Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS12450

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
2,783,031	+		PFLU_RS12445	0.64	+2.1
2,783,031	+		PFLU_RS12445	0.64	-0.5
2,783,031	+		PFLU_RS12445	0.64	+0.0
2,783,031	+		PFLU_RS12445	0.64	-0.2
2,783,032	-		PFLU_RS12445	0.64	-1.6
2,783,032	-		PFLU_RS12445	0.64	+1.6
2,783,032	-		PFLU_RS12445	0.64	-0.3
2,783,032	-		PFLU_RS12445	0.64	-1.7
2,783,051	-		PFLU_RS12445	0.65	-0.0
2,783,051	-		PFLU_RS12445	0.65	+1.8
2,783,299	+		PFLU_RS12445	0.75	+4.1
2,783,300	-		PFLU_RS12445	0.75	+1.3
2,783,302	+		PFLU_RS12445	0.75	+0.7
2,783,302	+		PFLU_RS12445	0.75	-1.9
2,783,302	+		PFLU_RS12445	0.75	+0.6
2,783,302	+		PFLU_RS12445	0.75	-1.4
2,783,310	-		PFLU_RS12445	0.75	-1.8
2,783,324	-		PFLU_RS12445	0.76	-1.6
2,783,324	-		PFLU_RS12445	0.76	-2.4
2,783,483	-		PFLU_RS12445	0.82	-1.7
2,783,657	+		PFLU_RS12445	0.89	-1.2
2,783,800	+				-1.0
2,783,800	+				-0.6
2,783,800	+				+0.2
2,783,929	-				-0.5
2,783,929	-				+0.7
2,783,935	+				+0.6
2,783,936	-				+0.4
2,783,957	+				-0.3
2,783,977	-				-1.7
2,783,983	-				-1.9
2,783,996	+				+0.0
2,783,997	-				-2.4
2,784,068	+				+2.2
2,784,163	-				-0.8
2,784,163	-				+0.2
2,784,212	+		PFLU_RS12450	0.11	-1.2
2,784,213	-		PFLU_RS12450	0.11	+0.8
2,784,346	-		PFLU_RS12450	0.20	-0.2
2,784,349	+		PFLU_RS12450	0.20	+2.2
2,784,349	+		PFLU_RS12450	0.20	+1.8
2,784,350	-		PFLU_RS12450	0.20	+1.7
2,784,405	+		PFLU_RS12450	0.23	-0.6
2,784,405	+		PFLU_RS12450	0.23	-1.4
2,784,406	-		PFLU_RS12450	0.23	-0.6
2,784,406	-		PFLU_RS12450	0.23	-0.9
2,784,406	-		PFLU_RS12450	0.23	+2.6
2,784,406	-		PFLU_RS12450	0.23	-0.5
2,784,408	+		PFLU_RS12450	0.23	+0.8
2,784,409	-		PFLU_RS12450	0.23	+1.8
2,784,409	-		PFLU_RS12450	0.23	-0.6
2,784,409	-		PFLU_RS12450	0.23	-0.2
2,784,566	-		PFLU_RS12450	0.33	+1.2
2,784,566	-		PFLU_RS12450	0.33	+0.6
2,784,569	+		PFLU_RS12450	0.33	-1.0
2,784,569	+		PFLU_RS12450	0.33	+1.4
2,784,569	+		PFLU_RS12450	0.33	-0.8
2,784,569	+		PFLU_RS12450	0.33	+0.8
2,784,569	+		PFLU_RS12450	0.33	-0.6
2,784,569	+		PFLU_RS12450	0.33	-0.9
2,784,569	+		PFLU_RS12450	0.33	+0.3
2,784,569	+		PFLU_RS12450	0.33	+0.5
2,784,570	-		PFLU_RS12450	0.33	-0.6
2,784,570	-		PFLU_RS12450	0.33	+0.2
2,784,570	-		PFLU_RS12450	0.33	-1.6
2,784,570	-		PFLU_RS12450	0.33	-0.6
2,784,570	-		PFLU_RS12450	0.33	+1.8
2,784,570	-		PFLU_RS12450	0.33	-0.2
2,784,570	-		PFLU_RS12450	0.33	-0.8
2,784,648	+		PFLU_RS12450	0.38	-1.6
2,784,757	+		PFLU_RS12450	0.44	+0.5
2,784,831	+		PFLU_RS12450	0.49	-2.3
2,784,831	+		PFLU_RS12450	0.49	-1.6
2,784,832	-		PFLU_RS12450	0.49	+1.4
2,784,884	-		PFLU_RS12450	0.52	+1.4
2,784,886	-		PFLU_RS12450	0.52	+1.3
2,784,957	+		PFLU_RS12450	0.57	-0.6
2,784,957	+		PFLU_RS12450	0.57	-0.5
2,784,957	+		PFLU_RS12450	0.57	+1.8
2,784,958	-		PFLU_RS12450	0.57	-1.6
2,784,958	-		PFLU_RS12450	0.57	+4.1
2,784,958	-		PFLU_RS12450	0.57	+0.5
2,784,958	-		PFLU_RS12450	0.57	-1.0
2,784,958	-		PFLU_RS12450	0.57	+1.8
2,785,051	+		PFLU_RS12450	0.62	-0.8
2,785,051	+		PFLU_RS12450	0.62	-0.5
2,785,086	+		PFLU_RS12450	0.64	+0.4
2,785,086	+		PFLU_RS12450	0.64	+1.5
2,785,086	+		PFLU_RS12450	0.64	-1.2
2,785,087	-		PFLU_RS12450	0.64	+0.1
2,785,087	-		PFLU_RS12450	0.64	-0.6
2,785,087	-		PFLU_RS12450	0.64	-1.0
2,785,087	-		PFLU_RS12450	0.64	+3.5
2,785,087	-		PFLU_RS12450	0.64	+0.8
2,785,087	-		PFLU_RS12450	0.64	+1.0
2,785,087	-		PFLU_RS12450	0.64	-1.4
2,785,087	-		PFLU_RS12450	0.64	+0.2
2,785,221	+		PFLU_RS12450	0.72	+0.8
2,785,222	-		PFLU_RS12450	0.73	+1.4
2,785,222	-		PFLU_RS12450	0.73	+0.8
2,785,431	+		PFLU_RS12450	0.85	-1.4
2,785,431	+		PFLU_RS12450	0.85	+0.5
2,785,431	+		PFLU_RS12450	0.85	-1.2
2,785,431	+		PFLU_RS12450	0.85	-1.4
2,785,431	+		PFLU_RS12450	0.85	+1.2
2,785,432	-		PFLU_RS12450	0.85	+1.3
2,785,432	-		PFLU_RS12450	0.85	-0.7
2,785,432	-		PFLU_RS12450	0.85	-0.0
2,785,432	-		PFLU_RS12450	0.85	-1.4
2,785,432	-		PFLU_RS12450	0.85	-1.7
2,785,675	+				-1.0
2,785,676	-				+1.3
2,785,679	+				-1.0
2,785,680	-				-2.2
2,785,680	-				+2.5
2,785,680	-				+1.8
2,785,680	-				+2.0
2,785,680	-				+1.3
2,785,758	+				-0.3
2,785,759	-				-0.6
2,785,791	+				+0.5
2,785,826	-				-0.6
2,785,856	+				-0.2
2,785,856	+				+0.6
2,785,897	+				-0.5
2,785,897	+				+1.6
2,785,897	+				-0.2
2,785,897	+				+1.1
2,785,897	+				-2.9
2,785,897	+				+0.5
2,785,897	+				+1.9
2,785,897	+				+2.0
2,785,897	+				-0.4
2,785,897	+				-1.9
2,785,897	+				-1.2
2,785,897	+				-0.6
2,785,897	+				+0.7
2,785,897	+				+0.8
2,785,897	+				+0.4
2,785,898	-				-0.2
2,785,898	-				-2.0
2,785,898	-				+0.4
2,785,898	-				+3.0
2,785,898	-				+1.6
2,785,898	-				+0.3
2,785,898	-				-1.0
2,785,898	-				+0.8
2,785,951	+				+1.3
2,785,951	+				+4.5
2,785,951	+				+0.1
2,785,951	+				+0.7
2,785,951	+				+2.2
2,785,952	-				+0.4
2,785,952	-				+1.0
2,786,032	+		PFLU_RS12455	0.19	+0.5
2,786,033	-		PFLU_RS12455	0.19	+2.0
2,786,053	+		PFLU_RS12455	0.21	+1.1
2,786,053	+		PFLU_RS12455	0.21	+0.8
2,786,053	+		PFLU_RS12455	0.21	+0.8
2,786,053	+		PFLU_RS12455	0.21	+2.0
2,786,053	+		PFLU_RS12455	0.21	+0.3
2,786,053	+		PFLU_RS12455	0.21	+1.4
2,786,054	-		PFLU_RS12455	0.21	-1.0
2,786,054	-		PFLU_RS12455	0.21	+0.4
2,786,054	-		PFLU_RS12455	0.21	+1.3
2,786,114	-		PFLU_RS12455	0.29	+1.7
2,786,452	+		PFLU_RS12455	0.69	+1.1
2,786,453	-		PFLU_RS12455	0.69	+0.5
2,786,518	+		PFLU_RS12455	0.77	-2.8
2,786,519	-		PFLU_RS12455	0.77	-0.3
2,786,543	-		PFLU_RS12455	0.80	-0.7