Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS23310

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
5,231,704	-		PFLU_RS23305	0.20	-0.9
5,231,786	-		PFLU_RS23305	0.28	-1.9
5,231,893	+		PFLU_RS23305	0.39	-2.7
5,231,893	+		PFLU_RS23305	0.39	+0.3
5,231,893	+		PFLU_RS23305	0.39	-1.7
5,231,893	+		PFLU_RS23305	0.39	-2.4
5,231,893	+		PFLU_RS23305	0.39	-1.8
5,231,894	-		PFLU_RS23305	0.39	-2.5
5,231,894	-		PFLU_RS23305	0.39	-1.8
5,231,894	-		PFLU_RS23305	0.39	-2.3
5,231,894	-		PFLU_RS23305	0.39	-1.0
5,231,894	-		PFLU_RS23305	0.39	-1.9
5,231,894	-		PFLU_RS23305	0.39	-2.6
5,231,894	-		PFLU_RS23305	0.39	-0.1
5,231,894	-		PFLU_RS23305	0.39	-2.6
5,231,894	-		PFLU_RS23305	0.39	-1.7
5,231,894	-		PFLU_RS23305	0.39	-0.6
5,231,894	-		PFLU_RS23305	0.39	-3.0
5,231,894	-		PFLU_RS23305	0.39	-2.4
5,231,894	-		PFLU_RS23305	0.39	-1.9
5,231,953	+		PFLU_RS23305	0.44	-1.7
5,232,089	+		PFLU_RS23305	0.58	-1.0
5,232,089	+		PFLU_RS23305	0.58	-1.7
5,232,093	+		PFLU_RS23305	0.58	-1.9
5,232,093	+		PFLU_RS23305	0.58	-2.5
5,232,093	+		PFLU_RS23305	0.58	+0.4
5,232,093	+		PFLU_RS23305	0.58	-1.5
5,232,094	-		PFLU_RS23305	0.58	+1.0
5,232,094	-		PFLU_RS23305	0.58	-2.7
5,232,094	-		PFLU_RS23305	0.58	-1.1
5,232,094	-		PFLU_RS23305	0.58	-1.3
5,232,221	-		PFLU_RS23305	0.70	-2.1
5,232,271	+		PFLU_RS23305	0.75	-1.4
5,232,271	+		PFLU_RS23305	0.75	-1.8
5,232,271	+		PFLU_RS23305	0.75	-2.1
5,232,271	+		PFLU_RS23305	0.75	-0.7
5,232,272	-		PFLU_RS23305	0.75	-0.3
5,232,272	-		PFLU_RS23305	0.75	-2.1
5,232,355	+		PFLU_RS23305	0.83	-1.8
5,232,356	-		PFLU_RS23305	0.84	-1.7
5,232,356	-		PFLU_RS23305	0.84	-1.8
5,232,508	-				-1.9
5,232,527	+				-3.0
5,232,527	+				+0.3
5,232,527	+				-0.9
5,232,527	+				-1.5
5,232,527	+				-1.7
5,232,527	+				-1.7
5,232,527	+				-1.3
5,232,527	+				-1.7
5,232,527	+				-1.1
5,232,527	+				-2.4
5,232,528	-				+2.1
5,232,528	-				-1.0
5,232,528	-				-0.5
5,232,528	-				-1.6
5,232,528	-				-1.3
5,232,528	-				-0.7
5,232,528	-				-0.2
5,232,528	-				-1.6
5,232,577	+				-0.3
5,232,667	+				+0.3
5,232,724	+		PFLU_RS23310	0.15	-1.3
5,232,724	+		PFLU_RS23310	0.15	-0.5
5,232,725	-		PFLU_RS23310	0.15	-2.9
5,232,847	+		PFLU_RS23310	0.27	-0.9
5,232,847	+		PFLU_RS23310	0.27	-2.0
5,232,847	+		PFLU_RS23310	0.27	-0.9
5,232,847	+		PFLU_RS23310	0.27	-0.9
5,232,847	+		PFLU_RS23310	0.27	-2.4
5,232,847	+		PFLU_RS23310	0.27	-2.3
5,232,847	+		PFLU_RS23310	0.27	-2.3
5,232,847	+		PFLU_RS23310	0.27	-2.1
5,232,847	+		PFLU_RS23310	0.27	-0.3
5,232,848	-		PFLU_RS23310	0.27	-1.0
5,232,848	-		PFLU_RS23310	0.27	-2.6
5,232,848	-		PFLU_RS23310	0.27	-2.1
5,232,848	-		PFLU_RS23310	0.27	-1.7
5,232,848	-		PFLU_RS23310	0.27	-1.8
5,232,848	-		PFLU_RS23310	0.27	-1.0
5,232,848	-		PFLU_RS23310	0.27	-1.9
5,232,848	-		PFLU_RS23310	0.27	-2.4
5,232,848	-		PFLU_RS23310	0.27	-2.4
5,232,955	+		PFLU_RS23310	0.37	-0.6
5,232,955	+		PFLU_RS23310	0.37	-2.0
5,232,955	+		PFLU_RS23310	0.37	-1.9
5,232,955	+		PFLU_RS23310	0.37	-1.6
5,232,956	-		PFLU_RS23310	0.37	-2.0
5,232,956	-		PFLU_RS23310	0.37	-2.4
5,232,956	-		PFLU_RS23310	0.37	-1.9
5,232,956	-		PFLU_RS23310	0.37	-2.0
5,232,956	-		PFLU_RS23310	0.37	-2.2
5,232,956	-		PFLU_RS23310	0.37	-1.0
5,232,992	+		PFLU_RS23310	0.41	-2.1
5,232,993	-		PFLU_RS23310	0.41	-3.1
5,233,030	+		PFLU_RS23310	0.45	-2.5
5,233,030	+		PFLU_RS23310	0.45	-1.0
5,233,030	+		PFLU_RS23310	0.45	-2.1
5,233,031	-		PFLU_RS23310	0.45	-1.4
5,233,096	+		PFLU_RS23310	0.51	-1.6
5,233,096	+		PFLU_RS23310	0.51	-1.5
5,233,216	+		PFLU_RS23310	0.63	-0.3
5,233,217	-		PFLU_RS23310	0.63	-3.4
5,233,333	+		PFLU_RS23310	0.74	-2.6
5,233,333	+		PFLU_RS23310	0.74	-0.7
5,233,333	+		PFLU_RS23310	0.74	-2.6
5,233,334	-		PFLU_RS23310	0.74	-1.1
5,233,421	-		PFLU_RS23310	0.83	-1.5
5,233,421	-		PFLU_RS23310	0.83	-0.3
5,233,421	-		PFLU_RS23310	0.83	-1.3
5,233,421	-		PFLU_RS23310	0.83	-1.1
5,233,482	-		PFLU_RS23310	0.89	-0.7
5,233,551	+				-1.6
5,233,551	+				+0.3
5,233,551	+				-1.5
5,233,552	-				-1.9
5,233,552	-				-0.3
5,233,552	-				-0.9
5,233,552	-				-0.9
5,233,608	+				-1.3
5,233,609	-				+1.3
5,233,609	-				-0.6
5,233,719	-				+1.3
5,233,734	-				+1.1
5,233,824	+				-1.7
5,233,824	+				-1.6
5,233,824	+				-1.2
5,233,824	+				-1.7
5,233,824	+				+1.7
5,233,824	+				-0.0
5,233,824	+				-0.9
5,233,824	+				-0.0
5,233,824	+				-1.9
5,233,825	-				+1.3
5,233,825	-				+0.4
5,233,825	-				+3.1
5,233,828	+				-1.2
5,233,828	+				-0.9
5,233,828	+				-0.7
5,233,828	+				-1.3
5,233,828	+				-1.0
5,233,829	-				+1.0
5,233,829	-				+2.0
5,233,829	-				-2.3
5,233,829	-				+1.9
5,233,829	-				+2.0
5,233,829	-				+1.9
5,234,065	+		PFLU_RS23315	0.19	+0.3
5,234,197	+		PFLU_RS23315	0.30	-1.1
5,234,198	-		PFLU_RS23315	0.30	+1.5
5,234,198	-		PFLU_RS23315	0.30	+0.8
5,234,198	-		PFLU_RS23315	0.30	-1.5
5,234,320	+		PFLU_RS23315	0.40	-1.7
5,234,329	+		PFLU_RS23315	0.41	-1.6
5,234,329	+		PFLU_RS23315	0.41	-2.1
5,234,330	-		PFLU_RS23315	0.41	+1.6
5,234,393	+		PFLU_RS23315	0.46	+0.9
5,234,429	-		PFLU_RS23315	0.49	+0.6
5,234,449	-		PFLU_RS23315	0.51	+2.4
5,234,531	+		PFLU_RS23315	0.57	-0.5
5,234,531	+		PFLU_RS23315	0.57	-0.6
5,234,531	+		PFLU_RS23315	0.57	-1.9
5,234,532	-		PFLU_RS23315	0.57	+1.7
5,234,532	-		PFLU_RS23315	0.57	+1.6
5,234,532	-		PFLU_RS23315	0.57	+0.8
5,234,533	+		PFLU_RS23315	0.58	-0.3
5,234,533	+		PFLU_RS23315	0.58	-1.0
5,234,534	-		PFLU_RS23315	0.58	+3.2
5,234,534	-		PFLU_RS23315	0.58	+1.3
5,234,534	-		PFLU_RS23315	0.58	+2.0
5,234,534	-		PFLU_RS23315	0.58	+0.3
5,234,534	-		PFLU_RS23315	0.58	+2.1
5,234,534	-		PFLU_RS23315	0.58	+1.6
5,234,534	-		PFLU_RS23315	0.58	+2.8
5,234,534	-		PFLU_RS23315	0.58	+2.4
5,234,561	+		PFLU_RS23315	0.60	+0.2
5,234,581	+		PFLU_RS23315	0.62	-2.3
5,234,582	-		PFLU_RS23315	0.62	+1.7