Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS25650

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
5,726,066	-		PFLU_RS25640	0.55	-0.8
5,726,175	+		PFLU_RS25640	0.66	-1.3
5,726,175	+		PFLU_RS25640	0.66	-0.6
5,726,175	+		PFLU_RS25640	0.66	-0.9
5,726,176	-		PFLU_RS25640	0.66	-2.1
5,726,176	-		PFLU_RS25640	0.66	-2.3
5,726,176	-		PFLU_RS25640	0.66	-2.7
5,726,176	-		PFLU_RS25640	0.66	-2.4
5,726,176	-		PFLU_RS25640	0.66	-0.9
5,726,176	-		PFLU_RS25640	0.66	-2.4
5,726,185	+		PFLU_RS25640	0.67	-2.7
5,726,185	+		PFLU_RS25640	0.67	-1.6
5,726,186	-		PFLU_RS25640	0.67	-0.5
5,726,186	-		PFLU_RS25640	0.67	-0.6
5,726,257	+		PFLU_RS25640	0.74	-0.5
5,726,257	+		PFLU_RS25640	0.74	-2.7
5,726,257	+		PFLU_RS25640	0.74	-0.9
5,726,257	+		PFLU_RS25640	0.74	-3.6
5,726,257	+		PFLU_RS25640	0.74	-2.1
5,726,257	+		PFLU_RS25640	0.74	-1.3
5,726,257	+		PFLU_RS25640	0.74	-1.6
5,726,258	-		PFLU_RS25640	0.74	-2.4
5,726,258	-		PFLU_RS25640	0.74	-0.8
5,726,258	-		PFLU_RS25640	0.74	-1.1
5,726,382	-		PFLU_RS25640	0.86	-1.5
5,726,382	-		PFLU_RS25640	0.86	-1.9
5,726,509	+				-2.1
5,726,509	+				-2.6
5,726,509	+				-2.6
5,726,510	-				-2.3
5,726,513	-				-3.1
5,726,533	+				-1.3
5,726,533	+				-2.1
5,726,533	+				-2.1
5,726,533	+				+0.2
5,726,533	+				-2.6
5,726,533	+				-0.8
5,726,533	+				-2.6
5,726,533	+				-0.9
5,726,533	+				-2.4
5,726,534	-				-1.1
5,726,534	-				-2.6
5,726,534	-				-2.0
5,726,534	-				-1.5
5,726,534	-				-1.2
5,726,534	-				-3.5
5,726,534	-				-3.4
5,726,534	-				-3.1
5,726,534	-				-0.8
5,726,534	-				-2.5
5,726,534	-				-1.8
5,726,534	-				-3.0
5,726,534	-				-1.7
5,726,534	-				-0.5
5,726,534	-				-3.0
5,726,534	-				-1.6
5,726,534	-				-0.7
5,726,534	-				+0.3
5,726,534	-				-1.4
5,726,534	-				-1.9
5,726,534	-				-1.6
5,726,534	-				-2.0
5,726,534	-				-1.3
5,726,535	+				-2.2
5,726,535	+				-0.6
5,726,535	+				-0.5
5,726,535	+				-0.9
5,726,535	+				-1.6
5,726,535	+				-0.8
5,726,535	+				-3.6
5,726,535	+				-2.2
5,726,535	+				-1.5
5,726,535	+				-2.9
5,726,535	+				-2.6
5,726,535	+				-2.8
5,726,535	+				-2.5
5,726,535	+				-2.2
5,726,535	+				-2.8
5,726,535	+				-2.2
5,726,535	+				-2.6
5,726,535	+				-1.6
5,726,535	+				+0.2
5,726,535	+				-2.6
5,726,535	+				-2.3
5,726,535	+				-3.1
5,726,535	+				-2.1
5,726,535	+				-1.8
5,726,535	+				-1.9
5,726,535	+				-1.6
5,726,536	-				-0.6
5,726,536	-				+0.3
5,726,536	-				-2.0
5,726,536	-				+0.6
5,726,536	-				-1.2
5,726,536	-				-2.9
5,726,536	-				-3.4
5,726,536	-				+1.2
5,726,536	-				+0.2
5,726,536	-				-1.2
5,726,536	-				+0.5
5,726,536	-				+1.0
5,726,536	-				+0.0
5,726,536	-				-2.4
5,726,536	-				+2.3
5,726,536	-				-0.5
5,726,536	-				+0.3
5,726,536	-				-0.1
5,726,536	-				+0.1
5,726,536	-				+0.1
5,726,536	-				-1.1
5,726,536	-				-0.5
5,726,536	-				-1.6
5,726,536	-				-0.6
5,726,536	-				+0.3
5,726,536	-				-1.6
5,726,536	-				+3.2
5,726,536	-				-2.2
5,726,536	-				-1.1
5,726,537	+				-0.5
5,726,537	+				-2.1
5,726,537	+				-3.4
5,726,537	+				-2.8
5,726,537	+				-2.2
5,726,538	-				-0.6
5,726,538	-				+0.5
5,726,538	-				-2.6
5,726,538	-				+1.7
5,726,538	-				-0.6
5,726,538	-				-0.0
5,726,538	-				-1.2
5,726,538	-				-1.4
5,726,538	-				+1.1
5,726,538	-				-1.1
5,726,538	-				-2.0
5,726,549	-				-1.5
5,726,561	+				-3.2
5,726,562	-				-1.5
5,726,562	-				-1.6
5,726,571	+				-1.3
5,726,583	-				-1.6
5,726,583	-				-1.5
5,726,622	-		PFLU_RS25645	0.11	+1.4
5,726,622	-		PFLU_RS25645	0.11	+0.5
5,726,681	-		PFLU_RS25645	0.23	-0.3
5,726,702	-		PFLU_RS25645	0.27	+1.5
5,726,702	-		PFLU_RS25645	0.27	-0.5
5,726,702	-		PFLU_RS25645	0.27	+0.5
5,726,704	-		PFLU_RS25645	0.27	+1.5
5,726,704	-		PFLU_RS25645	0.27	+1.5
5,727,066	-				-0.9
5,727,066	-				-0.8
5,727,066	-				-1.1
5,727,066	-				+0.5
5,727,066	-				-1.2
5,727,066	-				+1.5
5,727,070	-				-2.3
5,727,070	-				-2.2
5,727,070	-				-0.1
5,727,070	-				-1.9
5,727,070	-				-1.2
5,727,070	-				-1.1
5,727,070	-				-1.7
5,727,102	+				+0.9
5,727,102	+				+0.9
5,727,102	+				-0.3
5,727,103	-				+0.9
5,727,103	-				-1.2
5,727,103	-				-0.1
5,728,801	+				-1.5
5,728,802	-				+2.0
5,728,802	-				-2.0
5,728,814	+				-2.6
5,728,815	-				-0.0
5,728,815	-				-1.5
5,728,843	+				-1.6
5,728,843	+				-1.3
5,728,843	+				-1.9
5,728,844	-				-1.4
5,728,844	-				-0.3
5,728,844	-				-2.6
5,728,844	-				-1.6
5,728,844	-				-0.9
5,728,844	-				-0.7
5,728,844	-				-1.2
5,728,846	+				-2.4
5,728,846	+				-2.6
5,728,846	+				-0.8
5,728,846	+				-1.9
5,728,846	+				-0.3
5,728,846	+				-2.3
5,728,847	-				+1.1
5,728,847	-				+0.2
5,728,847	-				-0.2
5,728,847	-				+1.7
5,728,847	-				+0.5
5,728,847	-				-2.1
5,728,847	-				+0.5
5,728,852	+				-3.1
5,728,852	+				-0.5
5,728,852	+				-0.6
5,728,853	-				-1.5
5,728,853	-				+0.4
5,728,853	-				-1.0
5,728,853	-				-1.4
5,728,890	+				-0.0
5,728,891	-				-2.8
5,728,891	-				-1.3
5,728,891	-				+1.5
5,728,891	-				-1.9
5,728,891	-				-1.3
5,728,913	+				-1.8
5,728,913	+				-1.6
5,728,913	+				+0.2
5,728,914	-				-1.9
5,728,914	-				+0.5
5,728,914	-				-3.8
5,728,914	-				+2.5
5,728,914	-				+1.2
5,728,962	-				-0.3
5,728,977	+				-0.8
5,728,977	+				-1.3
5,728,977	+				+2.5
5,728,977	+				+1.5
5,728,977	+				-0.0
5,728,978	-				-1.5
5,728,978	-				-2.6
5,728,978	-				-1.8
5,728,978	-				-2.3
5,728,978	-				+1.0
5,728,978	-				-2.8
5,728,980	+				+1.0
5,728,980	+				-0.5
5,728,980	+				+0.2
5,728,980	+				-0.5
5,728,980	+				-0.3
5,728,980	+				-0.0
5,728,980	+				-0.3
5,728,981	-				-0.8
5,728,981	-				-2.6
5,728,981	-				-1.5
5,729,090	-				+2.3
5,729,109	+				+0.3
5,729,109	+				+0.2
5,729,110	-				+2.5
5,729,110	-				-1.6
5,729,224	-				-2.2
5,729,224	-				+0.2
5,729,266	+		PFLU_RS25655	0.13	+2.5
5,729,266	+		PFLU_RS25655	0.13	-0.0
5,729,266	+		PFLU_RS25655	0.13	+0.1
5,729,266	+		PFLU_RS25655	0.13	-2.5
5,729,266	+		PFLU_RS25655	0.13	+0.1
5,729,266	+		PFLU_RS25655	0.13	-1.8
5,729,266	+		PFLU_RS25655	0.13	+1.4
5,729,266	+		PFLU_RS25655	0.13	+0.0
5,729,267	-		PFLU_RS25655	0.14	-2.1
5,729,267	-		PFLU_RS25655	0.14	+1.0
5,729,267	-		PFLU_RS25655	0.14	+0.5
5,729,267	-		PFLU_RS25655	0.14	+1.0
5,729,267	-		PFLU_RS25655	0.14	-1.4
5,729,267	-		PFLU_RS25655	0.14	+0.2
5,729,267	-		PFLU_RS25655	0.14	+0.2
5,729,270	+		PFLU_RS25655	0.15	+1.0
5,729,270	+		PFLU_RS25655	0.15	-1.9
5,729,270	+		PFLU_RS25655	0.15	+0.6
5,729,270	+		PFLU_RS25655	0.15	+0.3
5,729,270	+		PFLU_RS25655	0.15	-0.1
5,729,270	+		PFLU_RS25655	0.15	-0.6
5,729,271	-		PFLU_RS25655	0.15	-3.0
5,729,271	-		PFLU_RS25655	0.15	-2.3
5,729,271	-		PFLU_RS25655	0.15	+1.4
5,729,271	-		PFLU_RS25655	0.15	-0.3
5,729,387	+		PFLU_RS25655	0.50	+0.5
5,729,419	+		PFLU_RS25655	0.60	+0.1
5,729,516	+		PFLU_RS25655	0.89	-1.7
5,729,516	+		PFLU_RS25655	0.89	-1.9
5,729,516	+		PFLU_RS25655	0.89	-1.6
5,729,516	+		PFLU_RS25655	0.89	+1.1
5,729,516	+		PFLU_RS25655	0.89	-0.2
5,729,516	+		PFLU_RS25655	0.89	+2.1
5,729,516	+		PFLU_RS25655	0.89	+1.4
5,729,516	+		PFLU_RS25655	0.89	-0.4
5,729,516	+		PFLU_RS25655	0.89	+2.0
5,729,516	+		PFLU_RS25655	0.89	-1.6
5,729,516	+		PFLU_RS25655	0.89	+0.8
5,729,517	-		PFLU_RS25655	0.89	+0.8
5,729,517	-		PFLU_RS25655	0.89	-2.0
5,729,517	-		PFLU_RS25655	0.89	+1.3
5,729,517	-		PFLU_RS25655	0.89	+0.9
5,729,517	-		PFLU_RS25655	0.89	-1.3
5,729,517	-		PFLU_RS25655	0.89	-0.2
5,729,517	-		PFLU_RS25655	0.89	-0.9
5,729,517	-		PFLU_RS25655	0.89	-0.6
5,729,747	+		PFLU_RS25660	0.27	-2.3
5,729,747	+		PFLU_RS25660	0.27	+0.9
5,729,747	+		PFLU_RS25660	0.27	+0.8
5,729,747	+		PFLU_RS25660	0.27	-0.3
5,729,747	+		PFLU_RS25660	0.27	-0.9
5,729,748	-		PFLU_RS25660	0.27	+0.9
5,729,748	-		PFLU_RS25660	0.27	+2.4