Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS06875

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
1,537,950	-				+1.9
1,538,101	+		PFLU_RS06870	0.18	-1.4
1,538,101	+		PFLU_RS06870	0.18	+0.2
1,538,101	+		PFLU_RS06870	0.18	+1.4
1,538,101	+		PFLU_RS06870	0.18	+0.0
1,538,101	+		PFLU_RS06870	0.18	-1.0
1,538,101	+		PFLU_RS06870	0.18	+0.8
1,538,101	+		PFLU_RS06870	0.18	+0.2
1,538,102	-		PFLU_RS06870	0.18	-0.7
1,538,102	-		PFLU_RS06870	0.18	-1.5
1,538,102	-		PFLU_RS06870	0.18	-3.3
1,538,102	-		PFLU_RS06870	0.18	-1.4
1,538,102	-		PFLU_RS06870	0.18	+1.5
1,538,102	-		PFLU_RS06870	0.18	+1.1
1,538,102	-		PFLU_RS06870	0.18	+0.5
1,538,203	+		PFLU_RS06870	0.31	-1.7
1,538,203	+		PFLU_RS06870	0.31	-0.9
1,538,203	+		PFLU_RS06870	0.31	+0.9
1,538,203	+		PFLU_RS06870	0.31	-2.3
1,538,204	-		PFLU_RS06870	0.31	+2.0
1,538,204	-		PFLU_RS06870	0.31	+0.8
1,538,284	+		PFLU_RS06870	0.42	+0.7
1,538,284	+		PFLU_RS06870	0.42	-0.1
1,538,284	+		PFLU_RS06870	0.42	-0.7
1,538,284	+		PFLU_RS06870	0.42	+0.5
1,538,284	+		PFLU_RS06870	0.42	-0.8
1,538,285	-		PFLU_RS06870	0.42	-1.6
1,538,285	-		PFLU_RS06870	0.42	+1.3
1,538,285	-		PFLU_RS06870	0.42	-0.6
1,538,376	-		PFLU_RS06870	0.54	+1.1
1,538,376	-		PFLU_RS06870	0.54	+0.8
1,538,443	+		PFLU_RS06870	0.63	+0.1
1,538,443	+		PFLU_RS06870	0.63	-0.7
1,538,443	+		PFLU_RS06870	0.63	-1.4
1,538,443	+		PFLU_RS06870	0.63	-1.2
1,538,443	+		PFLU_RS06870	0.63	+1.3
1,538,443	+		PFLU_RS06870	0.63	-0.9
1,538,444	-		PFLU_RS06870	0.63	+0.6
1,538,444	-		PFLU_RS06870	0.63	+0.6
1,538,444	-		PFLU_RS06870	0.63	+0.8
1,538,444	-		PFLU_RS06870	0.63	+0.3
1,538,444	-		PFLU_RS06870	0.63	-1.4
1,538,551	+		PFLU_RS06870	0.77	-2.2
1,538,551	+		PFLU_RS06870	0.77	-0.7
1,538,551	+		PFLU_RS06870	0.77	+0.4
1,538,551	+		PFLU_RS06870	0.77	+0.1
1,538,551	+		PFLU_RS06870	0.77	+2.0
1,538,551	+		PFLU_RS06870	0.77	+0.7
1,538,551	+		PFLU_RS06870	0.77	+0.7
1,538,551	+		PFLU_RS06870	0.77	-0.8
1,538,551	+		PFLU_RS06870	0.77	-2.3
1,538,552	-		PFLU_RS06870	0.77	-2.2
1,538,552	-		PFLU_RS06870	0.77	-0.2
1,538,552	-		PFLU_RS06870	0.77	+1.0
1,538,552	-		PFLU_RS06870	0.77	-2.0
1,538,552	-		PFLU_RS06870	0.77	+0.5
1,538,552	-		PFLU_RS06870	0.77	+0.1
1,538,552	-		PFLU_RS06870	0.77	+0.0
1,538,552	-		PFLU_RS06870	0.77	+0.3
1,538,552	-		PFLU_RS06870	0.77	-2.3
1,538,552	-		PFLU_RS06870	0.77	-0.1
1,538,552	-		PFLU_RS06870	0.77	+0.6
1,538,785	+				+2.3
1,538,785	+				-1.3
1,538,785	+				+2.1
1,538,785	+				-1.8
1,538,785	+				-0.3
1,538,785	+				+0.3
1,538,785	+				-0.5
1,538,786	-				+0.6
1,538,786	-				+0.9
1,538,786	-				-0.7
1,538,786	-				+2.5
1,538,786	-				-0.5
1,538,786	-				+1.1
1,538,786	-				+1.2
1,538,786	-				+0.3
1,538,786	-				-0.9
1,538,789	+				-0.1
1,538,789	+				+0.7
1,538,789	+				+0.3
1,538,789	+				-1.2
1,538,789	+				-0.5
1,538,789	+				+0.9
1,538,789	+				-1.3
1,538,790	-				-0.9
1,538,790	-				+1.0
1,538,790	-				+2.5
1,538,790	-				+1.9
1,538,790	-				+2.3
1,538,790	-				-0.7
1,538,815	+				-0.7
1,538,816	-				-2.3
1,538,816	-				+1.5
1,538,816	-				+1.6
1,538,816	-				-0.4
1,538,871	+				-0.2
1,539,040	-		PFLU_RS06875	0.12	-0.8
1,539,123	+		PFLU_RS06875	0.20	-0.1
1,539,123	+		PFLU_RS06875	0.20	+0.3
1,539,123	+		PFLU_RS06875	0.20	-1.1
1,539,123	+		PFLU_RS06875	0.20	+0.7
1,539,123	+		PFLU_RS06875	0.20	+0.8
1,539,123	+		PFLU_RS06875	0.20	-0.1
1,539,123	+		PFLU_RS06875	0.20	+0.2
1,539,123	+		PFLU_RS06875	0.20	+1.1
1,539,123	+		PFLU_RS06875	0.20	+2.1
1,539,123	+		PFLU_RS06875	0.20	+0.8
1,539,123	+		PFLU_RS06875	0.20	-1.2
1,539,123	+		PFLU_RS06875	0.20	+1.6
1,539,123	+		PFLU_RS06875	0.20	+1.1
1,539,123	+		PFLU_RS06875	0.20	+0.9
1,539,123	+		PFLU_RS06875	0.20	-0.6
1,539,123	+		PFLU_RS06875	0.20	+1.0
1,539,123	+		PFLU_RS06875	0.20	+0.6
1,539,123	+		PFLU_RS06875	0.20	+1.4
1,539,124	-		PFLU_RS06875	0.20	-1.5
1,539,124	-		PFLU_RS06875	0.20	+1.3
1,539,124	-		PFLU_RS06875	0.20	+0.2
1,539,124	-		PFLU_RS06875	0.20	+0.4
1,539,124	-		PFLU_RS06875	0.20	-1.0
1,539,124	-		PFLU_RS06875	0.20	+0.4
1,539,124	-		PFLU_RS06875	0.20	+0.5
1,539,124	-		PFLU_RS06875	0.20	+1.2
1,539,124	-		PFLU_RS06875	0.20	-0.1
1,539,124	-		PFLU_RS06875	0.20	+0.5
1,539,132	+		PFLU_RS06875	0.21	+0.3
1,539,203	-		PFLU_RS06875	0.27	+0.3
1,539,342	+		PFLU_RS06875	0.40	-2.1
1,539,342	+		PFLU_RS06875	0.40	+1.7
1,539,342	+		PFLU_RS06875	0.40	+0.9
1,539,343	-		PFLU_RS06875	0.40	+2.3
1,539,343	-		PFLU_RS06875	0.40	+1.7
1,539,348	+		PFLU_RS06875	0.41	-0.5
1,539,384	+		PFLU_RS06875	0.44	+2.3
1,539,384	+		PFLU_RS06875	0.44	-1.2
1,539,384	+		PFLU_RS06875	0.44	-0.2
1,539,384	+		PFLU_RS06875	0.44	-1.5
1,539,385	-		PFLU_RS06875	0.44	-2.6
1,539,385	-		PFLU_RS06875	0.44	+0.8
1,539,482	+		PFLU_RS06875	0.53	+0.3
1,539,482	+		PFLU_RS06875	0.53	-0.8
1,539,482	+		PFLU_RS06875	0.53	-0.5
1,539,482	+		PFLU_RS06875	0.53	-0.4
1,539,482	+		PFLU_RS06875	0.53	+1.4
1,539,482	+		PFLU_RS06875	0.53	-3.4
1,539,483	-		PFLU_RS06875	0.53	+1.5
1,539,483	-		PFLU_RS06875	0.53	-1.3
1,539,525	+		PFLU_RS06875	0.57	+0.4
1,539,525	+		PFLU_RS06875	0.57	-0.6
1,539,525	+		PFLU_RS06875	0.57	-0.3
1,539,526	-		PFLU_RS06875	0.57	+1.2
1,539,526	-		PFLU_RS06875	0.57	-1.2
1,539,526	-		PFLU_RS06875	0.57	+2.3
1,539,526	-		PFLU_RS06875	0.57	+2.1
1,539,526	-		PFLU_RS06875	0.57	+2.2
1,539,534	+		PFLU_RS06875	0.58	-1.1
1,539,535	-		PFLU_RS06875	0.58	+1.5
1,539,621	+		PFLU_RS06875	0.66	-0.0
1,539,622	-		PFLU_RS06875	0.66	+0.4
1,539,622	-		PFLU_RS06875	0.66	+1.5
1,539,622	-		PFLU_RS06875	0.66	-2.4
1,539,622	-		PFLU_RS06875	0.66	-1.9
1,539,622	-		PFLU_RS06875	0.66	-0.5
1,539,622	-		PFLU_RS06875	0.66	+0.3
1,539,627	+		PFLU_RS06875	0.67	+0.2
1,539,628	-		PFLU_RS06875	0.67	+1.5
1,539,743	+		PFLU_RS06875	0.78	-0.4
1,539,744	-		PFLU_RS06875	0.78	+0.7
1,539,744	-		PFLU_RS06875	0.78	-1.2
1,539,747	+		PFLU_RS06875	0.78	+1.4
1,539,747	+		PFLU_RS06875	0.78	+1.5
1,539,747	+		PFLU_RS06875	0.78	+1.5
1,539,747	+		PFLU_RS06875	0.78	-0.7
1,539,747	+		PFLU_RS06875	0.78	+4.2
1,539,748	-		PFLU_RS06875	0.78	-1.7
1,539,748	-		PFLU_RS06875	0.78	-0.6
1,539,748	-		PFLU_RS06875	0.78	+0.9
1,539,748	-		PFLU_RS06875	0.78	-1.6
1,539,748	-		PFLU_RS06875	0.78	+1.3
1,539,748	-		PFLU_RS06875	0.78	-0.8
1,539,795	-		PFLU_RS06875	0.82	+1.0
1,539,904	+				-0.4
1,539,904	+				-2.0
1,539,905	-				+0.7
1,539,933	+				+3.6
1,539,934	-				+1.7
1,539,934	-				-2.0
1,539,934	-				+1.9
1,539,934	-				-0.2
1,540,095	-		PFLU_RS06880	0.37	+0.6
1,540,096	+		PFLU_RS06880	0.37	+0.7
1,540,096	+		PFLU_RS06880	0.37	+0.5
1,540,097	-		PFLU_RS06880	0.38	+3.0
1,540,109	+		PFLU_RS06880	0.41	-0.3
1,540,109	+		PFLU_RS06880	0.41	-2.6
1,540,110	-		PFLU_RS06880	0.42	+1.0
1,540,110	-		PFLU_RS06880	0.42	-0.7
1,540,124	+		PFLU_RS06880	0.46	+1.0
1,540,124	+		PFLU_RS06880	0.46	+0.7
1,540,124	+		PFLU_RS06880	0.46	-0.2
1,540,125	-		PFLU_RS06880	0.46	-0.3
1,540,125	-		PFLU_RS06880	0.46	+1.6
1,540,125	-		PFLU_RS06880	0.46	+1.1
1,540,125	-		PFLU_RS06880	0.46	-2.9
1,540,125	-		PFLU_RS06880	0.46	+2.2
1,540,160	+		PFLU_RS06880	0.58	+1.3
1,540,160	+		PFLU_RS06880	0.58	+0.5
1,540,160	+		PFLU_RS06880	0.58	+0.2
1,540,160	+		PFLU_RS06880	0.58	+2.0
1,540,160	+		PFLU_RS06880	0.58	+1.1
1,540,161	-		PFLU_RS06880	0.58	+0.5
1,540,161	-		PFLU_RS06880	0.58	+0.6
1,540,172	+		PFLU_RS06880	0.62	-1.8
1,540,172	+		PFLU_RS06880	0.62	+1.6
1,540,172	+		PFLU_RS06880	0.62	+0.0
1,540,172	+		PFLU_RS06880	0.62	+0.5
1,540,172	+		PFLU_RS06880	0.62	+0.7
1,540,172	+		PFLU_RS06880	0.62	-0.3
1,540,172	+		PFLU_RS06880	0.62	-2.0
1,540,172	+		PFLU_RS06880	0.62	-0.2
1,540,172	+		PFLU_RS06880	0.62	-1.1
1,540,172	+		PFLU_RS06880	0.62	-1.6
1,540,172	+		PFLU_RS06880	0.62	-1.0
1,540,172	+		PFLU_RS06880	0.62	+2.5
1,540,173	-		PFLU_RS06880	0.62	+0.8
1,540,173	-		PFLU_RS06880	0.62	+1.3
1,540,241	-		PFLU_RS06880	0.84	-0.5
1,540,289	+				+0.7
1,540,289	+				-0.3
1,540,289	+				-0.2
1,540,289	+				+1.0
1,540,289	+				+1.8
1,540,289	+				+1.5
1,540,289	+				+0.7
1,540,289	+				+0.4
1,540,289	+				-1.2
1,540,289	+				-1.8
1,540,290	-				+2.1
1,540,290	-				+0.8
1,540,290	-				-0.7
1,540,290	-				-0.1
1,540,292	+				-0.5
1,540,292	+				+0.8
1,540,292	+				-1.0
1,540,292	+				+1.3
1,540,293	-				-0.1
1,540,293	-				-0.2
1,540,293	-				-1.6
1,540,293	-				+1.3
1,540,317	+				-1.8
1,540,318	-				+0.4
1,540,318	-				-1.0
1,540,334	-				+1.9
1,540,334	-				-0.5
1,540,334	-				-0.4
1,540,367	+				-0.7
1,540,367	+				-1.0
1,540,406	+				-0.5
1,540,426	+				-0.7
1,540,426	+				+1.7
1,540,426	+				-2.3
1,540,426	+				+2.0
1,540,426	+				+2.2
1,540,426	+				+1.8
1,540,426	+				-2.0
1,540,426	+				+1.0
1,540,427	-				+0.5
1,540,427	-				-0.3
1,540,427	-				+0.6
1,540,427	-				-0.6
1,540,427	-				-1.3
1,540,427	-				-2.6
1,540,427	-				-0.1
1,540,613	+		PFLU_RS06885	0.10	+1.1
1,540,616	+		PFLU_RS06885	0.10	-1.2
1,540,617	-		PFLU_RS06885	0.10	+2.0
1,540,735	-		PFLU_RS06885	0.19	-0.2
1,540,767	+		PFLU_RS06885	0.21	-1.1
1,540,768	-		PFLU_RS06885	0.21	-0.2
1,540,768	-		PFLU_RS06885	0.21	-0.9
1,540,774	-		PFLU_RS06885	0.22	-1.0
1,540,845	+		PFLU_RS06885	0.27	+0.0
1,540,845	+		PFLU_RS06885	0.27	-0.1
1,540,845	+		PFLU_RS06885	0.27	+0.1
1,540,956	+		PFLU_RS06885	0.35	-0.9
1,540,957	-		PFLU_RS06885	0.35	-0.2