Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS22990

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS22985 and PFLU_RS22990 are separated by 136 nucleotidesPFLU_RS22990 and PFLU_RS22995 overlap by 4 nucleotidesPFLU_RS22995 and PFLU_RS23000 are separated by 70 nucleotides PFLU_RS22985: PFLU_RS22985 - allantoin permease, at 5,167,683 to 5,169,149 _RS22985 PFLU_RS22990: PFLU_RS22990 - ADP-ribosylglycohydrolase, at 5,169,286 to 5,170,287 _RS22990 PFLU_RS22995: PFLU_RS22995 - GntR family transcriptional regulator, at 5,170,284 to 5,170,997 _RS22995 PFLU_RS23000: PFLU_RS23000 - DUF1285 domain-containing protein, at 5,171,068 to 5,171,628 _RS23000 Position (kb) 5169 5170 5171Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5168.522 kb on + strand, within PFLU_RS22985at 5168.599 kb on + strand, within PFLU_RS22985at 5168.599 kb on + strand, within PFLU_RS22985at 5168.599 kb on + strand, within PFLU_RS22985at 5168.599 kb on + strand, within PFLU_RS22985at 5168.599 kb on + strand, within PFLU_RS22985at 5168.599 kb on + strand, within PFLU_RS22985at 5168.599 kb on + strand, within PFLU_RS22985at 5168.599 kb on + strand, within PFLU_RS22985at 5168.600 kb on + strand, within PFLU_RS22985at 5168.600 kb on - strand, within PFLU_RS22985at 5168.600 kb on - strand, within PFLU_RS22985at 5168.600 kb on - strand, within PFLU_RS22985at 5168.600 kb on - strand, within PFLU_RS22985at 5168.600 kb on - strand, within PFLU_RS22985at 5168.600 kb on - strand, within PFLU_RS22985at 5168.600 kb on - strand, within PFLU_RS22985at 5168.600 kb on - strand, within PFLU_RS22985at 5168.600 kb on - strand, within PFLU_RS22985at 5168.600 kb on - strand, within PFLU_RS22985at 5169.172 kb on + strandat 5169.172 kb on + strandat 5169.172 kb on + strandat 5169.172 kb on + strandat 5169.172 kb on + strandat 5169.172 kb on + strandat 5169.172 kb on + strandat 5169.172 kb on + strandat 5169.172 kb on + strandat 5169.173 kb on - strandat 5169.173 kb on - strandat 5169.173 kb on - strandat 5169.173 kb on - strandat 5169.173 kb on - strandat 5169.173 kb on - strandat 5169.173 kb on - strandat 5169.173 kb on - strandat 5169.173 kb on - strandat 5169.173 kb on - strandat 5169.173 kb on - strandat 5169.173 kb on - strandat 5169.236 kb on - strandat 5169.563 kb on + strand, within PFLU_RS22990at 5169.826 kb on - strand, within PFLU_RS22990at 5169.874 kb on - strand, within PFLU_RS22990at 5169.895 kb on - strand, within PFLU_RS22990at 5170.137 kb on + strand, within PFLU_RS22990at 5170.253 kb on + strandat 5170.254 kb on - strandat 5170.348 kb on + strandat 5170.349 kb on - strandat 5170.349 kb on - strandat 5170.349 kb on - strandat 5170.349 kb on - strandat 5170.349 kb on - strandat 5170.349 kb on - strandat 5170.375 kb on + strand, within PFLU_RS22995at 5170.375 kb on + strand, within PFLU_RS22995at 5170.375 kb on + strand, within PFLU_RS22995at 5170.375 kb on + strand, within PFLU_RS22995at 5170.376 kb on - strand, within PFLU_RS22995at 5170.376 kb on - strand, within PFLU_RS22995at 5170.376 kb on - strand, within PFLU_RS22995at 5170.376 kb on - strand, within PFLU_RS22995at 5170.382 kb on + strand, within PFLU_RS22995at 5170.382 kb on + strand, within PFLU_RS22995at 5170.489 kb on + strand, within PFLU_RS22995at 5170.816 kb on + strand, within PFLU_RS22995at 5170.816 kb on + strand, within PFLU_RS22995at 5170.816 kb on + strand, within PFLU_RS22995at 5170.816 kb on + strand, within PFLU_RS22995at 5170.817 kb on - strand, within PFLU_RS22995at 5170.817 kb on - strand, within PFLU_RS22995at 5170.817 kb on - strand, within PFLU_RS22995at 5170.817 kb on - strand, within PFLU_RS22995at 5171.041 kb on + strandat 5171.041 kb on + strandat 5171.168 kb on + strand, within PFLU_RS23000at 5171.168 kb on + strand, within PFLU_RS23000at 5171.169 kb on - strand, within PFLU_RS23000at 5171.215 kb on + strand, within PFLU_RS23000at 5171.215 kb on + strand, within PFLU_RS23000at 5171.215 kb on + strand, within PFLU_RS23000at 5171.216 kb on - strand, within PFLU_RS23000at 5171.216 kb on - strand, within PFLU_RS23000at 5171.216 kb on - strand, within PFLU_RS23000at 5171.219 kb on + strand, within PFLU_RS23000at 5171.219 kb on + strand, within PFLU_RS23000at 5171.220 kb on - strand, within PFLU_RS23000at 5171.220 kb on - strand, within PFLU_RS23000at 5171.220 kb on - strand, within PFLU_RS23000

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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5,168,522 + PFLU_RS22985 0.57 -0.3
5,168,599 + PFLU_RS22985 0.62 +1.3
5,168,599 + PFLU_RS22985 0.62 +0.1
5,168,599 + PFLU_RS22985 0.62 +0.1
5,168,599 + PFLU_RS22985 0.62 -0.5
5,168,599 + PFLU_RS22985 0.62 -0.8
5,168,599 + PFLU_RS22985 0.62 +1.1
5,168,599 + PFLU_RS22985 0.62 +2.7
5,168,599 + PFLU_RS22985 0.62 -0.4
5,168,600 + PFLU_RS22985 0.63 +0.3
5,168,600 - PFLU_RS22985 0.63 +1.1
5,168,600 - PFLU_RS22985 0.63 +0.2
5,168,600 - PFLU_RS22985 0.63 +1.9
5,168,600 - PFLU_RS22985 0.63 +1.6
5,168,600 - PFLU_RS22985 0.63 -0.5
5,168,600 - PFLU_RS22985 0.63 +2.0
5,168,600 - PFLU_RS22985 0.63 -0.5
5,168,600 - PFLU_RS22985 0.63 +0.3
5,168,600 - PFLU_RS22985 0.63 +3.3
5,168,600 - PFLU_RS22985 0.63 -0.8
5,169,172 + +0.2
5,169,172 + -2.2
5,169,172 + +1.6
5,169,172 + -0.4
5,169,172 + -0.8
5,169,172 + -1.3
5,169,172 + -1.7
5,169,172 + -1.0
5,169,172 + -0.2
5,169,173 - +2.3
5,169,173 - +1.9
5,169,173 - -1.8
5,169,173 - -1.4
5,169,173 - -0.1
5,169,173 - -0.5
5,169,173 - -1.6
5,169,173 - +2.0
5,169,173 - -2.2
5,169,173 - -0.3
5,169,173 - +1.2
5,169,173 - -0.9
5,169,236 - -0.9
5,169,563 + PFLU_RS22990 0.28 -2.1
5,169,826 - PFLU_RS22990 0.54 +0.9
5,169,874 - PFLU_RS22990 0.59 -1.6
5,169,895 - PFLU_RS22990 0.61 -0.3
5,170,137 + PFLU_RS22990 0.85 +0.6
5,170,253 + +0.7
5,170,254 - +1.1
5,170,348 + -2.3
5,170,349 - -0.1
5,170,349 - -2.0
5,170,349 - -2.1
5,170,349 - +0.7
5,170,349 - +0.6
5,170,349 - -0.0
5,170,375 + PFLU_RS22995 0.13 -2.4
5,170,375 + PFLU_RS22995 0.13 -2.0
5,170,375 + PFLU_RS22995 0.13 -1.2
5,170,375 + PFLU_RS22995 0.13 -0.9
5,170,376 - PFLU_RS22995 0.13 -0.9
5,170,376 - PFLU_RS22995 0.13 +0.4
5,170,376 - PFLU_RS22995 0.13 -0.8
5,170,376 - PFLU_RS22995 0.13 +0.5
5,170,382 + PFLU_RS22995 0.14 -0.0
5,170,382 + PFLU_RS22995 0.14 -1.5
5,170,489 + PFLU_RS22995 0.29 -0.8
5,170,816 + PFLU_RS22995 0.75 +0.7
5,170,816 + PFLU_RS22995 0.75 -0.4
5,170,816 + PFLU_RS22995 0.75 +1.1
5,170,816 + PFLU_RS22995 0.75 -0.6
5,170,817 - PFLU_RS22995 0.75 +0.1
5,170,817 - PFLU_RS22995 0.75 +0.5
5,170,817 - PFLU_RS22995 0.75 -2.3
5,170,817 - PFLU_RS22995 0.75 -0.9
5,171,041 + +2.1
5,171,041 + -0.4
5,171,168 + PFLU_RS23000 0.18 -0.8
5,171,168 + PFLU_RS23000 0.18 -0.5
5,171,169 - PFLU_RS23000 0.18 +0.3
5,171,215 + PFLU_RS23000 0.26 +2.5
5,171,215 + PFLU_RS23000 0.26 +0.5
5,171,215 + PFLU_RS23000 0.26 -1.3
5,171,216 - PFLU_RS23000 0.26 +2.3
5,171,216 - PFLU_RS23000 0.26 -0.0
5,171,216 - PFLU_RS23000 0.26 +0.8
5,171,219 + PFLU_RS23000 0.27 +0.8
5,171,219 + PFLU_RS23000 0.27 +0.5
5,171,220 - PFLU_RS23000 0.27 -1.2
5,171,220 - PFLU_RS23000 0.27 -2.1
5,171,220 - PFLU_RS23000 0.27 -2.1

Or see this region's nucleotide sequence