Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS25710

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
5,738,346	+		PFLU_RS25700	0.11	+0.8
5,738,346	+		PFLU_RS25700	0.11	-2.5
5,738,408	+		PFLU_RS25700	0.31	+0.5
5,738,408	+		PFLU_RS25700	0.31	-2.4
5,738,408	+		PFLU_RS25700	0.31	-0.7
5,738,408	+		PFLU_RS25700	0.31	+1.0
5,738,408	+		PFLU_RS25700	0.31	+1.0
5,738,408	+		PFLU_RS25700	0.31	+0.8
5,738,409	-		PFLU_RS25700	0.31	-0.8
5,738,409	-		PFLU_RS25700	0.31	-0.8
5,738,409	-		PFLU_RS25700	0.31	-0.8
5,738,409	-		PFLU_RS25700	0.31	+1.0
5,738,409	-		PFLU_RS25700	0.31	-1.2
5,738,409	-		PFLU_RS25700	0.31	+0.6
5,738,413	+		PFLU_RS25700	0.32	+1.1
5,738,413	+		PFLU_RS25700	0.32	+1.0
5,738,413	+		PFLU_RS25700	0.32	-2.7
5,738,413	+		PFLU_RS25700	0.32	+1.3
5,738,413	+		PFLU_RS25700	0.32	-0.3
5,738,413	+		PFLU_RS25700	0.32	-1.0
5,738,413	+		PFLU_RS25700	0.32	+0.3
5,738,413	+		PFLU_RS25700	0.32	-0.1
5,738,413	+		PFLU_RS25700	0.32	-2.6
5,738,414	-		PFLU_RS25700	0.32	-0.0
5,738,414	-		PFLU_RS25700	0.32	+0.6
5,738,414	-		PFLU_RS25700	0.32	+0.3
5,738,414	-		PFLU_RS25700	0.32	-2.2
5,738,419	+		PFLU_RS25700	0.34	+0.4
5,738,419	+		PFLU_RS25700	0.34	+0.0
5,738,419	+		PFLU_RS25700	0.34	-1.9
5,738,419	+		PFLU_RS25700	0.34	-1.5
5,738,419	+		PFLU_RS25700	0.34	-0.5
5,738,419	+		PFLU_RS25700	0.34	-1.4
5,738,419	+		PFLU_RS25700	0.34	+1.7
5,738,419	+		PFLU_RS25700	0.34	-0.0
5,738,419	+		PFLU_RS25700	0.34	-0.3
5,738,419	+		PFLU_RS25700	0.34	+0.3
5,738,419	+		PFLU_RS25700	0.34	-1.2
5,738,419	+		PFLU_RS25700	0.34	+0.7
5,738,419	+		PFLU_RS25700	0.34	+1.4
5,738,420	-		PFLU_RS25700	0.34	+1.0
5,738,420	-		PFLU_RS25700	0.34	-0.9
5,738,420	-		PFLU_RS25700	0.34	+1.4
5,738,420	-		PFLU_RS25700	0.34	-0.2
5,738,420	-		PFLU_RS25700	0.34	-1.8
5,738,420	-		PFLU_RS25700	0.34	-2.6
5,738,420	-		PFLU_RS25700	0.34	+1.2
5,738,420	-		PFLU_RS25700	0.34	+1.5
5,738,626	+				+2.3
5,738,627	-				-2.9
5,738,627	-				+0.7
5,738,627	-				-1.5
5,738,689	+				+0.6
5,738,690	-				-0.3
5,738,690	-				+1.1
5,738,690	-				-1.3
5,738,690	-				+2.1
5,738,690	-				-0.0
5,738,800	+		PFLU_RS25705	0.25	-1.5
5,738,800	+		PFLU_RS25705	0.25	+1.1
5,738,800	+		PFLU_RS25705	0.25	-0.7
5,738,800	+		PFLU_RS25705	0.25	+0.8
5,738,800	+		PFLU_RS25705	0.25	-0.8
5,738,801	-		PFLU_RS25705	0.25	+0.1
5,738,801	-		PFLU_RS25705	0.25	+1.2
5,738,801	-		PFLU_RS25705	0.25	+1.5
5,738,801	-		PFLU_RS25705	0.25	-0.4
5,738,801	-		PFLU_RS25705	0.25	+0.2
5,738,801	-		PFLU_RS25705	0.25	-0.7
5,738,801	-		PFLU_RS25705	0.25	+0.8
5,738,941	+		PFLU_RS25705	0.44	-2.3
5,738,942	-		PFLU_RS25705	0.45	+0.7
5,738,942	-		PFLU_RS25705	0.45	-1.1
5,738,942	-		PFLU_RS25705	0.45	+0.9
5,738,942	-		PFLU_RS25705	0.45	-0.2
5,738,942	-		PFLU_RS25705	0.45	-1.8
5,738,942	-		PFLU_RS25705	0.45	-1.6
5,738,998	+		PFLU_RS25705	0.52	+3.0
5,738,998	+		PFLU_RS25705	0.52	+1.4
5,739,024	-		PFLU_RS25705	0.56	-0.7
5,739,024	-		PFLU_RS25705	0.56	+1.6
5,739,140	+		PFLU_RS25705	0.72	+1.0
5,739,140	+		PFLU_RS25705	0.72	-0.4
5,739,140	+		PFLU_RS25705	0.72	+0.5
5,739,290	-				+0.5
5,739,290	-				+1.3
5,739,327	-				-1.2
5,739,327	-				+0.6
5,739,409	-				+0.3
5,739,540	+		PFLU_RS25710	0.17	-0.0
5,739,541	-		PFLU_RS25710	0.18	+1.6
5,739,546	+		PFLU_RS25710	0.18	-0.4
5,739,546	+		PFLU_RS25710	0.18	+0.1
5,739,546	+		PFLU_RS25710	0.18	-1.2
5,739,546	+		PFLU_RS25710	0.18	+0.6
5,739,547	-		PFLU_RS25710	0.18	-1.2
5,739,547	-		PFLU_RS25710	0.18	+1.1
5,739,547	-		PFLU_RS25710	0.18	-0.7
5,739,717	+		PFLU_RS25710	0.33	+0.4
5,739,717	+		PFLU_RS25710	0.33	-0.1
5,739,718	-		PFLU_RS25710	0.33	+0.2
5,739,804	+		PFLU_RS25710	0.40	+0.8
5,739,804	+		PFLU_RS25710	0.40	-0.3
5,739,805	-		PFLU_RS25710	0.40	-2.2
5,739,818	-		PFLU_RS25710	0.41	-0.4
5,739,818	-		PFLU_RS25710	0.41	+0.9
5,739,873	+		PFLU_RS25710	0.46	+0.3
5,739,874	-		PFLU_RS25710	0.46	-2.1
5,739,888	+		PFLU_RS25710	0.47	-0.3
5,739,888	+		PFLU_RS25710	0.47	-0.7
5,739,888	+		PFLU_RS25710	0.47	-3.6
5,739,888	+		PFLU_RS25710	0.47	+2.6
5,739,889	-		PFLU_RS25710	0.47	-1.2
5,739,889	-		PFLU_RS25710	0.47	+0.6
5,740,225	+		PFLU_RS25710	0.76	+0.3
5,740,263	+		PFLU_RS25710	0.79	-1.0
5,740,263	+		PFLU_RS25710	0.79	-0.2
5,740,263	+		PFLU_RS25710	0.79	+1.1
5,740,263	+		PFLU_RS25710	0.79	-0.2
5,740,263	+		PFLU_RS25710	0.79	-0.8
5,740,264	-		PFLU_RS25710	0.79	-3.7
5,740,264	-		PFLU_RS25710	0.79	+2.6
5,740,264	-		PFLU_RS25710	0.79	+1.2
5,740,264	-		PFLU_RS25710	0.79	+1.1
5,740,264	-		PFLU_RS25710	0.79	-1.4
5,740,494	+				+0.5
5,740,494	+				+0.7
5,740,495	-				-0.6
5,740,495	-				+1.3
5,740,495	-				-1.0
5,740,509	-				-0.3
5,740,544	+				-0.0
5,740,544	+				+0.1
5,740,572	+				-1.5
5,740,572	+				+0.6
5,740,572	+				+2.9
5,740,572	+				-1.5
5,740,572	+				+1.8
5,740,572	+				+1.0
5,740,572	+				+0.9
5,740,572	+				-1.1
5,740,572	+				+0.9
5,740,572	+				-0.2
5,740,572	+				+1.6
5,740,572	+				+1.0
5,740,573	-				+1.4
5,740,573	-				-0.9
5,740,573	-				-2.4
5,740,573	-				-1.6
5,740,573	-				+1.6
5,740,573	-				-1.1
5,740,573	-				+0.6
5,740,573	-				-0.9
5,740,573	-				-2.4
5,740,573	-				-0.9
5,740,573	-				-1.5
5,740,573	-				+0.8
5,740,573	-				+0.7
5,740,624	-				-2.9
5,740,729	+				-1.8
5,740,730	-				-2.6
5,740,736	+				-2.3
5,740,736	+				-1.9
5,740,737	-				-1.1
5,740,803	+				+0.7
5,740,803	+				-3.0
5,740,803	+				-2.1
5,740,803	+				-0.1
5,740,803	+				-0.7
5,740,803	+				+0.9
5,740,804	-				-1.8
5,740,804	-				-0.9
5,740,804	-				-2.5
5,740,804	-				-2.7
5,740,823	+				-2.0
5,740,823	+				-1.8
5,740,823	+				-1.8
5,740,823	+				-2.5
5,740,823	+				-1.4
5,740,823	+				-0.8
5,740,824	-				-0.8
5,740,824	-				-2.1
5,740,824	-				-0.9
5,740,824	-				-2.7
5,740,824	-				-2.0
5,740,824	-				-0.8
5,740,824	-				-2.5
5,740,824	-				-1.2
5,740,824	-				-1.0
5,740,824	-				-1.6
5,740,879	+		PFLU_RS25715	0.12	-0.8
5,740,879	+		PFLU_RS25715	0.12	-1.0
5,740,879	+		PFLU_RS25715	0.12	-2.6
5,740,879	+		PFLU_RS25715	0.12	-2.1
5,740,879	+		PFLU_RS25715	0.12	-1.3
5,740,879	+		PFLU_RS25715	0.12	-1.0
5,740,880	-		PFLU_RS25715	0.12	-0.4
5,740,880	-		PFLU_RS25715	0.12	-0.2
5,740,880	-		PFLU_RS25715	0.12	-2.2
5,740,880	-		PFLU_RS25715	0.12	-0.9
5,740,903	+		PFLU_RS25715	0.17	+0.6
5,740,903	+		PFLU_RS25715	0.17	-0.2
5,740,903	+		PFLU_RS25715	0.17	-2.5
5,740,903	+		PFLU_RS25715	0.17	-2.4
5,740,903	+		PFLU_RS25715	0.17	-1.3
5,740,903	+		PFLU_RS25715	0.17	-1.5
5,740,903	+		PFLU_RS25715	0.17	-2.6
5,740,903	+		PFLU_RS25715	0.17	-0.9
5,740,903	+		PFLU_RS25715	0.17	-0.9
5,740,903	+		PFLU_RS25715	0.17	-2.7
5,740,903	+		PFLU_RS25715	0.17	-2.3
5,740,903	+		PFLU_RS25715	0.17	-3.1
5,740,903	+		PFLU_RS25715	0.17	-0.6
5,740,903	+		PFLU_RS25715	0.17	-1.3
5,740,903	+		PFLU_RS25715	0.17	-1.8
5,740,903	+		PFLU_RS25715	0.17	-1.0
5,740,903	+		PFLU_RS25715	0.17	+1.0
5,740,903	+		PFLU_RS25715	0.17	-0.6
5,740,904	-		PFLU_RS25715	0.17	-0.2
5,740,904	-		PFLU_RS25715	0.17	-2.4
5,740,904	-		PFLU_RS25715	0.17	-1.0
5,740,904	-		PFLU_RS25715	0.17	-2.2
5,740,904	-		PFLU_RS25715	0.17	-2.1
5,740,904	-		PFLU_RS25715	0.17	-1.0
5,740,904	-		PFLU_RS25715	0.17	-2.8
5,740,904	-		PFLU_RS25715	0.17	-0.6
5,740,904	-		PFLU_RS25715	0.17	-1.5
5,740,904	-		PFLU_RS25715	0.17	-0.6
5,740,904	-		PFLU_RS25715	0.17	-1.1
5,740,904	-		PFLU_RS25715	0.17	-1.6
5,740,904	-		PFLU_RS25715	0.17	+1.6
5,740,904	-		PFLU_RS25715	0.17	-1.0
5,740,904	-		PFLU_RS25715	0.17	-0.0
5,740,904	-		PFLU_RS25715	0.17	-0.8
5,740,904	-		PFLU_RS25715	0.17	+0.2
5,740,904	-		PFLU_RS25715	0.17	-0.8
5,740,904	-		PFLU_RS25715	0.17	-1.4
5,740,904	-		PFLU_RS25715	0.17	-1.0
5,740,904	-		PFLU_RS25715	0.17	-1.4
5,740,904	-		PFLU_RS25715	0.17	-1.2
5,740,939	-		PFLU_RS25715	0.25	-1.1
5,741,143	+		PFLU_RS25715	0.71	-2.0
5,741,143	+		PFLU_RS25715	0.71	-1.1
5,741,144	-		PFLU_RS25715	0.72	-1.5
5,741,219	+		PFLU_RS25715	0.89	+0.2
5,741,219	+		PFLU_RS25715	0.89	-0.4
5,741,219	+		PFLU_RS25715	0.89	-0.4
5,741,219	+		PFLU_RS25715	0.89	+0.2
5,741,220	-		PFLU_RS25715	0.89	-1.1
5,741,220	-		PFLU_RS25715	0.89	-0.2
5,741,266	+				+0.9
5,741,266	+				-1.9
5,741,266	+				+0.7
5,741,266	+				+1.7
5,741,266	+				+2.1
5,741,266	+				+0.8
5,741,267	-				+1.0
5,741,267	-				-2.0
5,741,267	-				-2.3
5,741,267	-				-1.3
5,741,267	-				-1.8
5,741,340	+				+1.4
5,741,340	+				+4.4
5,741,340	+				-0.3
5,741,341	-				-1.4
5,741,364	+				-0.8
5,741,364	+				-1.2
5,741,364	+				+0.5
5,741,364	+				-0.5
5,741,365	-				-2.7
5,741,365	-				-2.4
5,741,365	-				+1.7
5,741,365	-				+1.9
5,741,365	-				+0.8
5,741,365	-				-0.4
5,741,365	-				+1.4
5,741,365	-				-3.0
5,741,365	-				-1.6
5,741,368	+				-0.1
5,741,368	+				-0.4
5,741,368	+				+0.9
5,741,368	+				+1.3
5,741,368	+				+1.0
5,741,368	+				+1.0
5,741,368	+				+1.7
5,741,368	+				+1.0
5,741,368	+				+0.6
5,741,368	+				-1.4
5,741,368	+				+1.0
5,741,368	+				-1.2
5,741,368	+				+1.1
5,741,368	+				-1.8
5,741,368	+				+0.5
5,741,368	+				+2.6
5,741,368	+				-0.6
5,741,368	+				-1.0
5,741,368	+				+0.2
5,741,368	+				-0.1
5,741,368	+				+0.3
5,741,369	-				-0.9
5,741,369	-				-0.8
5,741,369	-				-0.6
5,741,369	-				+0.2
5,741,369	-				-2.0
5,741,369	-				-1.6
5,741,369	-				+1.9
5,741,369	-				+1.1
5,741,369	-				-0.8
5,741,369	-				+1.8
5,741,369	-				-0.5
5,741,369	-				+0.2
5,741,369	-				+0.2
5,741,369	-				-1.7