Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS25400

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
5,668,989	+				+0.1
5,668,989	+				+2.8
5,668,989	+				+0.3
5,668,990	-				-0.0
5,668,990	-				-1.9
5,668,990	-				+0.1
5,669,085	+		PFLU_RS25395	0.16	-0.7
5,669,085	+		PFLU_RS25395	0.16	-2.8
5,669,085	+		PFLU_RS25395	0.16	-1.5
5,669,085	+		PFLU_RS25395	0.16	-0.8
5,669,086	-		PFLU_RS25395	0.16	-2.9
5,669,086	-		PFLU_RS25395	0.16	-1.8
5,669,086	-		PFLU_RS25395	0.16	-1.2
5,669,086	-		PFLU_RS25395	0.16	-0.6
5,669,086	-		PFLU_RS25395	0.16	+0.9
5,669,086	-		PFLU_RS25395	0.16	-0.2
5,669,086	-		PFLU_RS25395	0.16	+0.9
5,669,086	-		PFLU_RS25395	0.16	-0.1
5,669,184	+		PFLU_RS25395	0.32	-3.1
5,669,184	+		PFLU_RS25395	0.32	+0.3
5,669,233	+		PFLU_RS25395	0.40	-0.8
5,669,233	+		PFLU_RS25395	0.40	+1.9
5,669,234	-		PFLU_RS25395	0.40	+1.0
5,669,562	+				-0.2
5,669,562	+				+0.2
5,669,594	-				-0.4
5,669,622	-				-2.3
5,669,622	-				-0.7
5,669,622	-				-2.4
5,669,654	+				-3.0
5,669,671	+				+3.0
5,669,672	-				+1.3
5,669,672	-				-0.7
5,669,672	-				-1.7
5,669,752	+				-0.7
5,669,752	+				-0.8
5,669,753	-				-1.1
5,669,753	-				-0.8
5,669,753	-				-0.2
5,669,753	-				-1.6
5,669,790	+				+0.9
5,669,791	-				+2.1
5,669,791	-				-1.3
5,669,791	-				+3.7
5,669,987	-				-0.1
5,670,053	+		PFLU_RS25400	0.10	-1.4
5,670,053	+		PFLU_RS25400	0.10	+3.5
5,670,053	+		PFLU_RS25400	0.10	+2.2
5,670,053	+		PFLU_RS25400	0.10	+1.1
5,670,053	+		PFLU_RS25400	0.10	+0.6
5,670,053	+		PFLU_RS25400	0.10	+0.3
5,670,053	+		PFLU_RS25400	0.10	-0.2
5,670,053	+		PFLU_RS25400	0.10	-1.7
5,670,053	+		PFLU_RS25400	0.10	-0.9
5,670,053	+		PFLU_RS25400	0.10	+0.7
5,670,053	+		PFLU_RS25400	0.10	-0.9
5,670,053	+		PFLU_RS25400	0.10	+0.9
5,670,053	+		PFLU_RS25400	0.10	+0.4
5,670,053	+		PFLU_RS25400	0.10	+0.5
5,670,053	+		PFLU_RS25400	0.10	+1.0
5,670,053	+		PFLU_RS25400	0.10	+1.1
5,670,053	+		PFLU_RS25400	0.10	+1.2
5,670,053	+		PFLU_RS25400	0.10	+0.3
5,670,053	+		PFLU_RS25400	0.10	+0.0
5,670,053	+		PFLU_RS25400	0.10	+0.0
5,670,053	+		PFLU_RS25400	0.10	-1.6
5,670,053	+		PFLU_RS25400	0.10	-0.3
5,670,053	+		PFLU_RS25400	0.10	+1.2
5,670,053	+		PFLU_RS25400	0.10	+0.8
5,670,053	+		PFLU_RS25400	0.10	+1.6
5,670,053	+		PFLU_RS25400	0.10	+1.5
5,670,053	+		PFLU_RS25400	0.10	+0.4
5,670,053	+		PFLU_RS25400	0.10	-1.7
5,670,054	-		PFLU_RS25400	0.10	+1.0
5,670,054	-		PFLU_RS25400	0.10	+1.0
5,670,054	-		PFLU_RS25400	0.10	-0.3
5,670,054	-		PFLU_RS25400	0.10	+1.3
5,670,054	-		PFLU_RS25400	0.10	+0.7
5,670,054	-		PFLU_RS25400	0.10	+2.1
5,670,054	-		PFLU_RS25400	0.10	+0.1
5,670,054	-		PFLU_RS25400	0.10	+0.5
5,670,054	-		PFLU_RS25400	0.10	+2.3
5,670,054	-		PFLU_RS25400	0.10	-0.4
5,670,054	-		PFLU_RS25400	0.10	+1.2
5,670,054	-		PFLU_RS25400	0.10	-1.5
5,670,054	-		PFLU_RS25400	0.10	-2.1
5,670,054	-		PFLU_RS25400	0.10	+1.5
5,670,054	-		PFLU_RS25400	0.10	-1.3
5,670,054	-		PFLU_RS25400	0.10	+0.7
5,670,054	-		PFLU_RS25400	0.10	-1.7
5,670,054	-		PFLU_RS25400	0.10	+0.8
5,670,054	-		PFLU_RS25400	0.10	+0.8
5,670,054	-		PFLU_RS25400	0.10	+1.4
5,670,054	-		PFLU_RS25400	0.10	+0.4
5,670,093	+		PFLU_RS25400	0.12	+0.9
5,670,093	+		PFLU_RS25400	0.12	-2.0
5,670,093	+		PFLU_RS25400	0.12	-1.1
5,670,094	-		PFLU_RS25400	0.12	-0.7
5,670,094	-		PFLU_RS25400	0.12	-2.5
5,670,094	-		PFLU_RS25400	0.12	+0.3
5,670,094	-		PFLU_RS25400	0.12	-2.5
5,670,237	-		PFLU_RS25400	0.20	+1.5
5,670,237	-		PFLU_RS25400	0.20	+0.9
5,670,241	+		PFLU_RS25400	0.20	+0.5
5,670,404	+		PFLU_RS25400	0.28	+1.2
5,670,419	+		PFLU_RS25400	0.29	-1.6
5,670,420	-		PFLU_RS25400	0.29	+0.7
5,670,420	-		PFLU_RS25400	0.29	+0.6
5,670,420	-		PFLU_RS25400	0.29	+1.7
5,670,420	-		PFLU_RS25400	0.29	-1.8
5,670,478	+		PFLU_RS25400	0.32	+0.1
5,670,479	-		PFLU_RS25400	0.32	+0.2
5,670,479	-		PFLU_RS25400	0.32	-0.4
5,670,479	-		PFLU_RS25400	0.32	+0.0
5,670,479	-		PFLU_RS25400	0.32	+0.9
5,670,584	+		PFLU_RS25400	0.38	+1.3
5,670,584	+		PFLU_RS25400	0.38	-0.8
5,670,584	+		PFLU_RS25400	0.38	+0.3
5,670,584	+		PFLU_RS25400	0.38	+1.3
5,670,584	+		PFLU_RS25400	0.38	+2.1
5,670,584	+		PFLU_RS25400	0.38	-1.6
5,670,584	+		PFLU_RS25400	0.38	-0.4
5,670,585	-		PFLU_RS25400	0.38	-2.7
5,670,585	-		PFLU_RS25400	0.38	-1.6
5,670,585	-		PFLU_RS25400	0.38	-2.2
5,670,585	-		PFLU_RS25400	0.38	+0.9
5,670,672	-		PFLU_RS25400	0.42	+1.2
5,670,825	+		PFLU_RS25400	0.50	-1.6
5,670,826	-		PFLU_RS25400	0.50	-0.8
5,670,826	-		PFLU_RS25400	0.50	-2.3
5,670,946	+		PFLU_RS25400	0.57	+0.5
5,671,542	+		PFLU_RS25400	0.88	-0.5
5,671,542	+		PFLU_RS25400	0.88	+3.1
5,671,543	-		PFLU_RS25400	0.88	-2.7
5,671,564	+		PFLU_RS25400	0.89	+1.6
5,671,564	+		PFLU_RS25400	0.89	-1.2
5,671,688	-				+0.6
5,671,775	+				-1.4
5,671,881	+				+1.3
5,671,881	+				-1.2
5,672,005	-		PFLU_RS25405	0.28	-2.6
5,672,037	+		PFLU_RS25405	0.37	+0.2
5,672,038	-		PFLU_RS25405	0.37	+1.0
5,672,038	-		PFLU_RS25405	0.37	+0.5
5,672,038	-		PFLU_RS25405	0.37	-0.9
5,672,038	-		PFLU_RS25405	0.37	+2.3
5,672,138	+		PFLU_RS25405	0.64	-1.0
5,672,138	+		PFLU_RS25405	0.64	-0.1
5,672,139	-		PFLU_RS25405	0.64	+2.3
5,672,139	-		PFLU_RS25405	0.64	-0.5
5,672,139	-		PFLU_RS25405	0.64	+0.5
5,672,142	+		PFLU_RS25405	0.65	+1.9
5,672,142	+		PFLU_RS25405	0.65	-0.5
5,672,142	+		PFLU_RS25405	0.65	-0.5
5,672,142	+		PFLU_RS25405	0.65	-0.4
5,672,142	+		PFLU_RS25405	0.65	+1.1
5,672,143	-		PFLU_RS25405	0.66	+2.7
5,672,143	-		PFLU_RS25405	0.66	-1.3
5,672,205	+		PFLU_RS25405	0.82	-0.3
5,672,205	+		PFLU_RS25405	0.82	+1.5
5,672,205	+		PFLU_RS25405	0.82	-1.9
5,672,205	+		PFLU_RS25405	0.82	+2.1
5,672,205	+		PFLU_RS25405	0.82	-1.0
5,672,206	-		PFLU_RS25405	0.83	+1.1
5,672,206	-		PFLU_RS25405	0.83	-0.5
5,672,206	-		PFLU_RS25405	0.83	+0.1
5,672,261	+				-1.1
5,672,262	-				-2.5
5,672,285	+				+1.5
5,672,286	-				-0.5
5,672,286	-				+1.1
5,672,286	-				+0.8
5,672,300	+				+0.1
5,672,300	+				+0.7
5,672,300	+				+0.6
5,672,300	+				+0.8
5,672,301	-				-1.6
5,672,301	-				+0.1
5,672,301	-				-0.4
5,672,302	+				-1.6
5,672,302	+				+0.8
5,672,302	+				+0.2
5,672,302	+				-1.4
5,672,302	+				-1.8
5,672,302	+				+1.4
5,672,302	+				+0.8
5,672,302	+				-0.2
5,672,303	-				+0.8
5,672,303	-				+0.9
5,672,303	-				-1.0
5,672,303	-				-1.9
5,672,303	-				-0.2
5,672,303	-				-0.4
5,672,303	-				+1.4
5,672,303	-				+2.6
5,672,303	-				+0.0
5,672,303	-				-1.2
5,672,303	-				+1.3
5,672,385	-				+0.8
5,672,385	-				+1.5
5,672,385	-				+1.9
5,672,742	-		PFLU_RS25410	0.30	+0.4
5,672,744	+		PFLU_RS25410	0.30	-2.0
5,672,744	+		PFLU_RS25410	0.30	-0.7
5,672,744	+		PFLU_RS25410	0.30	-2.2
5,672,744	+		PFLU_RS25410	0.30	+1.5
5,672,745	-		PFLU_RS25410	0.30	-2.2
5,672,745	-		PFLU_RS25410	0.30	+1.3
5,672,745	-		PFLU_RS25410	0.30	+0.4