PFLU_RS25735 0.16 +0.6 5,745,672 - PFLU_RS25735 0.16 -1.8 5,745,723 - PFLU_RS25735 0.20 -0.8 5,745,723 - PFLU_RS25735 0.20 -1.1 5,745,723 - PFLU_RS25735 0.20 -1.1 5,745,723 - PFLU_RS25735 0.20 -1.6 5,745,723 - PFLU_RS25735 0.20 -0.9 5,745,723 - PFLU_RS25735 0.20 -1.0 5,745,911 + PFLU_RS25735 0.33 -1.4 5,745,911 + PFLU_RS25735 0.33 -0.4 5,745,912 - PFLU_RS25735 0.33 +0.2 5,745,912 - PFLU_RS25735 0.33 -2.0 5,745,912 - PFLU_RS25735 0.33 -1.6 5,745,912 - PFLU_RS25735 0.33 -1.8 5,745,912 - PFLU_RS25735 0.33 -1.0 5,745,912 - PFLU_RS25735 0.33 -1.6 5,745,931 - PFLU_RS25735 0.34 -0.6 5,745,931 - PFLU_RS25735 0.34 -2.3 5,745,951 + PFLU_RS25735 0.36 -1.9 5,745,951 + PFLU_RS25735 0.36 -1.1 5,745,951 + PFLU_RS25735 0.36 -0.0 5,745,951 + PFLU_RS25735 0.36 -1.8 5,745,951 + PFLU_RS25735 0.36 -0.0 5,745,951 + PFLU_RS25735 0.36 +1.0 5,745,951 + PFLU_RS25735 0.36 -1.1 5,745,951 + PFLU_RS25735 0.36 -0.0 5,745,951 + PFLU_RS25735 0.36 +0.6 5,745,951 + PFLU_RS25735 0.36 -1.8 5,745,952 - PFLU_RS25735 0.36 -0.4 5,745,952 - PFLU_RS25735 0.36 -2.0 5,745,952 - PFLU_RS25735 0.36 -1.7 5,745,952 - PFLU_RS25735 0.36 -0.4 5,745,952 - PFLU_RS25735 0.36 -0.9 5,745,952 - PFLU_RS25735 0.36 -0.2 5,745,952 - PFLU_RS25735 0.36 -1.1 5,745,952 - PFLU_RS25735 0.36 -0.8 5,745,952 - PFLU_RS25735 0.36 -1.2 5,745,952 - PFLU_RS25735 0.36 -0.9 5,745,952 - PFLU_RS25735 0.36 -1.7 5,745,952 - PFLU_RS25735 0.36 -1.0 5,746,227 + PFLU_RS25735 0.55 +0.2 5,746,228 - PFLU_RS25735 0.55 +0.2 5,746,251 + PFLU_RS25735 0.57 -1.9 5,746,352 + PFLU_RS25735 0.64 +0.2 5,746,352 + PFLU_RS25735 0.64 -2.2 5,746,352 + PFLU_RS25735 0.64 -2.0 5,746,352 + PFLU_RS25735 0.64 -1.2 5,746,352 + PFLU_RS25735 0.64 -0.0 5,746,352 + PFLU_RS25735 0.64 -1.8 5,746,352 + PFLU_RS25735 0.64 -0.8 5,746,352 + PFLU_RS25735 0.64 -0.4 5,746,352 + PFLU_RS25735 0.64 -0.4 5,746,352 + PFLU_RS25735 0.64 -2.0 5,746,352 + PFLU_RS25735 0.64 +1.0 5,746,353 - PFLU_RS25735 0.64 -2.3 5,746,353 - PFLU_RS25735 0.64 -1.3 5,746,353 - PFLU_RS25735 0.64 -0.9 5,746,353 - PFLU_RS25735 0.64 -0.4 5,746,356 - PFLU_RS25735 0.64 +0.2 5,746,511 + PFLU_RS25735 0.75 -2.3 5,746,512 - PFLU_RS25735 0.75 -1.9 5,746,539 + PFLU_RS25735 0.77 -0.6 5,746,540 - PFLU_RS25735 0.77 -0.2 5,746,721 + PFLU_RS25735 0.90 -1.7 5,746,721 + PFLU_RS25735 0.90 -0.4 5,746,721 + PFLU_RS25735 0.90 -1.9 5,746,721 + PFLU_RS25735 0.90 -1.6 5,746,721 + PFLU_RS25735 0.90 -1.6 5,746,722 - PFLU_RS25735 0.90 -0.4 5,746,722 - PFLU_RS25735 0.90 -0.6 5,746,722 - PFLU_RS25735 0.90 -0.9 5,746,756 + -0.9 5,746,756 + -0.8 5,746,756 + -1.1 5,746,756 + -1.3 5,746,756 + -2.0 5,746,756 + -0.4 5,746,757 - -0.2 5,746,757 - +1.0 5,746,757 - -0.9 5,746,757 - -0.6 5,746,757 - -1.0 5,746,757 - -2.0 5,746,757 - -1.7 5,746,806 + -1.3 5,746,807 - +0.2 5,746,831 + -1.0 5,746,888 + +0.6 5,746,888 + -0.1 5,746,888 + -2.0 5,746,888 + +0.4 5,746,888 + -0.0 5,746,889 - +0.6 5,746,950 + -1.2 5,747,051 + -0.6 5,747,051 + +0.7 5,747,051 + -1.2 5,747,052 - -2.1 5,747,052 - -1.7 5,747,053 + +0.5 5,747,053 + +2.0 5,747,053 + +0.2 5,747,053 + -0.5 5,747,054 - -1.3 5,747,059 + +3.2 5,747,059 + +2.8 5,747,059 + -0.3 5,747,059 + -1.0 5,747,060 - -2.1 5,747,060 - +0.1 5,747,060 - -1.9 5,747,060 - -2.1 5,747,060 - -0.9 5,747,062 + -0.3 5,747,063 - -0.4 5,747,074 - -0.8 5,747,074 - -2.7 5,747,074 - +0.4 5,747,074 - -0.9 5,747,074 - -2.2 5,747,085 + +1.4 5,747,086 - -1.4 5,747,086 - -2.7 5,747,086 - -3.3 5,747,086 - -2.0 5,747,095 + +1.3 5,747,096 - -2.1 5,747,101 + -0.4 5,747,151 + -0.1 5,747,151 + -0.4 5,747,151 + -1.7 5,747,151 + +0.4 5,747,151 + -1.2 5,747,152 - -0.5 5,747,152 - +3.6 5,747,152 - -2.2 5,747,152 - -0.1 5,747,225 + +1.7 5,747,253 + +0.2 5,747,253 + -2.2 5,747,253 + -3.1 5,747,254 - -2.0 5,747,254 - -0.6 5,747,254 - -0.5 5,747,371 + PFLU_RS31095 0.22 -1.7 5,747,374 + PFLU_RS31095 0.24 +2.0 5,747,374 + PFLU_RS31095 0.24 +0.7 5,747,374 + PFLU_RS31095 0.24 +0.0 5,747,380 + PFLU_RS31095 0.27 +0.1 5,747,381 - PFLU_RS31095 0.27 +0.3 5,747,381 - PFLU_RS31095 0.27 +1.0 5,747,393 + PFLU_RS31095 0.34 -0.2 5,747,393 + PFLU_RS31095 0.34 -1.8 5,747,393 + PFLU_RS31095 0.34 -0.4 5,747,393 + PFLU_RS31095 0.34 +0.6 5,747,393 + PFLU_RS31095 0.34 -1.0 5,747,393 + PFLU_RS31095 0.34 -0.8 5,747,394 - PFLU_RS31095 0.34 +0.6 5,747,394 - PFLU_RS31095 0.34 -1.4 5,747,394 - PFLU_RS31095 0.34 +0.6 5,747,394 - PFLU_RS31095 0.34 -1.5 5,747,394 - PFLU_RS31095 0.34 -3.0 5,747,422 + PFLU_RS31095 0.49 +0.5 5,747,422 + PFLU_RS31095 0.49 -2.3 5,747,422 + PFLU_RS31095 0.49 +0.7 5,747,422 + PFLU_RS31095 0.49 +0.5 5,747,422 + PFLU_RS31095 0.49 +0.5 5,747,423 - PFLU_RS31095 0.50 -0.6 5,747,463 + PFLU_RS31095 0.72 +0.5 5,747,464 - PFLU_RS31095 0.72 +0.3 5,747,479 + PFLU_RS31095 0.80 +1.3 5,747,479 + PFLU_RS31095 0.80 +0.9 5,747,479 + PFLU_RS31095 0.80 -1.0 5,747,480 - PFLU_RS31095 0.81 -2.0 5,747,480 - PFLU_RS31095 0.81 -0.9 5,747,490 + PFLU_RS31095 0.86 -1.3 5,747,490 + PFLU_RS31095 0.86 +1.7 5,747,491 - PFLU_RS31095 0.87 -0.4 5,747,491 - PFLU_RS31095 0.87 -0.7 5,747,491 - PFLU_RS31095 0.87 +0.5 5,747,506 + -2.6 5,747,506 + -0.6 5,747,507 - -1.8 5,747,507 - -0.8 5,747,507 - +2.0 5,747,514 - +0.0 5,747,514 - -1.8 5,747,624 + +0.2 5,747,624 + +1.5 5,747,625 - +1.0 5,747,625 - +0.2 5,747,700 + -0.0 5,747,748 + PFLU_RS25740 0.12 -1.5 5,747,748 + PFLU_RS25740 0.12 +0.2 5,747,748 + PFLU_RS25740 0.12 +1.0 5,747,822 + PFLU_RS25740 0.17 -0.6 5,747,861 + PFLU_RS25740 0.20 +1.0
Or see this region's nucleotide sequence