Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS22125

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
4,977,060	+				+1.9
4,977,060	+				+2.1
4,977,060	+				+0.8
4,977,061	-				+1.0
4,977,061	-				+0.3
4,977,061	-				-1.8
4,977,061	-				+0.4
4,977,081	-				+1.0
4,977,083	+				-0.1
4,977,083	+				+2.9
4,977,084	-				+1.1
4,977,084	-				-1.0
4,977,320	+		PFLU_RS22120	0.22	-0.9
4,977,321	-		PFLU_RS22120	0.22	+2.1
4,977,435	-		PFLU_RS22120	0.34	-1.4
4,977,459	+		PFLU_RS22120	0.37	+0.9
4,977,459	+		PFLU_RS22120	0.37	-0.9
4,977,459	+		PFLU_RS22120	0.37	+1.0
4,977,459	+		PFLU_RS22120	0.37	-0.3
4,977,459	+		PFLU_RS22120	0.37	+1.3
4,977,459	+		PFLU_RS22120	0.37	-0.3
4,977,459	+		PFLU_RS22120	0.37	-2.8
4,977,459	+		PFLU_RS22120	0.37	+0.8
4,977,460	-		PFLU_RS22120	0.37	-0.9
4,977,460	-		PFLU_RS22120	0.37	-0.6
4,977,460	-		PFLU_RS22120	0.37	-0.4
4,977,460	-		PFLU_RS22120	0.37	+0.1
4,977,460	-		PFLU_RS22120	0.37	+0.2
4,977,460	-		PFLU_RS22120	0.37	-3.3
4,977,460	-		PFLU_RS22120	0.37	+1.1
4,977,460	-		PFLU_RS22120	0.37	-0.3
4,977,460	-		PFLU_RS22120	0.37	-1.0
4,977,460	-		PFLU_RS22120	0.37	-1.6
4,977,460	-		PFLU_RS22120	0.37	-0.2
4,977,580	+		PFLU_RS22120	0.49	+0.3
4,977,580	+		PFLU_RS22120	0.49	+0.8
4,977,580	+		PFLU_RS22120	0.49	+1.3
4,977,580	+		PFLU_RS22120	0.49	+0.1
4,977,580	+		PFLU_RS22120	0.49	+1.5
4,977,580	+		PFLU_RS22120	0.49	-2.8
4,977,580	+		PFLU_RS22120	0.49	+0.9
4,977,580	+		PFLU_RS22120	0.49	+1.0
4,977,580	+		PFLU_RS22120	0.49	+1.1
4,977,580	+		PFLU_RS22120	0.49	-1.0
4,977,580	+		PFLU_RS22120	0.49	-0.0
4,977,580	+		PFLU_RS22120	0.49	+1.1
4,977,580	+		PFLU_RS22120	0.49	-1.3
4,977,581	-		PFLU_RS22120	0.50	+1.3
4,977,581	-		PFLU_RS22120	0.50	+1.3
4,977,581	-		PFLU_RS22120	0.50	+1.7
4,977,581	-		PFLU_RS22120	0.50	-2.3
4,977,581	-		PFLU_RS22120	0.50	-0.7
4,977,581	-		PFLU_RS22120	0.50	-1.4
4,977,581	-		PFLU_RS22120	0.50	-2.3
4,977,581	-		PFLU_RS22120	0.50	-0.0
4,977,581	-		PFLU_RS22120	0.50	+1.7
4,977,581	-		PFLU_RS22120	0.50	+0.7
4,977,581	-		PFLU_RS22120	0.50	+0.7
4,977,581	-		PFLU_RS22120	0.50	-0.8
4,977,581	-		PFLU_RS22120	0.50	+3.1
4,977,581	-		PFLU_RS22120	0.50	+1.8
4,977,581	-		PFLU_RS22120	0.50	+1.0
4,977,581	-		PFLU_RS22120	0.50	+0.8
4,977,581	-		PFLU_RS22120	0.50	+0.2
4,977,581	-		PFLU_RS22120	0.50	-2.0
4,977,581	-		PFLU_RS22120	0.50	+0.9
4,977,581	-		PFLU_RS22120	0.50	-1.4
4,977,581	-		PFLU_RS22120	0.50	-2.0
4,977,581	-		PFLU_RS22120	0.50	+0.3
4,977,686	+		PFLU_RS22120	0.61	-1.8
4,977,686	+		PFLU_RS22120	0.61	+4.9
4,977,687	-		PFLU_RS22120	0.61	-0.3
4,977,687	-		PFLU_RS22120	0.61	-0.7
4,977,687	-		PFLU_RS22120	0.61	-0.1
4,977,687	-		PFLU_RS22120	0.61	+1.9
4,977,815	+		PFLU_RS22120	0.74	+1.0
4,977,815	+		PFLU_RS22120	0.74	-1.4
4,977,816	-		PFLU_RS22120	0.74	-2.5
4,977,816	-		PFLU_RS22120	0.74	-1.5
4,977,974	+				-1.2
4,978,019	+				+3.7
4,978,020	-				-0.5
4,978,035	+				+1.1
4,978,035	+				-0.2
4,978,035	+				+2.3
4,978,132	+		PFLU_RS22125	0.17	+1.8
4,978,132	+		PFLU_RS22125	0.17	+1.6
4,978,133	-		PFLU_RS22125	0.17	-0.3
4,978,171	+		PFLU_RS22125	0.26	+1.9
4,978,171	+		PFLU_RS22125	0.26	+1.9
4,978,171	+		PFLU_RS22125	0.26	+1.8
4,978,171	+		PFLU_RS22125	0.26	+1.5
4,978,171	+		PFLU_RS22125	0.26	-0.6
4,978,171	+		PFLU_RS22125	0.26	-0.2
4,978,207	+		PFLU_RS22125	0.35	+1.8
4,978,208	-		PFLU_RS22125	0.35	-1.0
4,978,509	+				-1.8
4,978,509	+				-2.1
4,978,510	-				-0.4
4,978,512	+				-1.8
4,978,512	+				-0.4
4,978,513	-				+1.0
4,978,513	-				-0.1
4,978,524	+				+0.9
4,978,524	+				-1.2
4,978,524	+				+1.5
4,978,524	+				-1.8
4,978,524	+				+1.6
4,978,524	+				+0.3
4,978,525	-				+1.6
4,978,542	-				-1.0
4,978,957	+		PFLU_RS22130	0.31	+0.3
4,978,980	-		PFLU_RS22130	0.33	-2.4
4,978,980	-		PFLU_RS22130	0.33	-0.2
4,978,980	-		PFLU_RS22130	0.33	+0.8
4,978,996	+		PFLU_RS22130	0.34	-0.1
4,978,996	+		PFLU_RS22130	0.34	+3.2
4,978,997	-		PFLU_RS22130	0.34	+1.4
4,978,997	-		PFLU_RS22130	0.34	-2.2
4,978,997	-		PFLU_RS22130	0.34	-0.4
4,979,114	+		PFLU_RS22130	0.42	-0.2
4,979,115	-		PFLU_RS22130	0.42	-0.4
4,979,115	-		PFLU_RS22130	0.42	+0.9
4,979,115	-		PFLU_RS22130	0.42	+2.1
4,979,115	-		PFLU_RS22130	0.42	-0.9
4,979,218	+		PFLU_RS22130	0.49	-0.8
4,979,218	+		PFLU_RS22130	0.49	+1.2
4,979,218	+		PFLU_RS22130	0.49	-0.2
4,979,218	+		PFLU_RS22130	0.49	-1.8
4,979,218	+		PFLU_RS22130	0.49	-1.6
4,979,218	+		PFLU_RS22130	0.49	+1.0
4,979,219	-		PFLU_RS22130	0.49	-0.9
4,979,219	-		PFLU_RS22130	0.49	-2.6
4,979,344	+		PFLU_RS22130	0.58	+0.9
4,979,344	+		PFLU_RS22130	0.58	+0.9
4,979,344	+		PFLU_RS22130	0.58	-1.3
4,979,344	+		PFLU_RS22130	0.58	+0.6
4,979,345	-		PFLU_RS22130	0.58	+0.8
4,979,345	-		PFLU_RS22130	0.58	-2.6
4,979,345	-		PFLU_RS22130	0.58	+0.1
4,979,345	-		PFLU_RS22130	0.58	-0.7
4,979,345	-		PFLU_RS22130	0.58	+0.6
4,979,345	-		PFLU_RS22130	0.58	-2.8
4,979,345	-		PFLU_RS22130	0.58	+0.1
4,979,345	-		PFLU_RS22130	0.58	+1.6
4,979,358	+		PFLU_RS22130	0.59	-1.1
4,979,358	+		PFLU_RS22130	0.59	+0.3
4,979,358	+		PFLU_RS22130	0.59	-1.6
4,979,358	+		PFLU_RS22130	0.59	-1.7
4,979,358	+		PFLU_RS22130	0.59	-1.6
4,979,358	+		PFLU_RS22130	0.59	+1.1
4,979,358	+		PFLU_RS22130	0.59	+2.3
4,979,358	+		PFLU_RS22130	0.59	+3.3
4,979,358	+		PFLU_RS22130	0.59	-1.8
4,979,359	-		PFLU_RS22130	0.59	-1.0
4,979,359	-		PFLU_RS22130	0.59	-1.8
4,979,359	-		PFLU_RS22130	0.59	+0.1
4,979,359	-		PFLU_RS22130	0.59	+1.9
4,979,362	+		PFLU_RS22130	0.59	-0.1
4,979,362	+		PFLU_RS22130	0.59	+0.5
4,979,362	+		PFLU_RS22130	0.59	+0.4
4,979,362	+		PFLU_RS22130	0.59	+1.2
4,979,362	+		PFLU_RS22130	0.59	+2.8
4,979,362	+		PFLU_RS22130	0.59	+1.6
4,979,362	+		PFLU_RS22130	0.59	+1.8
4,979,362	+		PFLU_RS22130	0.59	-1.8
4,979,362	+		PFLU_RS22130	0.59	+0.1
4,979,362	+		PFLU_RS22130	0.59	+0.7
4,979,362	+		PFLU_RS22130	0.59	-1.0
4,979,362	+		PFLU_RS22130	0.59	+0.6
4,979,362	+		PFLU_RS22130	0.59	-0.4
4,979,362	+		PFLU_RS22130	0.59	+0.2
4,979,362	+		PFLU_RS22130	0.59	+2.0
4,979,362	+		PFLU_RS22130	0.59	+0.1
4,979,362	+		PFLU_RS22130	0.59	+1.2
4,979,362	+		PFLU_RS22130	0.59	-2.1
4,979,362	+		PFLU_RS22130	0.59	-0.2
4,979,362	+		PFLU_RS22130	0.59	+1.4
4,979,362	+		PFLU_RS22130	0.59	+0.1
4,979,362	+		PFLU_RS22130	0.59	+1.4
4,979,363	-		PFLU_RS22130	0.59	+1.5
4,979,363	-		PFLU_RS22130	0.59	+0.8
4,979,363	-		PFLU_RS22130	0.59	+2.7
4,979,363	-		PFLU_RS22130	0.59	+2.1
4,979,363	-		PFLU_RS22130	0.59	-0.3
4,979,363	-		PFLU_RS22130	0.59	+1.0
4,979,363	-		PFLU_RS22130	0.59	-2.6
4,979,363	-		PFLU_RS22130	0.59	-1.0
4,979,363	-		PFLU_RS22130	0.59	+1.0
4,979,363	-		PFLU_RS22130	0.59	+0.4
4,979,363	-		PFLU_RS22130	0.59	-1.8
4,979,363	-		PFLU_RS22130	0.59	-1.2
4,979,363	-		PFLU_RS22130	0.59	-0.0
4,979,363	-		PFLU_RS22130	0.59	+1.4
4,979,363	-		PFLU_RS22130	0.59	+0.3
4,979,363	-		PFLU_RS22130	0.59	-1.4
4,979,363	-		PFLU_RS22130	0.59	-2.1
4,979,363	-		PFLU_RS22130	0.59	+0.1
4,979,363	-		PFLU_RS22130	0.59	+0.9
4,979,363	-		PFLU_RS22130	0.59	-1.2
4,979,363	-		PFLU_RS22130	0.59	-1.8
4,979,461	+		PFLU_RS22130	0.66	-0.4
4,979,461	+		PFLU_RS22130	0.66	-0.7
4,979,461	+		PFLU_RS22130	0.66	+2.6
4,979,461	+		PFLU_RS22130	0.66	+2.0
4,979,461	+		PFLU_RS22130	0.66	+1.3
4,979,461	+		PFLU_RS22130	0.66	-0.2
4,979,461	+		PFLU_RS22130	0.66	+1.8
4,979,462	-		PFLU_RS22130	0.66	+1.6
4,979,462	-		PFLU_RS22130	0.66	-3.2