Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS22975 and PFLU_RS22980 are separated by 60 nucleotides PFLU_RS22980 and PFLU_RS22985 overlap by 8 nucleotides PFLU_RS22985 and PFLU_RS22990 are separated by 136 nucleotides
PFLU_RS22975: PFLU_RS22975 - hypothetical protein, at 5,166,446 to 5,166,712
_RS22975
PFLU_RS22980: PFLU_RS22980 - sugar kinase, at 5,166,773 to 5,167,690
_RS22980
PFLU_RS22985: PFLU_RS22985 - allantoin permease, at 5,167,683 to 5,169,149
_RS22985
PFLU_RS22990: PFLU_RS22990 - ADP-ribosylglycohydrolase, at 5,169,286 to 5,170,287
_RS22990
Position (kb) 5167
5168
5169
5170 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5166.710 kb on + strand at 5166.719 kb on + strand at 5166.719 kb on + strand at 5166.719 kb on + strand at 5166.719 kb on + strand at 5166.719 kb on + strand at 5166.719 kb on + strand at 5166.719 kb on + strand at 5166.720 kb on - strand at 5166.720 kb on - strand at 5166.720 kb on - strand at 5166.720 kb on - strand at 5166.720 kb on - strand at 5166.720 kb on - strand at 5166.727 kb on + strand at 5166.727 kb on + strand at 5166.727 kb on + strand at 5166.728 kb on - strand at 5166.728 kb on - strand at 5166.728 kb on - strand at 5166.728 kb on - strand at 5166.728 kb on - strand at 5166.728 kb on - strand at 5166.728 kb on - strand at 5166.728 kb on - strand at 5166.770 kb on + strand at 5166.770 kb on + strand at 5166.770 kb on + strand at 5166.770 kb on + strand at 5166.770 kb on + strand at 5166.770 kb on + strand at 5166.770 kb on + strand at 5166.770 kb on + strand at 5166.770 kb on + strand at 5166.771 kb on - strand at 5166.771 kb on - strand at 5166.771 kb on - strand at 5166.771 kb on - strand at 5166.771 kb on - strand at 5166.771 kb on - strand at 5166.774 kb on + strand at 5166.774 kb on + strand at 5166.774 kb on + strand at 5166.774 kb on + strand at 5166.775 kb on - strand at 5166.775 kb on - strand at 5166.775 kb on - strand at 5166.775 kb on - strand at 5166.974 kb on + strand, within PFLU_RS22980 at 5166.975 kb on - strand, within PFLU_RS22980 at 5166.975 kb on - strand, within PFLU_RS22980 at 5166.975 kb on - strand, within PFLU_RS22980 at 5166.975 kb on - strand, within PFLU_RS22980 at 5167.090 kb on + strand, within PFLU_RS22980 at 5167.090 kb on + strand, within PFLU_RS22980 at 5167.138 kb on + strand, within PFLU_RS22980 at 5167.138 kb on + strand, within PFLU_RS22980 at 5167.138 kb on + strand, within PFLU_RS22980 at 5167.139 kb on - strand, within PFLU_RS22980 at 5167.144 kb on + strand, within PFLU_RS22980 at 5167.145 kb on - strand, within PFLU_RS22980 at 5167.277 kb on + strand, within PFLU_RS22980 at 5167.277 kb on + strand, within PFLU_RS22980 at 5167.277 kb on + strand, within PFLU_RS22980 at 5167.277 kb on + strand, within PFLU_RS22980 at 5167.277 kb on + strand, within PFLU_RS22980 at 5167.277 kb on + strand, within PFLU_RS22980 at 5167.278 kb on - strand, within PFLU_RS22980 at 5167.278 kb on - strand, within PFLU_RS22980 at 5167.296 kb on + strand, within PFLU_RS22980 at 5167.296 kb on + strand, within PFLU_RS22980 at 5167.296 kb on + strand, within PFLU_RS22980 at 5167.296 kb on + strand, within PFLU_RS22980 at 5167.296 kb on + strand, within PFLU_RS22980 at 5167.296 kb on + strand, within PFLU_RS22980 at 5167.296 kb on + strand, within PFLU_RS22980 at 5167.296 kb on + strand, within PFLU_RS22980 at 5167.296 kb on + strand, within PFLU_RS22980 at 5167.296 kb on + strand, within PFLU_RS22980 at 5167.296 kb on + strand, within PFLU_RS22980 at 5167.297 kb on - strand, within PFLU_RS22980 at 5167.297 kb on - strand, within PFLU_RS22980 at 5167.297 kb on - strand, within PFLU_RS22980 at 5167.297 kb on - strand, within PFLU_RS22980 at 5167.297 kb on - strand, within PFLU_RS22980 at 5167.297 kb on - strand, within PFLU_RS22980 at 5167.297 kb on - strand, within PFLU_RS22980 at 5167.297 kb on - strand, within PFLU_RS22980 at 5167.297 kb on - strand, within PFLU_RS22980 at 5167.297 kb on - strand, within PFLU_RS22980 at 5167.297 kb on - strand, within PFLU_RS22980 at 5167.297 kb on - strand, within PFLU_RS22980 at 5167.302 kb on + strand, within PFLU_RS22980 at 5167.302 kb on + strand, within PFLU_RS22980 at 5167.302 kb on + strand, within PFLU_RS22980 at 5167.302 kb on + strand, within PFLU_RS22980 at 5167.302 kb on + strand, within PFLU_RS22980 at 5167.303 kb on - strand, within PFLU_RS22980 at 5167.303 kb on - strand, within PFLU_RS22980 at 5167.303 kb on - strand, within PFLU_RS22980 at 5167.303 kb on - strand, within PFLU_RS22980 at 5167.303 kb on - strand, within PFLU_RS22980 at 5167.303 kb on - strand, within PFLU_RS22980 at 5167.303 kb on - strand, within PFLU_RS22980 at 5167.303 kb on - strand, within PFLU_RS22980 at 5167.303 kb on - strand, within PFLU_RS22980 at 5167.303 kb on - strand, within PFLU_RS22980 at 5167.303 kb on - strand, within PFLU_RS22980 at 5167.303 kb on - strand, within PFLU_RS22980 at 5167.303 kb on - strand, within PFLU_RS22980 at 5167.524 kb on + strand, within PFLU_RS22980 at 5167.525 kb on - strand, within PFLU_RS22980 at 5167.525 kb on - strand, within PFLU_RS22980 at 5167.543 kb on + strand, within PFLU_RS22980 at 5167.562 kb on + strand, within PFLU_RS22980 at 5167.562 kb on + strand, within PFLU_RS22980 at 5167.562 kb on + strand, within PFLU_RS22980 at 5167.562 kb on + strand, within PFLU_RS22980 at 5167.563 kb on - strand, within PFLU_RS22980 at 5167.563 kb on - strand, within PFLU_RS22980 at 5167.563 kb on - strand, within PFLU_RS22980 at 5167.567 kb on + strand, within PFLU_RS22980 at 5167.633 kb on + strand at 5167.633 kb on + strand at 5167.634 kb on - strand at 5167.634 kb on - strand at 5167.634 kb on - strand at 5167.634 kb on - strand at 5167.684 kb on + strand at 5167.684 kb on + strand at 5167.685 kb on - strand at 5167.685 kb on - strand at 5167.685 kb on - strand at 5167.685 kb on - strand at 5167.744 kb on + strand at 5167.744 kb on + strand at 5167.744 kb on + strand at 5167.744 kb on + strand at 5167.744 kb on + strand at 5167.745 kb on - strand at 5167.934 kb on - strand, within PFLU_RS22985 at 5167.975 kb on + strand, within PFLU_RS22985 at 5167.975 kb on + strand, within PFLU_RS22985 at 5167.975 kb on + strand, within PFLU_RS22985 at 5167.975 kb on + strand, within PFLU_RS22985 at 5167.975 kb on + strand, within PFLU_RS22985 at 5167.975 kb on + strand, within PFLU_RS22985 at 5167.976 kb on - strand, within PFLU_RS22985 at 5167.976 kb on - strand, within PFLU_RS22985 at 5167.976 kb on - strand, within PFLU_RS22985 at 5167.978 kb on + strand, within PFLU_RS22985 at 5167.978 kb on + strand, within PFLU_RS22985 at 5167.978 kb on + strand, within PFLU_RS22985 at 5167.978 kb on + strand, within PFLU_RS22985 at 5167.979 kb on - strand, within PFLU_RS22985 at 5167.979 kb on - strand, within PFLU_RS22985 at 5167.979 kb on - strand, within PFLU_RS22985 at 5167.979 kb on - strand, within PFLU_RS22985 at 5168.024 kb on + strand, within PFLU_RS22985 at 5168.068 kb on + strand, within PFLU_RS22985 at 5168.068 kb on + strand, within PFLU_RS22985 at 5168.069 kb on - strand, within PFLU_RS22985 at 5168.069 kb on - strand, within PFLU_RS22985 at 5168.095 kb on + strand, within PFLU_RS22985 at 5168.095 kb on + strand, within PFLU_RS22985 at 5168.096 kb on - strand, within PFLU_RS22985 at 5168.096 kb on - strand, within PFLU_RS22985 at 5168.096 kb on - strand, within PFLU_RS22985 at 5168.096 kb on - strand, within PFLU_RS22985 at 5168.096 kb on - strand, within PFLU_RS22985 at 5168.096 kb on - strand, within PFLU_RS22985 at 5168.096 kb on - strand, within PFLU_RS22985 at 5168.191 kb on + strand, within PFLU_RS22985 at 5168.192 kb on - strand, within PFLU_RS22985 at 5168.192 kb on - strand, within PFLU_RS22985 at 5168.192 kb on - strand, within PFLU_RS22985 at 5168.192 kb on - strand, within PFLU_RS22985 at 5168.192 kb on - strand, within PFLU_RS22985 at 5168.192 kb on - strand, within PFLU_RS22985 at 5168.242 kb on + strand, within PFLU_RS22985 at 5168.243 kb on - strand, within PFLU_RS22985 at 5168.522 kb on + strand, within PFLU_RS22985 at 5168.599 kb on + strand, within PFLU_RS22985 at 5168.599 kb on + strand, within PFLU_RS22985 at 5168.599 kb on + strand, within PFLU_RS22985 at 5168.599 kb on + strand, within PFLU_RS22985 at 5168.599 kb on + strand, within PFLU_RS22985 at 5168.599 kb on + strand, within PFLU_RS22985 at 5168.599 kb on + strand, within PFLU_RS22985 at 5168.599 kb on + strand, within PFLU_RS22985 at 5168.600 kb on + strand, within PFLU_RS22985 at 5168.600 kb on - strand, within PFLU_RS22985 at 5168.600 kb on - strand, within PFLU_RS22985 at 5168.600 kb on - strand, within PFLU_RS22985 at 5168.600 kb on - strand, within PFLU_RS22985 at 5168.600 kb on - strand, within PFLU_RS22985 at 5168.600 kb on - strand, within PFLU_RS22985 at 5168.600 kb on - strand, within PFLU_RS22985 at 5168.600 kb on - strand, within PFLU_RS22985 at 5168.600 kb on - strand, within PFLU_RS22985 at 5168.600 kb on - strand, within PFLU_RS22985 at 5169.172 kb on + strand at 5169.172 kb on + strand at 5169.172 kb on + strand at 5169.172 kb on + strand at 5169.172 kb on + strand at 5169.172 kb on + strand at 5169.172 kb on + strand at 5169.172 kb on + strand at 5169.172 kb on + strand at 5169.173 kb on - strand at 5169.173 kb on - strand at 5169.173 kb on - strand at 5169.173 kb on - strand at 5169.173 kb on - strand at 5169.173 kb on - strand at 5169.173 kb on - strand at 5169.173 kb on - strand at 5169.173 kb on - strand at 5169.173 kb on - strand at 5169.173 kb on - strand at 5169.173 kb on - strand at 5169.236 kb on - strand at 5169.563 kb on + strand, within PFLU_RS22990 at 5169.826 kb on - strand, within PFLU_RS22990 at 5169.874 kb on - strand, within PFLU_RS22990 at 5169.895 kb on - strand, within PFLU_RS22990 at 5170.137 kb on + strand, within PFLU_RS22990
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 5,166,710 + +1.0 5,166,719 + -1.0 5,166,719 + -0.7 5,166,719 + -0.0 5,166,719 + +0.4 5,166,719 + -1.4 5,166,719 + +0.6 5,166,719 + -0.0 5,166,720 - -0.9 5,166,720 - +1.2 5,166,720 - -1.1 5,166,720 - -2.5 5,166,720 - +0.4 5,166,720 - +2.5 5,166,727 + +2.3 5,166,727 + +0.1 5,166,727 + -0.1 5,166,728 - -1.0 5,166,728 - -0.8 5,166,728 - +1.8 5,166,728 - +0.4 5,166,728 - -0.3 5,166,728 - -1.9 5,166,728 - +0.4 5,166,728 - +0.0 5,166,770 + -2.3 5,166,770 + -1.2 5,166,770 + -1.5 5,166,770 + +0.1 5,166,770 + -1.0 5,166,770 + -2.7 5,166,770 + +0.9 5,166,770 + +0.2 5,166,770 + +1.0 5,166,771 - +1.0 5,166,771 - -0.5 5,166,771 - -0.7 5,166,771 - +0.4 5,166,771 - +0.7 5,166,771 - +0.2 5,166,774 + -2.0 5,166,774 + +1.9 5,166,774 + -0.1 5,166,774 + -0.8 5,166,775 - -0.6 5,166,775 - -0.3 5,166,775 - -2.5 5,166,775 - +1.6 5,166,974 + PFLU_RS22980 0.22 -0.2 5,166,975 - PFLU_RS22980 0.22 -0.5 5,166,975 - PFLU_RS22980 0.22 -1.7 5,166,975 - PFLU_RS22980 0.22 -0.7 5,166,975 - PFLU_RS22980 0.22 +1.4 5,167,090 + PFLU_RS22980 0.35 +0.0 5,167,090 + PFLU_RS22980 0.35 -1.1 5,167,138 + PFLU_RS22980 0.40 -0.5 5,167,138 + PFLU_RS22980 0.40 +0.1 5,167,138 + PFLU_RS22980 0.40 -0.0 5,167,139 - PFLU_RS22980 0.40 +1.1 5,167,144 + PFLU_RS22980 0.40 -1.4 5,167,145 - PFLU_RS22980 0.41 +1.1 5,167,277 + PFLU_RS22980 0.55 +0.8 5,167,277 + PFLU_RS22980 0.55 +0.2 5,167,277 + PFLU_RS22980 0.55 -2.5 5,167,277 + PFLU_RS22980 0.55 -0.7 5,167,277 + PFLU_RS22980 0.55 -1.7 5,167,277 + PFLU_RS22980 0.55 -0.5 5,167,278 - PFLU_RS22980 0.55 -0.2 5,167,278 - PFLU_RS22980 0.55 -0.4 5,167,296 + PFLU_RS22980 0.57 +1.4 5,167,296 + PFLU_RS22980 0.57 -2.2 5,167,296 + PFLU_RS22980 0.57 +1.1 5,167,296 + PFLU_RS22980 0.57 +3.5 5,167,296 + PFLU_RS22980 0.57 -1.6 5,167,296 + PFLU_RS22980 0.57 -0.9 5,167,296 + PFLU_RS22980 0.57 +0.2 5,167,296 + PFLU_RS22980 0.57 -0.7 5,167,296 + PFLU_RS22980 0.57 +1.1 5,167,296 + PFLU_RS22980 0.57 -0.7 5,167,296 + PFLU_RS22980 0.57 -1.6 5,167,297 - PFLU_RS22980 0.57 -1.1 5,167,297 - PFLU_RS22980 0.57 -2.8 5,167,297 - PFLU_RS22980 0.57 -0.5 5,167,297 - PFLU_RS22980 0.57 +0.1 5,167,297 - PFLU_RS22980 0.57 -0.7 5,167,297 - PFLU_RS22980 0.57 -0.0 5,167,297 - PFLU_RS22980 0.57 -0.0 5,167,297 - PFLU_RS22980 0.57 -1.1 5,167,297 - PFLU_RS22980 0.57 -0.2 5,167,297 - PFLU_RS22980 0.57 +0.6 5,167,297 - PFLU_RS22980 0.57 +1.3 5,167,297 - PFLU_RS22980 0.57 -1.0 5,167,302 + PFLU_RS22980 0.58 -0.3 5,167,302 + PFLU_RS22980 0.58 -0.8 5,167,302 + PFLU_RS22980 0.58 +0.4 5,167,302 + PFLU_RS22980 0.58 +3.8 5,167,302 + PFLU_RS22980 0.58 +0.8 5,167,303 - PFLU_RS22980 0.58 -0.8 5,167,303 - PFLU_RS22980 0.58 -0.3 5,167,303 - PFLU_RS22980 0.58 +3.6 5,167,303 - PFLU_RS22980 0.58 +0.7 5,167,303 - PFLU_RS22980 0.58 +0.3 5,167,303 - PFLU_RS22980 0.58 +1.5 5,167,303 - PFLU_RS22980 0.58 +2.6 5,167,303 - PFLU_RS22980 0.58 +2.9 5,167,303 - PFLU_RS22980 0.58 +0.7 5,167,303 - PFLU_RS22980 0.58 +1.0 5,167,303 - PFLU_RS22980 0.58 -1.7 5,167,303 - PFLU_RS22980 0.58 +1.0 5,167,303 - PFLU_RS22980 0.58 +0.6 5,167,524 + PFLU_RS22980 0.82 -0.4 5,167,525 - PFLU_RS22980 0.82 -2.2 5,167,525 - PFLU_RS22980 0.82 +0.4 5,167,543 + PFLU_RS22980 0.84 +0.8 5,167,562 + PFLU_RS22980 0.86 -0.8 5,167,562 + PFLU_RS22980 0.86 +1.3 5,167,562 + PFLU_RS22980 0.86 +0.6 5,167,562 + PFLU_RS22980 0.86 -1.8 5,167,563 - PFLU_RS22980 0.86 +1.1 5,167,563 - PFLU_RS22980 0.86 -0.0 5,167,563 - PFLU_RS22980 0.86 -2.5 5,167,567 + PFLU_RS22980 0.86 -2.3 5,167,633 + -2.0 5,167,633 + +0.3 5,167,634 - -1.0 5,167,634 - +0.9 5,167,634 - +2.0 5,167,634 - -0.9 5,167,684 + +1.4 5,167,684 + +1.4 5,167,685 - +0.0 5,167,685 - +0.6 5,167,685 - +0.8 5,167,685 - -0.2 5,167,744 + +0.4 5,167,744 + -1.0 5,167,744 + +0.3 5,167,744 + -1.2 5,167,744 + -0.9 5,167,745 - -0.7 5,167,934 - PFLU_RS22985 0.17 -0.9 5,167,975 + PFLU_RS22985 0.20 +0.2 5,167,975 + PFLU_RS22985 0.20 -0.6 5,167,975 + PFLU_RS22985 0.20 -2.0 5,167,975 + PFLU_RS22985 0.20 -1.7 5,167,975 + PFLU_RS22985 0.20 +0.3 5,167,975 + PFLU_RS22985 0.20 -0.0 5,167,976 - PFLU_RS22985 0.20 +0.9 5,167,976 - PFLU_RS22985 0.20 -1.0 5,167,976 - PFLU_RS22985 0.20 -0.9 5,167,978 + PFLU_RS22985 0.20 +1.0 5,167,978 + PFLU_RS22985 0.20 -2.7 5,167,978 + PFLU_RS22985 0.20 -0.1 5,167,978 + PFLU_RS22985 0.20 +0.2 5,167,979 - PFLU_RS22985 0.20 +1.6 5,167,979 - PFLU_RS22985 0.20 -1.0 5,167,979 - PFLU_RS22985 0.20 -1.8 5,167,979 - PFLU_RS22985 0.20 +0.2 5,168,024 + PFLU_RS22985 0.23 +1.0 5,168,068 + PFLU_RS22985 0.26 -0.0 5,168,068 + PFLU_RS22985 0.26 +1.2 5,168,069 - PFLU_RS22985 0.26 +0.1 5,168,069 - PFLU_RS22985 0.26 +1.3 5,168,095 + PFLU_RS22985 0.28 +1.7 5,168,095 + PFLU_RS22985 0.28 -0.2 5,168,096 - PFLU_RS22985 0.28 +2.3 5,168,096 - PFLU_RS22985 0.28 +0.1 5,168,096 - PFLU_RS22985 0.28 +1.1 5,168,096 - PFLU_RS22985 0.28 +1.3 5,168,096 - PFLU_RS22985 0.28 -0.3 5,168,096 - PFLU_RS22985 0.28 +0.8 5,168,096 - PFLU_RS22985 0.28 -1.2 5,168,191 + PFLU_RS22985 0.35 +1.2 5,168,192 - PFLU_RS22985 0.35 +2.1 5,168,192 - PFLU_RS22985 0.35 -0.3 5,168,192 - PFLU_RS22985 0.35 +1.4 5,168,192 - PFLU_RS22985 0.35 -0.5 5,168,192 - PFLU_RS22985 0.35 +0.7 5,168,192 - PFLU_RS22985 0.35 -1.2 5,168,242 + PFLU_RS22985 0.38 +0.1 5,168,243 - PFLU_RS22985 0.38 +2.1 5,168,522 + PFLU_RS22985 0.57 -0.3 5,168,599 + PFLU_RS22985 0.62 +1.3 5,168,599 + PFLU_RS22985 0.62 +0.1 5,168,599 + PFLU_RS22985 0.62 +0.1 5,168,599 + PFLU_RS22985 0.62 -0.5 5,168,599 + PFLU_RS22985 0.62 -0.8 5,168,599 + PFLU_RS22985 0.62 +1.1 5,168,599 + PFLU_RS22985 0.62 +2.7 5,168,599 + PFLU_RS22985 0.62 -0.4 5,168,600 + PFLU_RS22985 0.63 +0.3 5,168,600 - PFLU_RS22985 0.63 +1.1 5,168,600 - PFLU_RS22985 0.63 +0.2 5,168,600 - PFLU_RS22985 0.63 +1.9 5,168,600 - PFLU_RS22985 0.63 +1.6 5,168,600 - PFLU_RS22985 0.63 -0.5 5,168,600 - PFLU_RS22985 0.63 +2.0 5,168,600 - PFLU_RS22985 0.63 -0.5 5,168,600 - PFLU_RS22985 0.63 +0.3 5,168,600 - PFLU_RS22985 0.63 +3.3 5,168,600 - PFLU_RS22985 0.63 -0.8 5,169,172 + +0.2 5,169,172 + -2.2 5,169,172 + +1.6 5,169,172 + -0.4 5,169,172 + -0.8 5,169,172 + -1.3 5,169,172 + -1.7 5,169,172 + -1.0 5,169,172 + -0.2 5,169,173 - +2.3 5,169,173 - +1.9 5,169,173 - -1.8 5,169,173 - -1.4 5,169,173 - -0.1 5,169,173 - -0.5 5,169,173 - -1.6 5,169,173 - +2.0 5,169,173 - -2.2 5,169,173 - -0.3 5,169,173 - +1.2 5,169,173 - -0.9 5,169,236 - -0.9 5,169,563 + PFLU_RS22990 0.28 -2.1 5,169,826 - PFLU_RS22990 0.54 +0.9 5,169,874 - PFLU_RS22990 0.59 -1.6 5,169,895 - PFLU_RS22990 0.61 -0.3 5,170,137 + PFLU_RS22990 0.85 +0.6
Or see this region's nucleotide sequence