Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS23435 and PFLU_RS23440 are separated by 263 nucleotides PFLU_RS23440 and PFLU_RS23445 are separated by 76 nucleotides PFLU_RS23445 and PFLU_RS23450 overlap by 4 nucleotides
PFLU_RS23435: PFLU_RS23435 - diguanylate cyclase, at 5,263,918 to 5,264,976
_RS23435
PFLU_RS23440: PFLU_RS23440 - methyl-accepting chemotaxis protein, at 5,265,240 to 5,266,559
_RS23440
PFLU_RS23445: PFLU_RS23445 - DUF1003 domain-containing protein, at 5,266,636 to 5,267,154
_RS23445
PFLU_RS23450: PFLU_RS23450 - LysR family transcriptional regulator, at 5,267,151 to 5,268,029
_RS23450
Position (kb) 5265
5266
5267 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5264.256 kb on + strand, within PFLU_RS23435 at 5264.256 kb on + strand, within PFLU_RS23435 at 5264.257 kb on - strand, within PFLU_RS23435 at 5264.271 kb on - strand, within PFLU_RS23435 at 5264.291 kb on + strand, within PFLU_RS23435 at 5264.291 kb on + strand, within PFLU_RS23435 at 5264.292 kb on - strand, within PFLU_RS23435 at 5264.292 kb on - strand, within PFLU_RS23435 at 5264.362 kb on + strand, within PFLU_RS23435 at 5264.363 kb on - strand, within PFLU_RS23435 at 5264.363 kb on - strand, within PFLU_RS23435 at 5264.363 kb on - strand, within PFLU_RS23435 at 5264.389 kb on + strand, within PFLU_RS23435 at 5264.390 kb on - strand, within PFLU_RS23435 at 5264.390 kb on - strand, within PFLU_RS23435 at 5264.417 kb on - strand, within PFLU_RS23435 at 5264.622 kb on + strand, within PFLU_RS23435 at 5264.623 kb on - strand, within PFLU_RS23435 at 5264.623 kb on - strand, within PFLU_RS23435 at 5264.639 kb on + strand, within PFLU_RS23435 at 5264.651 kb on + strand, within PFLU_RS23435 at 5264.651 kb on + strand, within PFLU_RS23435 at 5264.651 kb on + strand, within PFLU_RS23435 at 5264.651 kb on + strand, within PFLU_RS23435 at 5264.651 kb on + strand, within PFLU_RS23435 at 5264.651 kb on + strand, within PFLU_RS23435 at 5264.651 kb on + strand, within PFLU_RS23435 at 5264.651 kb on + strand, within PFLU_RS23435 at 5264.652 kb on - strand, within PFLU_RS23435 at 5264.652 kb on - strand, within PFLU_RS23435 at 5264.652 kb on - strand, within PFLU_RS23435 at 5264.652 kb on - strand, within PFLU_RS23435 at 5264.652 kb on - strand, within PFLU_RS23435 at 5264.652 kb on - strand, within PFLU_RS23435 at 5264.652 kb on - strand, within PFLU_RS23435 at 5264.652 kb on - strand, within PFLU_RS23435 at 5264.794 kb on + strand, within PFLU_RS23435 at 5264.865 kb on + strand, within PFLU_RS23435 at 5264.866 kb on - strand, within PFLU_RS23435 at 5264.908 kb on + strand at 5264.908 kb on + strand at 5264.908 kb on + strand at 5264.908 kb on + strand at 5264.909 kb on - strand at 5264.909 kb on - strand at 5264.909 kb on - strand at 5264.909 kb on - strand at 5264.945 kb on + strand at 5264.945 kb on + strand at 5264.945 kb on + strand at 5264.945 kb on + strand at 5264.945 kb on + strand at 5264.946 kb on - strand at 5264.946 kb on - strand at 5264.946 kb on - strand at 5264.946 kb on - strand at 5264.946 kb on - strand at 5264.965 kb on + strand at 5264.965 kb on + strand at 5264.965 kb on + strand at 5264.966 kb on - strand at 5265.003 kb on + strand at 5265.032 kb on + strand at 5265.033 kb on - strand at 5265.033 kb on - strand at 5265.033 kb on - strand at 5265.033 kb on - strand at 5265.167 kb on + strand at 5265.167 kb on + strand at 5265.168 kb on - strand at 5265.174 kb on + strand at 5265.174 kb on + strand at 5265.174 kb on + strand at 5265.174 kb on + strand at 5265.175 kb on - strand at 5265.175 kb on - strand at 5265.175 kb on - strand at 5265.198 kb on - strand at 5265.244 kb on + strand at 5265.244 kb on + strand at 5265.245 kb on - strand at 5265.245 kb on - strand at 5265.257 kb on + strand at 5265.258 kb on - strand at 5265.258 kb on - strand at 5265.403 kb on - strand, within PFLU_RS23440 at 5265.474 kb on + strand, within PFLU_RS23440 at 5265.474 kb on + strand, within PFLU_RS23440 at 5265.474 kb on + strand, within PFLU_RS23440 at 5265.475 kb on - strand, within PFLU_RS23440 at 5265.475 kb on - strand, within PFLU_RS23440 at 5265.475 kb on - strand, within PFLU_RS23440 at 5265.475 kb on - strand, within PFLU_RS23440 at 5265.475 kb on - strand, within PFLU_RS23440 at 5265.573 kb on + strand, within PFLU_RS23440 at 5265.573 kb on + strand, within PFLU_RS23440 at 5265.573 kb on + strand, within PFLU_RS23440 at 5265.574 kb on - strand, within PFLU_RS23440 at 5265.574 kb on - strand, within PFLU_RS23440 at 5265.574 kb on - strand, within PFLU_RS23440 at 5265.574 kb on - strand, within PFLU_RS23440 at 5265.574 kb on - strand, within PFLU_RS23440 at 5265.607 kb on + strand, within PFLU_RS23440 at 5265.607 kb on + strand, within PFLU_RS23440 at 5265.607 kb on + strand, within PFLU_RS23440 at 5265.607 kb on + strand, within PFLU_RS23440 at 5265.608 kb on - strand, within PFLU_RS23440 at 5265.608 kb on - strand, within PFLU_RS23440 at 5265.608 kb on - strand, within PFLU_RS23440 at 5265.621 kb on + strand, within PFLU_RS23440 at 5265.621 kb on + strand, within PFLU_RS23440 at 5265.621 kb on + strand, within PFLU_RS23440 at 5265.622 kb on - strand, within PFLU_RS23440 at 5265.622 kb on - strand, within PFLU_RS23440 at 5265.622 kb on - strand, within PFLU_RS23440 at 5265.939 kb on + strand, within PFLU_RS23440 at 5265.939 kb on + strand, within PFLU_RS23440 at 5265.939 kb on + strand, within PFLU_RS23440 at 5265.939 kb on + strand, within PFLU_RS23440 at 5265.939 kb on + strand, within PFLU_RS23440 at 5265.939 kb on + strand, within PFLU_RS23440 at 5265.939 kb on + strand, within PFLU_RS23440 at 5265.940 kb on - strand, within PFLU_RS23440 at 5265.940 kb on - strand, within PFLU_RS23440 at 5265.940 kb on - strand, within PFLU_RS23440 at 5265.940 kb on - strand, within PFLU_RS23440 at 5265.940 kb on - strand, within PFLU_RS23440 at 5265.940 kb on - strand, within PFLU_RS23440 at 5265.940 kb on - strand, within PFLU_RS23440 at 5265.940 kb on - strand, within PFLU_RS23440 at 5265.940 kb on - strand, within PFLU_RS23440 at 5265.951 kb on + strand, within PFLU_RS23440 at 5265.952 kb on - strand, within PFLU_RS23440 at 5265.952 kb on - strand, within PFLU_RS23440 at 5266.053 kb on + strand, within PFLU_RS23440 at 5266.053 kb on + strand, within PFLU_RS23440 at 5266.594 kb on + strand at 5266.594 kb on + strand at 5266.594 kb on + strand at 5266.594 kb on + strand at 5266.594 kb on + strand at 5266.595 kb on - strand at 5266.595 kb on - strand at 5266.595 kb on - strand at 5266.595 kb on - strand at 5266.595 kb on - strand at 5266.595 kb on - strand at 5266.595 kb on - strand at 5266.595 kb on - strand at 5266.595 kb on - strand at 5266.596 kb on + strand at 5266.596 kb on + strand at 5266.596 kb on + strand at 5266.596 kb on + strand at 5266.596 kb on + strand at 5266.597 kb on - strand at 5266.611 kb on + strand at 5266.612 kb on - strand at 5266.612 kb on - strand at 5266.817 kb on + strand, within PFLU_RS23445 at 5266.852 kb on + strand, within PFLU_RS23445 at 5266.852 kb on + strand, within PFLU_RS23445 at 5267.103 kb on + strand at 5267.103 kb on + strand at 5267.103 kb on + strand at 5267.103 kb on + strand at 5267.103 kb on + strand at 5267.104 kb on - strand at 5267.104 kb on - strand at 5267.152 kb on + strand at 5267.153 kb on - strand at 5267.357 kb on + strand, within PFLU_RS23450 at 5267.357 kb on + strand, within PFLU_RS23450 at 5267.357 kb on + strand, within PFLU_RS23450 at 5267.357 kb on + strand, within PFLU_RS23450 at 5267.357 kb on + strand, within PFLU_RS23450 at 5267.357 kb on + strand, within PFLU_RS23450 at 5267.357 kb on + strand, within PFLU_RS23450 at 5267.357 kb on + strand, within PFLU_RS23450 at 5267.358 kb on - strand, within PFLU_RS23450 at 5267.358 kb on - strand, within PFLU_RS23450 at 5267.358 kb on - strand, within PFLU_RS23450 at 5267.358 kb on - strand, within PFLU_RS23450 at 5267.358 kb on - strand, within PFLU_RS23450 at 5267.358 kb on - strand, within PFLU_RS23450 at 5267.371 kb on + strand, within PFLU_RS23450 at 5267.371 kb on + strand, within PFLU_RS23450 at 5267.372 kb on - strand, within PFLU_RS23450 at 5267.482 kb on + strand, within PFLU_RS23450
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 5,264,256 + PFLU_RS23435 0.32 +1.0 5,264,256 + PFLU_RS23435 0.32 +2.0 5,264,257 - PFLU_RS23435 0.32 -1.5 5,264,271 - PFLU_RS23435 0.33 +2.7 5,264,291 + PFLU_RS23435 0.35 -0.7 5,264,291 + PFLU_RS23435 0.35 +1.3 5,264,292 - PFLU_RS23435 0.35 -1.4 5,264,292 - PFLU_RS23435 0.35 -2.1 5,264,362 + PFLU_RS23435 0.42 +0.7 5,264,363 - PFLU_RS23435 0.42 +1.9 5,264,363 - PFLU_RS23435 0.42 +2.1 5,264,363 - PFLU_RS23435 0.42 -0.3 5,264,389 + PFLU_RS23435 0.44 +0.9 5,264,390 - PFLU_RS23435 0.45 +2.2 5,264,390 - PFLU_RS23435 0.45 +0.7 5,264,417 - PFLU_RS23435 0.47 +0.3 5,264,622 + PFLU_RS23435 0.66 -0.1 5,264,623 - PFLU_RS23435 0.67 +1.4 5,264,623 - PFLU_RS23435 0.67 +0.7 5,264,639 + PFLU_RS23435 0.68 -1.4 5,264,651 + PFLU_RS23435 0.69 +3.9 5,264,651 + PFLU_RS23435 0.69 -2.1 5,264,651 + PFLU_RS23435 0.69 -0.3 5,264,651 + PFLU_RS23435 0.69 -0.5 5,264,651 + PFLU_RS23435 0.69 -0.5 5,264,651 + PFLU_RS23435 0.69 -0.2 5,264,651 + PFLU_RS23435 0.69 +0.2 5,264,651 + PFLU_RS23435 0.69 -0.5 5,264,652 - PFLU_RS23435 0.69 +0.1 5,264,652 - PFLU_RS23435 0.69 -0.5 5,264,652 - PFLU_RS23435 0.69 +1.4 5,264,652 - PFLU_RS23435 0.69 +0.7 5,264,652 - PFLU_RS23435 0.69 -1.0 5,264,652 - PFLU_RS23435 0.69 +0.9 5,264,652 - PFLU_RS23435 0.69 +1.6 5,264,652 - PFLU_RS23435 0.69 +0.2 5,264,794 + PFLU_RS23435 0.83 +2.7 5,264,865 + PFLU_RS23435 0.89 +0.0 5,264,866 - PFLU_RS23435 0.90 -2.1 5,264,908 + +1.3 5,264,908 + +0.6 5,264,908 + -0.4 5,264,908 + +1.3 5,264,909 - +0.7 5,264,909 - +1.3 5,264,909 - -0.2 5,264,909 - -3.3 5,264,945 + -0.3 5,264,945 + +1.6 5,264,945 + +1.8 5,264,945 + +0.2 5,264,945 + -0.5 5,264,946 - -0.3 5,264,946 - +3.1 5,264,946 - +1.5 5,264,946 - +0.9 5,264,946 - -2.0 5,264,965 + +0.1 5,264,965 + +1.7 5,264,965 + +2.0 5,264,966 - -0.2 5,265,003 + +0.7 5,265,032 + -0.0 5,265,033 - -0.5 5,265,033 - +1.5 5,265,033 - +0.7 5,265,033 - +0.5 5,265,167 + -2.6 5,265,167 + +3.0 5,265,168 - +1.9 5,265,174 + -0.9 5,265,174 + -1.3 5,265,174 + +0.5 5,265,174 + +1.1 5,265,175 - +1.5 5,265,175 - +1.2 5,265,175 - +1.1 5,265,198 - +0.9 5,265,244 + -0.9 5,265,244 + +1.5 5,265,245 - +0.2 5,265,245 - +1.1 5,265,257 + +0.6 5,265,258 - -2.9 5,265,258 - -0.5 5,265,403 - PFLU_RS23440 0.12 -3.0 5,265,474 + PFLU_RS23440 0.18 -0.5 5,265,474 + PFLU_RS23440 0.18 -1.4 5,265,474 + PFLU_RS23440 0.18 -2.1 5,265,475 - PFLU_RS23440 0.18 +0.9 5,265,475 - PFLU_RS23440 0.18 +0.0 5,265,475 - PFLU_RS23440 0.18 +0.3 5,265,475 - PFLU_RS23440 0.18 +2.5 5,265,475 - PFLU_RS23440 0.18 +1.4 5,265,573 + PFLU_RS23440 0.25 +0.4 5,265,573 + PFLU_RS23440 0.25 +2.3 5,265,573 + PFLU_RS23440 0.25 -3.3 5,265,574 - PFLU_RS23440 0.25 +0.0 5,265,574 - PFLU_RS23440 0.25 -0.1 5,265,574 - PFLU_RS23440 0.25 -2.0 5,265,574 - PFLU_RS23440 0.25 -1.0 5,265,574 - PFLU_RS23440 0.25 +0.3 5,265,607 + PFLU_RS23440 0.28 +0.9 5,265,607 + PFLU_RS23440 0.28 +0.2 5,265,607 + PFLU_RS23440 0.28 +0.9 5,265,607 + PFLU_RS23440 0.28 -0.5 5,265,608 - PFLU_RS23440 0.28 -2.4 5,265,608 - PFLU_RS23440 0.28 -2.4 5,265,608 - PFLU_RS23440 0.28 +2.3 5,265,621 + PFLU_RS23440 0.29 -0.3 5,265,621 + PFLU_RS23440 0.29 +0.5 5,265,621 + PFLU_RS23440 0.29 -1.4 5,265,622 - PFLU_RS23440 0.29 +0.0 5,265,622 - PFLU_RS23440 0.29 -1.8 5,265,622 - PFLU_RS23440 0.29 -2.2 5,265,939 + PFLU_RS23440 0.53 +0.0 5,265,939 + PFLU_RS23440 0.53 +0.5 5,265,939 + PFLU_RS23440 0.53 -2.6 5,265,939 + PFLU_RS23440 0.53 -1.0 5,265,939 + PFLU_RS23440 0.53 +0.7 5,265,939 + PFLU_RS23440 0.53 +1.2 5,265,939 + PFLU_RS23440 0.53 +2.4 5,265,940 - PFLU_RS23440 0.53 -0.4 5,265,940 - PFLU_RS23440 0.53 -2.7 5,265,940 - PFLU_RS23440 0.53 -0.5 5,265,940 - PFLU_RS23440 0.53 -0.3 5,265,940 - PFLU_RS23440 0.53 -0.3 5,265,940 - PFLU_RS23440 0.53 +1.1 5,265,940 - PFLU_RS23440 0.53 -2.0 5,265,940 - PFLU_RS23440 0.53 -0.8 5,265,940 - PFLU_RS23440 0.53 +0.2 5,265,951 + PFLU_RS23440 0.54 +1.1 5,265,952 - PFLU_RS23440 0.54 +0.6 5,265,952 - PFLU_RS23440 0.54 +1.1 5,266,053 + PFLU_RS23440 0.62 -0.7 5,266,053 + PFLU_RS23440 0.62 +1.0 5,266,594 + +1.3 5,266,594 + +2.6 5,266,594 + -1.6 5,266,594 + -0.5 5,266,594 + +0.6 5,266,595 - +1.6 5,266,595 - +0.2 5,266,595 - -1.6 5,266,595 - +1.3 5,266,595 - +1.6 5,266,595 - -1.2 5,266,595 - +1.0 5,266,595 - +0.0 5,266,595 - -2.2 5,266,596 + -1.3 5,266,596 + -1.6 5,266,596 + +0.2 5,266,596 + -0.4 5,266,596 + -2.0 5,266,597 - +2.1 5,266,611 + +0.6 5,266,612 - +2.7 5,266,612 - -0.7 5,266,817 + PFLU_RS23445 0.35 -0.5 5,266,852 + PFLU_RS23445 0.42 +0.0 5,266,852 + PFLU_RS23445 0.42 +2.3 5,267,103 + +1.3 5,267,103 + -1.0 5,267,103 + +0.9 5,267,103 + -2.5 5,267,103 + +1.6 5,267,104 - -2.8 5,267,104 - -1.0 5,267,152 + +0.4 5,267,153 - -0.2 5,267,357 + PFLU_RS23450 0.23 -1.5 5,267,357 + PFLU_RS23450 0.23 -0.3 5,267,357 + PFLU_RS23450 0.23 -1.8 5,267,357 + PFLU_RS23450 0.23 +0.7 5,267,357 + PFLU_RS23450 0.23 -0.5 5,267,357 + PFLU_RS23450 0.23 -1.1 5,267,357 + PFLU_RS23450 0.23 +0.4 5,267,357 + PFLU_RS23450 0.23 +1.4 5,267,358 - PFLU_RS23450 0.24 -1.2 5,267,358 - PFLU_RS23450 0.24 +1.6 5,267,358 - PFLU_RS23450 0.24 +0.4 5,267,358 - PFLU_RS23450 0.24 +0.7 5,267,358 - PFLU_RS23450 0.24 +1.7 5,267,358 - PFLU_RS23450 0.24 +1.0 5,267,371 + PFLU_RS23450 0.25 +0.5 5,267,371 + PFLU_RS23450 0.25 +0.7 5,267,372 - PFLU_RS23450 0.25 -1.1 5,267,482 + PFLU_RS23450 0.38 -0.5
Or see this region's nucleotide sequence