Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS15505

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
3,470,605	-				-0.1
3,470,623	+				+0.1
3,470,623	+				-0.0
3,470,623	+				-1.8
3,470,624	-				-0.0
3,470,644	+				+2.7
3,470,644	+				+0.4
3,470,644	+				-0.4
3,470,644	+				-2.0
3,470,644	+				-2.0
3,470,645	-				-0.0
3,470,645	-				-1.6
3,470,645	-				+2.2
3,470,645	-				+1.6
3,470,645	-				+0.8
3,470,724	+		PFLU_RS15500	0.14	-2.5
3,470,724	+		PFLU_RS15500	0.14	+2.1
3,470,725	-		PFLU_RS15500	0.14	-2.0
3,470,725	-		PFLU_RS15500	0.14	-0.6
3,470,725	-		PFLU_RS15500	0.14	+1.8
3,470,747	-		PFLU_RS15500	0.17	+0.3
3,470,811	+		PFLU_RS15500	0.24	-0.4
3,470,811	+		PFLU_RS15500	0.24	+2.3
3,470,811	+		PFLU_RS15500	0.24	-2.4
3,470,811	+		PFLU_RS15500	0.24	-1.6
3,470,811	+		PFLU_RS15500	0.24	+0.2
3,470,811	+		PFLU_RS15500	0.24	+0.7
3,470,907	+		PFLU_RS15500	0.35	+0.5
3,470,907	+		PFLU_RS15500	0.35	-2.8
3,470,907	+		PFLU_RS15500	0.35	+0.1
3,470,908	-		PFLU_RS15500	0.35	-1.3
3,470,908	-		PFLU_RS15500	0.35	-1.8
3,470,908	-		PFLU_RS15500	0.35	+1.5
3,470,908	-		PFLU_RS15500	0.35	+1.7
3,470,908	-		PFLU_RS15500	0.35	-0.0
3,471,060	+		PFLU_RS15500	0.53	+2.2
3,471,060	+		PFLU_RS15500	0.53	-1.4
3,471,060	+		PFLU_RS15500	0.53	-2.4
3,471,060	+		PFLU_RS15500	0.53	-1.1
3,471,061	-		PFLU_RS15500	0.53	+0.6
3,471,061	-		PFLU_RS15500	0.53	+0.6
3,471,061	-		PFLU_RS15500	0.53	-0.3
3,471,061	-		PFLU_RS15500	0.53	+0.4
3,471,113	-		PFLU_RS15500	0.59	+0.6
3,471,141	+		PFLU_RS15500	0.62	-0.0
3,471,164	+		PFLU_RS15500	0.64	-1.0
3,471,229	-		PFLU_RS15500	0.72	+0.6
3,471,342	+		PFLU_RS15500	0.85	-1.4
3,471,342	+		PFLU_RS15500	0.85	-0.4
3,471,342	+		PFLU_RS15500	0.85	+0.0
3,471,342	+		PFLU_RS15500	0.85	-1.9
3,471,343	-		PFLU_RS15500	0.85	+0.6
3,471,343	-		PFLU_RS15500	0.85	+0.3
3,471,343	-		PFLU_RS15500	0.85	-0.9
3,471,367	+		PFLU_RS15500	0.88	+2.0
3,471,367	+		PFLU_RS15500	0.88	+1.6
3,471,367	+		PFLU_RS15500	0.88	-2.1
3,471,367	+		PFLU_RS15500	0.88	+1.8
3,471,367	+		PFLU_RS15500	0.88	-2.5
3,471,367	+		PFLU_RS15500	0.88	-1.9
3,471,367	+		PFLU_RS15500	0.88	-0.6
3,471,367	+		PFLU_RS15500	0.88	+2.9
3,471,367	+		PFLU_RS15500	0.88	-1.6
3,471,367	+		PFLU_RS15500	0.88	-1.5
3,471,367	+		PFLU_RS15500	0.88	-0.8
3,471,368	-		PFLU_RS15500	0.88	-0.2
3,471,368	-		PFLU_RS15500	0.88	-1.6
3,471,368	-		PFLU_RS15500	0.88	-1.8
3,471,368	-		PFLU_RS15500	0.88	-1.0
3,471,415	-				-0.9
3,471,473	+				-0.0
3,471,603	-		PFLU_RS15505	0.11	-0.4
3,471,694	+		PFLU_RS15505	0.29	+1.6
3,471,694	+		PFLU_RS15505	0.29	+1.6
3,471,694	+		PFLU_RS15505	0.29	-0.7
3,471,700	+		PFLU_RS15505	0.31	+1.4
3,471,700	+		PFLU_RS15505	0.31	+2.3
3,471,701	-		PFLU_RS15505	0.31	-0.8
3,471,701	-		PFLU_RS15505	0.31	-3.3
3,471,703	+		PFLU_RS15505	0.31	-0.1
3,471,704	-		PFLU_RS15505	0.31	+1.3
3,471,804	+		PFLU_RS15505	0.51	-1.8
3,471,804	+		PFLU_RS15505	0.51	+1.3
3,471,805	-		PFLU_RS15505	0.52	-0.3
3,471,841	+		PFLU_RS15505	0.59	-0.4
3,471,872	-		PFLU_RS15505	0.65	+0.4
3,471,874	-		PFLU_RS15505	0.65	+0.7
3,471,877	+		PFLU_RS15505	0.66	-0.0
3,471,877	+		PFLU_RS15505	0.66	-2.1
3,471,877	+		PFLU_RS15505	0.66	-1.6
3,471,878	-		PFLU_RS15505	0.66	+0.6
3,471,880	+		PFLU_RS15505	0.67	+0.6
3,471,881	-		PFLU_RS15505	0.67	+1.2
3,471,896	-		PFLU_RS15505	0.70	-0.7
3,471,912	-		PFLU_RS15505	0.73	+1.3
3,471,915	+		PFLU_RS15505	0.74	-0.6
3,471,919	+		PFLU_RS15505	0.74	-2.0
3,471,947	+		PFLU_RS15505	0.80	-2.7
3,472,070	-				+0.5
3,472,074	-				+0.4
3,472,081	+				+0.5
3,472,082	-				-1.9
3,472,156	+				-3.2
3,472,156	+				-1.4
3,472,157	-				+0.6
3,472,218	+				-1.3
3,472,218	+				+0.3
3,472,330	-		PFLU_RS15510	0.11	+1.6
3,472,330	-		PFLU_RS15510	0.11	+0.4
3,472,377	+		PFLU_RS15510	0.16	+1.0
3,472,479	+		PFLU_RS15510	0.26	+1.6
3,472,479	+		PFLU_RS15510	0.26	+0.6
3,472,479	+		PFLU_RS15510	0.26	+0.1
3,472,479	+		PFLU_RS15510	0.26	+1.3
3,472,479	+		PFLU_RS15510	0.26	+0.3
3,472,480	-		PFLU_RS15510	0.26	+0.1
3,472,480	-		PFLU_RS15510	0.26	+0.9
3,472,512	+		PFLU_RS15510	0.29	-3.4
3,472,512	+		PFLU_RS15510	0.29	-2.3
3,472,512	+		PFLU_RS15510	0.29	+1.0
3,472,512	+		PFLU_RS15510	0.29	-2.8
3,472,512	+		PFLU_RS15510	0.29	-2.3
3,472,513	-		PFLU_RS15510	0.29	-0.3
3,472,513	-		PFLU_RS15510	0.29	+0.6
3,472,513	-		PFLU_RS15510	0.29	+1.6
3,472,513	-		PFLU_RS15510	0.29	-2.0
3,472,513	-		PFLU_RS15510	0.29	-0.3
3,472,513	-		PFLU_RS15510	0.29	+1.0
3,472,513	-		PFLU_RS15510	0.29	+0.6
3,472,513	-		PFLU_RS15510	0.29	+0.7
3,472,513	-		PFLU_RS15510	0.29	+0.1
3,472,513	-		PFLU_RS15510	0.29	-0.6
3,472,554	+		PFLU_RS15510	0.33	-0.1
3,472,555	-		PFLU_RS15510	0.33	-0.2
3,472,575	+		PFLU_RS15510	0.35	-1.2
3,472,576	-		PFLU_RS15510	0.35	+2.3
3,472,576	-		PFLU_RS15510	0.35	+1.0
3,472,670	+		PFLU_RS15510	0.44	+0.6
3,472,671	-		PFLU_RS15510	0.45	-1.6
3,472,671	-		PFLU_RS15510	0.45	+1.1
3,472,696	+		PFLU_RS15510	0.47	-0.8
3,472,696	+		PFLU_RS15510	0.47	+2.3
3,472,697	-		PFLU_RS15510	0.47	+2.5
3,472,697	-		PFLU_RS15510	0.47	+2.1
3,472,727	+		PFLU_RS15510	0.50	+0.7
3,472,727	+		PFLU_RS15510	0.50	+1.3
3,472,728	-		PFLU_RS15510	0.50	-1.3
3,472,728	-		PFLU_RS15510	0.50	-0.7
3,472,728	-		PFLU_RS15510	0.50	+0.5
3,472,798	-		PFLU_RS15510	0.57	-1.4
3,472,821	+		PFLU_RS15510	0.59	+1.6
3,472,821	+		PFLU_RS15510	0.59	+1.1
3,472,822	-		PFLU_RS15510	0.59	-0.3
3,472,822	-		PFLU_RS15510	0.59	-0.4
3,472,822	-		PFLU_RS15510	0.59	-0.8
3,472,822	-		PFLU_RS15510	0.59	+1.8
3,472,853	+		PFLU_RS15510	0.62	+0.6
3,472,854	-		PFLU_RS15510	0.62	-1.4
3,472,854	-		PFLU_RS15510	0.62	-0.4
3,472,923	+		PFLU_RS15510	0.69	+1.3
3,472,923	+		PFLU_RS15510	0.69	+3.9
3,472,923	+		PFLU_RS15510	0.69	-1.0
3,472,923	+		PFLU_RS15510	0.69	+0.8
3,472,923	+		PFLU_RS15510	0.69	+0.5
3,472,923	+		PFLU_RS15510	0.69	-0.6
3,472,923	+		PFLU_RS15510	0.69	-1.6
3,472,924	-		PFLU_RS15510	0.69	+1.0
3,472,924	-		PFLU_RS15510	0.69	-1.0
3,472,924	-		PFLU_RS15510	0.69	-0.4