Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS15300

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
3,426,546	+		PFLU_RS15295	0.32	-1.5
3,426,546	+		PFLU_RS15295	0.32	+0.6
3,426,547	-		PFLU_RS15295	0.32	+1.9
3,426,547	-		PFLU_RS15295	0.32	-1.8
3,426,547	-		PFLU_RS15295	0.32	+1.5
3,426,676	+		PFLU_RS15295	0.46	-0.0
3,426,677	-		PFLU_RS15295	0.46	-0.8
3,426,677	-		PFLU_RS15295	0.46	-0.7
3,426,677	-		PFLU_RS15295	0.46	-1.6
3,426,677	-		PFLU_RS15295	0.46	-2.5
3,426,729	+		PFLU_RS15295	0.52	+0.2
3,426,738	+		PFLU_RS15295	0.53	-0.9
3,426,738	+		PFLU_RS15295	0.53	-0.6
3,426,738	+		PFLU_RS15295	0.53	-3.2
3,426,738	+		PFLU_RS15295	0.53	+1.5
3,426,738	+		PFLU_RS15295	0.53	-2.9
3,426,738	+		PFLU_RS15295	0.53	-1.5
3,426,738	+		PFLU_RS15295	0.53	-1.5
3,426,738	+		PFLU_RS15295	0.53	+0.3
3,426,738	+		PFLU_RS15295	0.53	-0.2
3,426,738	+		PFLU_RS15295	0.53	-0.5
3,426,739	-		PFLU_RS15295	0.53	+1.7
3,426,739	-		PFLU_RS15295	0.53	-0.9
3,426,739	-		PFLU_RS15295	0.53	-0.0
3,426,739	-		PFLU_RS15295	0.53	+1.1
3,426,739	-		PFLU_RS15295	0.53	-3.5
3,426,739	-		PFLU_RS15295	0.53	-0.3
3,426,739	-		PFLU_RS15295	0.53	+0.2
3,426,739	-		PFLU_RS15295	0.53	+0.5
3,426,739	-		PFLU_RS15295	0.53	+0.7
3,426,739	-		PFLU_RS15295	0.53	+0.7
3,426,739	-		PFLU_RS15295	0.53	+0.1
3,426,739	-		PFLU_RS15295	0.53	+0.2
3,426,739	-		PFLU_RS15295	0.53	+1.5
3,426,739	-		PFLU_RS15295	0.53	+0.3
3,426,739	-		PFLU_RS15295	0.53	-0.2
3,426,739	-		PFLU_RS15295	0.53	-0.0
3,426,756	+		PFLU_RS15295	0.55	-0.0
3,426,966	+		PFLU_RS15295	0.77	-2.4
3,426,967	-		PFLU_RS15295	0.77	+0.1
3,427,145	+				+0.6
3,427,146	-				-2.1
3,427,411	+				+0.8
3,427,411	+				+0.3
3,427,411	+				+0.9
3,427,411	+				+0.3
3,427,411	+				-2.5
3,427,411	+				-0.3
3,427,411	+				+1.1
3,427,411	+				-0.6
3,427,411	+				+0.8
3,427,412	-				-1.6
3,427,412	-				+0.8
3,427,412	-				-3.0
3,427,412	-				+0.1
3,427,412	-				-0.9
3,427,412	-				-1.3
3,427,417	+				+0.6
3,427,417	+				+1.2
3,427,418	-				+0.9
3,427,418	-				-2.6
3,427,418	-				+0.2
3,427,424	-				+1.5
3,427,708	+		PFLU_RS15300	0.20	-0.3
3,427,735	+		PFLU_RS15300	0.21	-0.0
3,427,735	+		PFLU_RS15300	0.21	-0.0
3,427,735	+		PFLU_RS15300	0.21	+1.5
3,427,735	+		PFLU_RS15300	0.21	+0.6
3,427,736	-		PFLU_RS15300	0.21	+1.0
3,427,736	-		PFLU_RS15300	0.21	+1.7
3,427,736	-		PFLU_RS15300	0.21	+0.5
3,427,736	-		PFLU_RS15300	0.21	+0.3
3,427,736	-		PFLU_RS15300	0.21	+0.0
3,427,736	-		PFLU_RS15300	0.21	-1.8
3,427,756	+		PFLU_RS15300	0.22	+1.1
3,427,756	+		PFLU_RS15300	0.22	-2.0
3,427,781	+		PFLU_RS15300	0.23	-0.2
3,427,782	-		PFLU_RS15300	0.23	+0.5
3,427,782	-		PFLU_RS15300	0.23	+2.2
3,427,782	-		PFLU_RS15300	0.23	+0.5
3,427,919	-		PFLU_RS15300	0.29	+1.4
3,427,921	+		PFLU_RS15300	0.29	+1.3
3,427,921	+		PFLU_RS15300	0.29	+0.4
3,427,921	+		PFLU_RS15300	0.29	+3.5
3,427,922	-		PFLU_RS15300	0.29	-1.4
3,427,922	-		PFLU_RS15300	0.29	+1.8
3,428,125	+		PFLU_RS15300	0.38	+1.6
3,428,125	+		PFLU_RS15300	0.38	+2.8
3,428,125	+		PFLU_RS15300	0.38	-2.3
3,428,126	-		PFLU_RS15300	0.38	+0.5
3,428,174	-		PFLU_RS15300	0.40	+2.3
3,428,236	+		PFLU_RS15300	0.43	-0.8
3,428,236	+		PFLU_RS15300	0.43	-0.1
3,428,350	+		PFLU_RS15300	0.48	+1.7
3,428,351	-		PFLU_RS15300	0.48	-2.0
3,428,371	+		PFLU_RS15300	0.49	+0.8
3,428,371	+		PFLU_RS15300	0.49	+0.0
3,428,372	-		PFLU_RS15300	0.49	-0.8
3,428,479	+		PFLU_RS15300	0.54	+1.4
3,428,479	+		PFLU_RS15300	0.54	+0.7
3,428,479	+		PFLU_RS15300	0.54	-1.0
3,428,480	-		PFLU_RS15300	0.54	+0.3
3,428,480	-		PFLU_RS15300	0.54	-1.8
3,428,482	+		PFLU_RS15300	0.54	-0.8
3,428,482	+		PFLU_RS15300	0.54	+0.3
3,428,482	+		PFLU_RS15300	0.54	+0.2
3,428,482	+		PFLU_RS15300	0.54	-0.5
3,428,482	+		PFLU_RS15300	0.54	-1.3
3,428,482	+		PFLU_RS15300	0.54	-0.4
3,428,483	-		PFLU_RS15300	0.54	+0.3
3,428,483	-		PFLU_RS15300	0.54	-2.5
3,428,483	-		PFLU_RS15300	0.54	-2.2
3,428,488	+		PFLU_RS15300	0.54	-0.5
3,428,488	+		PFLU_RS15300	0.54	+1.0
3,428,489	-		PFLU_RS15300	0.54	-3.0
3,428,489	-		PFLU_RS15300	0.54	-1.4
3,428,536	+		PFLU_RS15300	0.56	-2.6
3,428,540	-		PFLU_RS15300	0.57	+0.2
3,428,540	-		PFLU_RS15300	0.57	+0.6
3,428,639	-		PFLU_RS15300	0.61	+0.2
3,428,935	+		PFLU_RS15300	0.74	-0.2
3,428,935	+		PFLU_RS15300	0.74	-0.4
3,428,936	-		PFLU_RS15300	0.74	+0.9
3,428,936	-		PFLU_RS15300	0.74	-2.2
3,428,936	-		PFLU_RS15300	0.74	+1.2
3,429,148	+		PFLU_RS15300	0.84	-0.8
3,429,149	-		PFLU_RS15300	0.84	+1.7
3,429,149	-		PFLU_RS15300	0.84	-1.5
3,429,205	+		PFLU_RS15300	0.86	+0.6
3,429,206	-		PFLU_RS15300	0.86	-0.8
3,429,206	-		PFLU_RS15300	0.86	+0.6
3,429,206	-		PFLU_RS15300	0.86	+1.7
3,429,272	-		PFLU_RS15300	0.89	+0.2
3,429,310	+				-2.7
3,429,347	-				-1.2
3,429,511	+				-1.6
3,429,511	+				+1.0
3,429,511	+				+0.2
3,429,540	+				+0.4
3,429,540	+				-1.8
3,429,540	+				+0.2
3,429,540	+				-3.7
3,429,540	+				-2.9
3,429,540	+				+0.3
3,429,541	-				-1.3
3,429,541	-				-1.6
3,429,541	-				-0.8
3,429,642	+				+0.5
3,429,642	+				-0.8
3,429,834	+		PFLU_RS15305	0.19	-0.7
3,429,835	-		PFLU_RS15305	0.19	-1.4
3,429,858	+		PFLU_RS15305	0.21	+1.2
3,430,044	+		PFLU_RS15305	0.32	+1.2
3,430,044	+		PFLU_RS15305	0.32	+1.1
3,430,044	+		PFLU_RS15305	0.32	+1.2
3,430,045	-		PFLU_RS15305	0.32	-0.9
3,430,045	-		PFLU_RS15305	0.32	-1.0
3,430,045	-		PFLU_RS15305	0.32	-0.5
3,430,089	+		PFLU_RS15305	0.35	+0.4
3,430,089	+		PFLU_RS15305	0.35	+1.5
3,430,089	+		PFLU_RS15305	0.35	-1.9
3,430,090	-		PFLU_RS15305	0.35	+1.1
3,430,284	+		PFLU_RS15305	0.47	+1.1
3,430,284	+		PFLU_RS15305	0.47	-0.2
3,430,285	-		PFLU_RS15305	0.47	+0.5
3,430,285	-		PFLU_RS15305	0.47	+0.5
3,430,285	-		PFLU_RS15305	0.47	+1.2
3,430,285	-		PFLU_RS15305	0.47	-2.5
3,430,392	+		PFLU_RS15305	0.53	-0.2
3,430,475	+		PFLU_RS15305	0.58	+0.3
3,430,476	-		PFLU_RS15305	0.58	-0.5