Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS05090

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
1,135,319	+		PFLU_RS05085	0.25	-0.7
1,135,319	+		PFLU_RS05085	0.25	-0.1
1,135,319	+		PFLU_RS05085	0.25	-1.3
1,135,319	+		PFLU_RS05085	0.25	+1.3
1,135,320	-		PFLU_RS05085	0.25	-2.6
1,135,320	-		PFLU_RS05085	0.25	-0.0
1,135,320	-		PFLU_RS05085	0.25	-0.6
1,135,320	-		PFLU_RS05085	0.25	-1.0
1,135,320	-		PFLU_RS05085	0.25	-1.8
1,135,320	-		PFLU_RS05085	0.25	-2.2
1,135,332	+		PFLU_RS05085	0.26	-1.5
1,135,333	-		PFLU_RS05085	0.26	-1.4
1,135,369	+		PFLU_RS05085	0.29	+0.4
1,135,369	+		PFLU_RS05085	0.29	-0.6
1,135,369	+		PFLU_RS05085	0.29	-0.1
1,135,369	+		PFLU_RS05085	0.29	-1.4
1,135,369	+		PFLU_RS05085	0.29	-1.8
1,135,369	+		PFLU_RS05085	0.29	-0.5
1,135,369	+		PFLU_RS05085	0.29	+1.6
1,135,369	+		PFLU_RS05085	0.29	-0.5
1,135,369	+		PFLU_RS05085	0.29	-0.7
1,135,369	+		PFLU_RS05085	0.29	-1.2
1,135,369	+		PFLU_RS05085	0.29	-2.0
1,135,370	-		PFLU_RS05085	0.29	+0.8
1,135,370	-		PFLU_RS05085	0.29	+1.5
1,135,370	-		PFLU_RS05085	0.29	+0.2
1,135,370	-		PFLU_RS05085	0.29	-2.4
1,135,370	-		PFLU_RS05085	0.29	+0.3
1,135,375	+		PFLU_RS05085	0.30	+0.6
1,135,375	+		PFLU_RS05085	0.30	+1.0
1,135,564	+		PFLU_RS05085	0.44	+0.6
1,135,670	-		PFLU_RS05085	0.53	+2.2
1,135,700	+		PFLU_RS05085	0.55	-1.1
1,135,701	-		PFLU_RS05085	0.55	-0.1
1,135,787	-		PFLU_RS05085	0.62	-0.2
1,135,787	-		PFLU_RS05085	0.62	+0.8
1,135,787	-		PFLU_RS05085	0.62	+1.4
1,135,792	+		PFLU_RS05085	0.62	-0.3
1,135,792	+		PFLU_RS05085	0.62	+1.2
1,135,792	+		PFLU_RS05085	0.62	+0.5
1,135,792	+		PFLU_RS05085	0.62	-2.3
1,135,792	+		PFLU_RS05085	0.62	-2.3
1,135,793	-		PFLU_RS05085	0.62	-1.8
1,135,818	-		PFLU_RS05085	0.64	+0.7
1,135,818	-		PFLU_RS05085	0.64	+0.9
1,135,862	+		PFLU_RS05085	0.68	+0.9
1,135,863	-		PFLU_RS05085	0.68	-0.0
1,135,987	+		PFLU_RS05085	0.77	+1.1
1,135,987	+		PFLU_RS05085	0.77	+0.2
1,135,987	+		PFLU_RS05085	0.77	+1.6
1,135,987	+		PFLU_RS05085	0.77	-2.2
1,135,987	+		PFLU_RS05085	0.77	-0.3
1,135,987	+		PFLU_RS05085	0.77	+1.1
1,135,987	+		PFLU_RS05085	0.77	+0.3
1,135,987	+		PFLU_RS05085	0.77	+0.3
1,135,987	+		PFLU_RS05085	0.77	-1.4
1,135,988	-		PFLU_RS05085	0.77	-0.3
1,135,988	-		PFLU_RS05085	0.77	+0.5
1,135,988	-		PFLU_RS05085	0.77	-1.1
1,135,988	-		PFLU_RS05085	0.77	+0.1
1,135,988	-		PFLU_RS05085	0.77	-2.5
1,135,988	-		PFLU_RS05085	0.77	+1.6
1,135,988	-		PFLU_RS05085	0.77	-1.6
1,135,988	-		PFLU_RS05085	0.77	-0.4
1,136,011	+		PFLU_RS05085	0.79	-2.6
1,136,011	+		PFLU_RS05085	0.79	-1.5
1,136,012	-		PFLU_RS05085	0.79	-0.2
1,136,154	+				-1.6
1,136,154	+				+1.3
1,136,154	+				-1.0
1,136,154	+				+0.2
1,136,154	+				-1.4
1,136,155	-				-3.2
1,136,155	-				+0.7
1,136,155	-				+0.8
1,136,155	-				+0.6
1,136,155	-				-1.9
1,136,155	-				-0.3
1,136,155	-				-1.6
1,136,155	-				+3.3
1,136,224	+				-0.3
1,136,224	+				-1.9
1,136,224	+				-0.5
1,136,224	+				-0.7
1,136,224	+				+0.5
1,136,224	+				-0.2
1,136,225	-				-1.1
1,136,225	-				+2.5
1,136,225	-				+0.6
1,136,225	-				-0.2
1,136,225	-				+1.0
1,136,225	-				-2.3
1,136,225	-				-1.4
1,136,637	+		PFLU_RS05090	0.28	+1.2
1,136,638	-		PFLU_RS05090	0.28	+0.7
1,136,657	+		PFLU_RS05090	0.29	+1.0
1,136,657	+		PFLU_RS05090	0.29	-1.6
1,136,657	+		PFLU_RS05090	0.29	-2.2
1,136,657	+		PFLU_RS05090	0.29	-1.5
1,136,657	+		PFLU_RS05090	0.29	+0.0
1,136,657	+		PFLU_RS05090	0.29	+0.5
1,136,657	+		PFLU_RS05090	0.29	+0.4
1,136,657	+		PFLU_RS05090	0.29	+2.3
1,136,657	+		PFLU_RS05090	0.29	-0.8
1,136,658	-		PFLU_RS05090	0.29	-0.6
1,136,658	-		PFLU_RS05090	0.29	-0.3
1,136,658	-		PFLU_RS05090	0.29	+0.0
1,136,658	-		PFLU_RS05090	0.29	+0.9
1,136,669	+		PFLU_RS05090	0.30	-0.5
1,136,669	+		PFLU_RS05090	0.30	-1.8
1,136,669	+		PFLU_RS05090	0.30	-0.7
1,136,670	-		PFLU_RS05090	0.30	+0.4
1,136,670	-		PFLU_RS05090	0.30	+0.5
1,136,738	+		PFLU_RS05090	0.35	+0.6
1,136,738	+		PFLU_RS05090	0.35	-0.0
1,136,738	+		PFLU_RS05090	0.35	-0.0
1,136,738	+		PFLU_RS05090	0.35	-0.3
1,136,738	+		PFLU_RS05090	0.35	-1.8
1,136,738	+		PFLU_RS05090	0.35	+1.2
1,136,738	+		PFLU_RS05090	0.35	-0.1
1,136,738	+		PFLU_RS05090	0.35	+1.5
1,136,738	+		PFLU_RS05090	0.35	-0.3
1,136,738	+		PFLU_RS05090	0.35	-1.1
1,136,738	+		PFLU_RS05090	0.35	-1.6
1,136,739	-		PFLU_RS05090	0.36	+0.3
1,136,739	-		PFLU_RS05090	0.36	-0.4
1,136,739	-		PFLU_RS05090	0.36	-3.2
1,136,739	-		PFLU_RS05090	0.36	-1.1
1,136,739	-		PFLU_RS05090	0.36	-3.0
1,136,744	+		PFLU_RS05090	0.36	-1.5
1,136,744	+		PFLU_RS05090	0.36	-0.6
1,136,744	+		PFLU_RS05090	0.36	-2.1
1,136,744	+		PFLU_RS05090	0.36	-1.8
1,136,744	+		PFLU_RS05090	0.36	-2.9
1,136,744	+		PFLU_RS05090	0.36	-3.0
1,136,744	+		PFLU_RS05090	0.36	-0.0
1,136,744	+		PFLU_RS05090	0.36	-1.3
1,136,744	+		PFLU_RS05090	0.36	-0.1
1,136,745	-		PFLU_RS05090	0.36	-1.7
1,136,745	-		PFLU_RS05090	0.36	-3.5
1,136,745	-		PFLU_RS05090	0.36	-1.1
1,136,745	-		PFLU_RS05090	0.36	-1.4
1,136,745	-		PFLU_RS05090	0.36	-0.8
1,136,745	-		PFLU_RS05090	0.36	-1.3
1,136,745	-		PFLU_RS05090	0.36	-1.8
1,136,745	-		PFLU_RS05090	0.36	-0.5
1,136,745	-		PFLU_RS05090	0.36	+0.2
1,136,759	+		PFLU_RS05090	0.37	-1.6
1,136,956	+		PFLU_RS05090	0.52	-0.0
1,136,956	+		PFLU_RS05090	0.52	-1.0
1,136,956	+		PFLU_RS05090	0.52	-0.3
1,136,956	+		PFLU_RS05090	0.52	-0.3
1,137,014	+		PFLU_RS05090	0.57	-0.5
1,137,049	+		PFLU_RS05090	0.60	-1.0
1,137,049	+		PFLU_RS05090	0.60	-0.6
1,137,149	+		PFLU_RS05090	0.67	-0.4
1,137,149	+		PFLU_RS05090	0.67	+0.7
1,137,277	+		PFLU_RS05090	0.77	+0.3
1,137,277	+		PFLU_RS05090	0.77	+0.9
1,137,277	+		PFLU_RS05090	0.77	+0.9
1,137,277	+		PFLU_RS05090	0.77	+1.1
1,137,277	+		PFLU_RS05090	0.77	-2.6
1,137,277	+		PFLU_RS05090	0.77	-0.3
1,137,277	+		PFLU_RS05090	0.77	-2.2
1,137,277	+		PFLU_RS05090	0.77	-1.7
1,137,277	+		PFLU_RS05090	0.77	-1.7
1,137,277	+		PFLU_RS05090	0.77	+0.8
1,137,277	+		PFLU_RS05090	0.77	+0.0
1,137,277	+		PFLU_RS05090	0.77	-2.6
1,137,277	+		PFLU_RS05090	0.77	-1.4
1,137,277	+		PFLU_RS05090	0.77	-2.7
1,137,277	+		PFLU_RS05090	0.77	+0.4
1,137,277	+		PFLU_RS05090	0.77	-0.4
1,137,277	+		PFLU_RS05090	0.77	-0.6
1,137,277	+		PFLU_RS05090	0.77	+0.3
1,137,277	+		PFLU_RS05090	0.77	+1.5
1,137,277	+		PFLU_RS05090	0.77	-1.1
1,137,277	+		PFLU_RS05090	0.77	-0.5
1,137,277	+		PFLU_RS05090	0.77	-1.3
1,137,277	+		PFLU_RS05090	0.77	-0.2
1,137,277	+		PFLU_RS05090	0.77	-1.3
1,137,277	+		PFLU_RS05090	0.77	+1.6
1,137,277	+		PFLU_RS05090	0.77	-0.1
1,137,277	+		PFLU_RS05090	0.77	-0.9
1,137,277	+		PFLU_RS05090	0.77	+0.2
1,137,278	-		PFLU_RS05090	0.77	+1.1
1,137,278	-		PFLU_RS05090	0.77	-0.8
1,137,278	-		PFLU_RS05090	0.77	-1.1
1,137,278	-		PFLU_RS05090	0.77	+0.3
1,137,278	-		PFLU_RS05090	0.77	-1.3
1,137,278	-		PFLU_RS05090	0.77	-1.8
1,137,278	-		PFLU_RS05090	0.77	-0.3
1,137,278	-		PFLU_RS05090	0.77	-0.2
1,137,278	-		PFLU_RS05090	0.77	-1.1
1,137,278	-		PFLU_RS05090	0.77	-1.6
1,137,278	-		PFLU_RS05090	0.77	+1.6
1,137,278	-		PFLU_RS05090	0.77	+2.1
1,137,278	-		PFLU_RS05090	0.77	-2.0
1,137,278	-		PFLU_RS05090	0.77	-2.3
1,137,278	-		PFLU_RS05090	0.77	-1.0
1,137,278	-		PFLU_RS05090	0.77	+1.5
1,137,278	-		PFLU_RS05090	0.77	+0.3
1,137,278	-		PFLU_RS05090	0.77	-1.2
1,137,278	-		PFLU_RS05090	0.77	-1.6
1,137,278	-		PFLU_RS05090	0.77	-0.8
1,137,278	-		PFLU_RS05090	0.77	+0.2
1,137,278	-		PFLU_RS05090	0.77	+1.0
1,137,278	-		PFLU_RS05090	0.77	-0.4
1,137,278	-		PFLU_RS05090	0.77	-2.1
1,137,278	-		PFLU_RS05090	0.77	-0.4
1,137,278	-		PFLU_RS05090	0.77	+5.1
1,137,278	-		PFLU_RS05090	0.77	-1.7
1,137,278	-		PFLU_RS05090	0.77	-2.0
1,137,278	-		PFLU_RS05090	0.77	+0.2
1,137,278	-		PFLU_RS05090	0.77	-1.4
1,137,278	-		PFLU_RS05090	0.77	-0.6
1,137,278	-		PFLU_RS05090	0.77	+0.0
1,137,278	-		PFLU_RS05090	0.77	-1.4
1,137,281	+		PFLU_RS05090	0.78	-0.8
1,137,281	+		PFLU_RS05090	0.78	-1.7
1,137,281	+		PFLU_RS05090	0.78	-1.4
1,137,281	+		PFLU_RS05090	0.78	+0.7
1,137,281	+		PFLU_RS05090	0.78	-1.9
1,137,281	+		PFLU_RS05090	0.78	+2.0
1,137,282	-		PFLU_RS05090	0.78	-2.3
1,137,282	-		PFLU_RS05090	0.78	-0.5
1,137,282	-		PFLU_RS05090	0.78	-0.8
1,137,282	-		PFLU_RS05090	0.78	-0.2
1,137,282	-		PFLU_RS05090	0.78	-1.7
1,137,282	-		PFLU_RS05090	0.78	+0.5
1,137,282	-		PFLU_RS05090	0.78	-1.7
1,137,282	-		PFLU_RS05090	0.78	-1.9
1,137,282	-		PFLU_RS05090	0.78	-0.9
1,137,282	-		PFLU_RS05090	0.78	-0.3
1,137,282	-		PFLU_RS05090	0.78	-0.4
1,137,282	-		PFLU_RS05090	0.78	-0.8
1,137,282	-		PFLU_RS05090	0.78	+1.7
1,137,282	-		PFLU_RS05090	0.78	+2.2
1,137,282	-		PFLU_RS05090	0.78	+0.5
1,137,282	-		PFLU_RS05090	0.78	-0.5
1,137,282	-		PFLU_RS05090	0.78	-2.7
1,137,282	-		PFLU_RS05090	0.78	+0.4
1,137,590	+				-0.7
1,137,590	+				+2.1
1,137,590	+				-1.0
1,137,590	+				-1.7
1,137,590	+				-1.3
1,137,590	+				+2.3
1,137,590	+				-1.2
1,137,590	+				-1.3
1,137,590	+				+0.6
1,137,590	+				+0.8
1,137,590	+				+2.4
1,137,590	+				+1.7
1,137,590	+				+0.5
1,137,590	+				-0.9
1,137,591	-				+1.8
1,137,591	-				-0.9
1,137,591	-				+0.7
1,137,591	-				+0.5
1,137,591	-				+1.4
1,137,591	-				-0.9
1,137,591	-				-0.2
1,137,591	-				+0.3
1,137,591	-				+0.1
1,137,591	-				-0.5
1,137,592	+				-1.9
1,137,592	+				-0.3
1,137,592	+				+0.5
1,137,592	+				-1.6
1,137,592	+				-1.9
1,137,592	+				-1.1
1,137,592	+				+0.5
1,137,592	+				-0.3
1,137,592	+				+0.7
1,137,592	+				+0.2
1,137,593	-				+0.7
1,137,593	-				+1.1
1,137,593	-				-0.4
1,137,593	-				-1.2
1,137,593	-				+0.5
1,137,593	-				-0.1
1,137,593	-				+0.1
1,137,593	-				+1.2
1,137,593	-				-1.8
1,137,593	-				+0.8
1,137,593	-				-2.6
1,137,593	-				+1.8
1,137,593	-				+2.4
1,137,596	+				+1.6
1,137,596	+				+0.2
1,137,596	+				+0.4
1,137,596	+				-0.9
1,137,596	+				+0.0
1,137,596	+				-0.9
1,137,596	+				-1.0
1,137,596	+				-0.3
1,137,596	+				-0.8
1,137,597	-				+0.6
1,137,597	-				+0.1
1,137,597	-				+1.4
1,137,597	-				+0.5
1,137,597	-				+0.2
1,137,597	-				+1.0
1,137,597	-				-0.4
1,137,597	-				+1.0
1,137,597	-				+0.3
1,137,597	-				-1.6
1,137,597	-				-1.2
1,137,600	-				+0.6
1,137,600	-				+0.6
1,137,618	-				-1.8
1,137,716	+		PFLU_RS05095	0.21	-0.5
1,137,717	-		PFLU_RS05095	0.21	+0.5
1,137,803	+		PFLU_RS05095	0.35	+0.1
1,137,803	+		PFLU_RS05095	0.35	+0.3
1,138,091	+		PFLU_RS05095	0.80	-1.6
1,138,091	+		PFLU_RS05095	0.80	-1.6
1,138,091	+		PFLU_RS05095	0.80	+0.5
1,138,091	+		PFLU_RS05095	0.80	+2.3
1,138,091	+		PFLU_RS05095	0.80	-1.1
1,138,091	+		PFLU_RS05095	0.80	-1.1
1,138,091	+		PFLU_RS05095	0.80	+0.6
1,138,091	+		PFLU_RS05095	0.80	+0.3
1,138,092	-		PFLU_RS05095	0.80	+0.8
1,138,092	-		PFLU_RS05095	0.80	-0.0
1,138,092	-		PFLU_RS05095	0.80	+0.1
1,138,092	-		PFLU_RS05095	0.80	+0.1
1,138,092	-		PFLU_RS05095	0.80	-0.9
1,138,214	+				-1.3
1,138,244	-				+1.3
1,138,357	+				+1.5
1,138,357	+				+0.2
1,138,426	+				+1.1
1,138,426	+				+1.3
1,138,426	+				-1.7
1,138,427	-				+1.4
1,138,428	+				+0.4
1,138,429	-				+0.4
1,138,429	-				+0.3
1,138,429	-				-3.6
1,138,429	-				+0.5
1,138,429	-				-0.5
1,138,437	+				+1.7
1,138,438	-				+1.3
1,138,438	-				+0.0
1,138,438	-				-1.3
1,138,438	-				+0.1
1,138,438	-				+0.7
1,138,441	+				+0.7
1,138,441	+				+0.9
1,138,441	+				+0.7
1,138,441	+				+2.9
1,138,441	+				-2.6
1,138,441	+				-1.5
1,138,441	+				+1.9
1,138,441	+				-1.4
1,138,441	+				-1.5
1,138,441	+				+0.8
1,138,441	+				-0.1
1,138,441	+				-0.3
1,138,441	+				+1.3
1,138,441	+				+0.1
1,138,442	-				+0.9
1,138,442	-				-0.6
1,138,442	-				-1.7
1,138,442	-				+2.2
1,138,442	-				+0.5
1,138,442	-				-1.2
1,138,442	-				+0.8
1,138,442	-				-1.5
1,138,558	+				-0.6
1,138,558	+				+0.8
1,138,559	-				-2.5