Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS03555

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS03545 and PFLU_RS03550 overlap by 4 nucleotidesPFLU_RS03550 and PFLU_RS03555 are separated by 7 nucleotidesPFLU_RS03555 and PFLU_RS03560 are separated by 10 nucleotidesPFLU_RS03560 and PFLU_RS03565 overlap by 4 nucleotides PFLU_RS03545: PFLU_RS03545 - type III secretion protein, at 819,381 to 820,394 _RS03545 PFLU_RS03550: PFLU_RS03550 - EscR/YscR/HrcR family type III secretion system export apparatus protein, at 820,391 to 821,044 _RS03550 PFLU_RS03555: PFLU_RS03555 - EscS/YscS/HrcS family type III secretion system export apparatus protein, at 821,052 to 821,315 _RS03555 PFLU_RS03560: PFLU_RS03560 - EscT/YscT/HrcT family type III secretion system export apparatus protein, at 821,326 to 822,114 _RS03560 PFLU_RS03565: PFLU_RS03565 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 822,111 to 823,208 _RS03565 Position (kb) 821 822Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 820.070 kb on + strand, within PFLU_RS03545at 820.070 kb on + strand, within PFLU_RS03545at 820.071 kb on - strand, within PFLU_RS03545at 820.071 kb on - strand, within PFLU_RS03545at 820.071 kb on - strand, within PFLU_RS03545at 820.071 kb on - strand, within PFLU_RS03545at 820.156 kb on + strand, within PFLU_RS03545at 820.157 kb on - strand, within PFLU_RS03545at 820.202 kb on - strand, within PFLU_RS03545at 820.202 kb on - strand, within PFLU_RS03545at 820.303 kb on - strandat 820.319 kb on + strandat 820.319 kb on + strandat 820.416 kb on + strandat 820.416 kb on + strandat 820.417 kb on - strandat 820.417 kb on - strandat 820.417 kb on - strandat 820.461 kb on + strand, within PFLU_RS03550at 820.461 kb on + strand, within PFLU_RS03550at 820.461 kb on + strand, within PFLU_RS03550at 820.462 kb on - strand, within PFLU_RS03550at 820.462 kb on - strand, within PFLU_RS03550at 820.584 kb on + strand, within PFLU_RS03550at 820.584 kb on + strand, within PFLU_RS03550at 820.585 kb on - strand, within PFLU_RS03550at 820.585 kb on - strand, within PFLU_RS03550at 820.588 kb on + strand, within PFLU_RS03550at 820.588 kb on + strand, within PFLU_RS03550at 820.589 kb on - strand, within PFLU_RS03550at 820.589 kb on - strand, within PFLU_RS03550at 820.589 kb on - strand, within PFLU_RS03550at 820.589 kb on - strand, within PFLU_RS03550at 820.589 kb on - strand, within PFLU_RS03550at 820.589 kb on - strand, within PFLU_RS03550at 820.589 kb on - strand, within PFLU_RS03550at 820.589 kb on - strand, within PFLU_RS03550at 820.607 kb on + strand, within PFLU_RS03550at 820.607 kb on + strand, within PFLU_RS03550at 820.608 kb on - strand, within PFLU_RS03550at 820.863 kb on + strand, within PFLU_RS03550at 820.863 kb on + strand, within PFLU_RS03550at 820.864 kb on - strand, within PFLU_RS03550at 820.877 kb on + strand, within PFLU_RS03550at 820.877 kb on + strand, within PFLU_RS03550at 820.877 kb on + strand, within PFLU_RS03550at 820.877 kb on + strand, within PFLU_RS03550at 820.877 kb on + strand, within PFLU_RS03550at 820.877 kb on + strand, within PFLU_RS03550at 820.877 kb on + strand, within PFLU_RS03550at 820.877 kb on + strand, within PFLU_RS03550at 820.877 kb on + strand, within PFLU_RS03550at 820.878 kb on - strand, within PFLU_RS03550at 820.878 kb on - strand, within PFLU_RS03550at 820.878 kb on - strand, within PFLU_RS03550at 820.878 kb on - strand, within PFLU_RS03550at 821.037 kb on - strandat 821.037 kb on - strandat 821.037 kb on - strandat 821.051 kb on + strandat 821.051 kb on + strandat 821.051 kb on + strandat 821.052 kb on - strandat 821.065 kb on + strandat 821.065 kb on + strandat 821.065 kb on + strandat 821.065 kb on + strandat 821.065 kb on + strandat 821.066 kb on - strandat 821.067 kb on - strandat 821.248 kb on + strand, within PFLU_RS03555at 821.335 kb on + strandat 821.336 kb on - strandat 821.344 kb on + strandat 821.344 kb on + strandat 821.344 kb on + strandat 821.345 kb on - strandat 821.380 kb on + strandat 821.380 kb on + strandat 821.421 kb on + strand, within PFLU_RS03560at 821.421 kb on + strand, within PFLU_RS03560at 821.421 kb on + strand, within PFLU_RS03560at 821.421 kb on + strand, within PFLU_RS03560at 821.421 kb on + strand, within PFLU_RS03560at 821.421 kb on + strand, within PFLU_RS03560at 821.422 kb on - strand, within PFLU_RS03560at 821.422 kb on - strand, within PFLU_RS03560at 821.422 kb on - strand, within PFLU_RS03560at 821.422 kb on - strand, within PFLU_RS03560at 821.422 kb on - strand, within PFLU_RS03560at 821.423 kb on + strand, within PFLU_RS03560at 821.423 kb on + strand, within PFLU_RS03560at 821.423 kb on + strand, within PFLU_RS03560at 821.423 kb on + strand, within PFLU_RS03560at 821.423 kb on + strand, within PFLU_RS03560at 821.423 kb on + strand, within PFLU_RS03560at 821.423 kb on + strand, within PFLU_RS03560at 821.423 kb on + strand, within PFLU_RS03560at 821.423 kb on + strand, within PFLU_RS03560at 821.423 kb on + strand, within PFLU_RS03560at 821.424 kb on - strand, within PFLU_RS03560at 821.424 kb on - strand, within PFLU_RS03560at 821.424 kb on - strand, within PFLU_RS03560at 821.424 kb on - strand, within PFLU_RS03560at 821.443 kb on - strand, within PFLU_RS03560at 821.481 kb on + strand, within PFLU_RS03560at 821.485 kb on + strand, within PFLU_RS03560at 821.485 kb on + strand, within PFLU_RS03560at 821.485 kb on + strand, within PFLU_RS03560at 821.485 kb on + strand, within PFLU_RS03560at 821.485 kb on + strand, within PFLU_RS03560at 821.485 kb on + strand, within PFLU_RS03560at 821.485 kb on + strand, within PFLU_RS03560at 821.485 kb on + strand, within PFLU_RS03560at 821.485 kb on + strand, within PFLU_RS03560at 821.485 kb on + strand, within PFLU_RS03560at 821.485 kb on + strand, within PFLU_RS03560at 821.485 kb on + strand, within PFLU_RS03560at 821.485 kb on + strand, within PFLU_RS03560at 821.485 kb on + strand, within PFLU_RS03560at 821.485 kb on + strand, within PFLU_RS03560at 821.486 kb on - strand, within PFLU_RS03560at 821.486 kb on - strand, within PFLU_RS03560at 821.486 kb on - strand, within PFLU_RS03560at 821.486 kb on - strand, within PFLU_RS03560at 821.486 kb on - strand, within PFLU_RS03560at 821.486 kb on - strand, within PFLU_RS03560at 821.486 kb on - strand, within PFLU_RS03560at 821.486 kb on - strand, within PFLU_RS03560at 821.510 kb on - strand, within PFLU_RS03560at 821.522 kb on + strand, within PFLU_RS03560at 821.522 kb on + strand, within PFLU_RS03560at 821.564 kb on + strand, within PFLU_RS03560at 821.564 kb on + strand, within PFLU_RS03560at 821.564 kb on + strand, within PFLU_RS03560at 821.564 kb on + strand, within PFLU_RS03560at 821.564 kb on + strand, within PFLU_RS03560at 821.565 kb on - strand, within PFLU_RS03560at 821.776 kb on + strand, within PFLU_RS03560at 821.776 kb on + strand, within PFLU_RS03560at 821.776 kb on + strand, within PFLU_RS03560at 821.776 kb on + strand, within PFLU_RS03560at 821.776 kb on + strand, within PFLU_RS03560at 821.777 kb on - strand, within PFLU_RS03560at 821.777 kb on - strand, within PFLU_RS03560at 821.777 kb on - strand, within PFLU_RS03560at 821.879 kb on - strand, within PFLU_RS03560at 821.879 kb on - strand, within PFLU_RS03560at 821.942 kb on - strand, within PFLU_RS03560at 822.016 kb on + strand, within PFLU_RS03560at 822.017 kb on - strand, within PFLU_RS03560at 822.052 kb on - strandat 822.052 kb on - strandat 822.052 kb on - strandat 822.289 kb on + strand, within PFLU_RS03565at 822.289 kb on + strand, within PFLU_RS03565at 822.289 kb on + strand, within PFLU_RS03565at 822.289 kb on + strand, within PFLU_RS03565at 822.289 kb on + strand, within PFLU_RS03565at 822.290 kb on - strand, within PFLU_RS03565

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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820,070 + PFLU_RS03545 0.68 +1.1
820,070 + PFLU_RS03545 0.68 -1.4
820,071 - PFLU_RS03545 0.68 +0.3
820,071 - PFLU_RS03545 0.68 +1.7
820,071 - PFLU_RS03545 0.68 +0.7
820,071 - PFLU_RS03545 0.68 -2.4
820,156 + PFLU_RS03545 0.76 +0.2
820,157 - PFLU_RS03545 0.77 -2.1
820,202 - PFLU_RS03545 0.81 -0.2
820,202 - PFLU_RS03545 0.81 +1.1
820,303 - -0.2
820,319 + -2.7
820,319 + +0.1
820,416 + -1.1
820,416 + +0.3
820,417 - -1.9
820,417 - -0.6
820,417 - -0.2
820,461 + PFLU_RS03550 0.11 +1.7
820,461 + PFLU_RS03550 0.11 -1.1
820,461 + PFLU_RS03550 0.11 +0.0
820,462 - PFLU_RS03550 0.11 +1.0
820,462 - PFLU_RS03550 0.11 -0.2
820,584 + PFLU_RS03550 0.30 -2.5
820,584 + PFLU_RS03550 0.30 +1.2
820,585 - PFLU_RS03550 0.30 -2.4
820,585 - PFLU_RS03550 0.30 +0.8
820,588 + PFLU_RS03550 0.30 -2.0
820,588 + PFLU_RS03550 0.30 -2.9
820,589 - PFLU_RS03550 0.30 +0.2
820,589 - PFLU_RS03550 0.30 +1.3
820,589 - PFLU_RS03550 0.30 +0.1
820,589 - PFLU_RS03550 0.30 +1.3
820,589 - PFLU_RS03550 0.30 -1.8
820,589 - PFLU_RS03550 0.30 -0.2
820,589 - PFLU_RS03550 0.30 -2.3
820,589 - PFLU_RS03550 0.30 +1.0
820,607 + PFLU_RS03550 0.33 +0.6
820,607 + PFLU_RS03550 0.33 -2.8
820,608 - PFLU_RS03550 0.33 +0.6
820,863 + PFLU_RS03550 0.72 +0.9
820,863 + PFLU_RS03550 0.72 +1.8
820,864 - PFLU_RS03550 0.72 +0.3
820,877 + PFLU_RS03550 0.74 -1.0
820,877 + PFLU_RS03550 0.74 -0.1
820,877 + PFLU_RS03550 0.74 -0.7
820,877 + PFLU_RS03550 0.74 -0.2
820,877 + PFLU_RS03550 0.74 +0.4
820,877 + PFLU_RS03550 0.74 +1.8
820,877 + PFLU_RS03550 0.74 -0.6
820,877 + PFLU_RS03550 0.74 -2.0
820,877 + PFLU_RS03550 0.74 +1.7
820,878 - PFLU_RS03550 0.74 +1.8
820,878 - PFLU_RS03550 0.74 +1.5
820,878 - PFLU_RS03550 0.74 +0.1
820,878 - PFLU_RS03550 0.74 +0.3
821,037 - +0.6
821,037 - -0.5
821,037 - -0.5
821,051 + -0.1
821,051 + -1.1
821,051 + +1.1
821,052 - +0.1
821,065 + +0.6
821,065 + +0.5
821,065 + +2.0
821,065 + -1.8
821,065 + -1.6
821,066 - -2.6
821,067 - -1.4
821,248 + PFLU_RS03555 0.74 -1.6
821,335 + -1.6
821,336 - -0.2
821,344 + -1.8
821,344 + +0.3
821,344 + +1.5
821,345 - +0.4
821,380 + +1.6
821,380 + +2.3
821,421 + PFLU_RS03560 0.12 -0.2
821,421 + PFLU_RS03560 0.12 -1.2
821,421 + PFLU_RS03560 0.12 +1.3
821,421 + PFLU_RS03560 0.12 -1.5
821,421 + PFLU_RS03560 0.12 -0.1
821,421 + PFLU_RS03560 0.12 -3.7
821,422 - PFLU_RS03560 0.12 -0.8
821,422 - PFLU_RS03560 0.12 -1.7
821,422 - PFLU_RS03560 0.12 -0.8
821,422 - PFLU_RS03560 0.12 +0.7
821,422 - PFLU_RS03560 0.12 +2.1
821,423 + PFLU_RS03560 0.12 -1.5
821,423 + PFLU_RS03560 0.12 -1.8
821,423 + PFLU_RS03560 0.12 +0.3
821,423 + PFLU_RS03560 0.12 +1.2
821,423 + PFLU_RS03560 0.12 +0.5
821,423 + PFLU_RS03560 0.12 +0.5
821,423 + PFLU_RS03560 0.12 +2.0
821,423 + PFLU_RS03560 0.12 +0.3
821,423 + PFLU_RS03560 0.12 -0.4
821,423 + PFLU_RS03560 0.12 +1.5
821,424 - PFLU_RS03560 0.12 -0.6
821,424 - PFLU_RS03560 0.12 +1.7
821,424 - PFLU_RS03560 0.12 -1.6
821,424 - PFLU_RS03560 0.12 +1.6
821,443 - PFLU_RS03560 0.15 -0.2
821,481 + PFLU_RS03560 0.20 -0.7
821,485 + PFLU_RS03560 0.20 -2.0
821,485 + PFLU_RS03560 0.20 -1.4
821,485 + PFLU_RS03560 0.20 +0.4
821,485 + PFLU_RS03560 0.20 +0.4
821,485 + PFLU_RS03560 0.20 +2.9
821,485 + PFLU_RS03560 0.20 -0.5
821,485 + PFLU_RS03560 0.20 +1.0
821,485 + PFLU_RS03560 0.20 -1.0
821,485 + PFLU_RS03560 0.20 -0.6
821,485 + PFLU_RS03560 0.20 +0.3
821,485 + PFLU_RS03560 0.20 +1.7
821,485 + PFLU_RS03560 0.20 +1.3
821,485 + PFLU_RS03560 0.20 +1.8
821,485 + PFLU_RS03560 0.20 -0.1
821,485 + PFLU_RS03560 0.20 -2.2
821,486 - PFLU_RS03560 0.20 +3.2
821,486 - PFLU_RS03560 0.20 +1.6
821,486 - PFLU_RS03560 0.20 +1.6
821,486 - PFLU_RS03560 0.20 -0.5
821,486 - PFLU_RS03560 0.20 -1.0
821,486 - PFLU_RS03560 0.20 +0.6
821,486 - PFLU_RS03560 0.20 +0.7
821,486 - PFLU_RS03560 0.20 -0.9
821,510 - PFLU_RS03560 0.23 +0.5
821,522 + PFLU_RS03560 0.25 +1.4
821,522 + PFLU_RS03560 0.25 +0.8
821,564 + PFLU_RS03560 0.30 -2.5
821,564 + PFLU_RS03560 0.30 -1.5
821,564 + PFLU_RS03560 0.30 +1.2
821,564 + PFLU_RS03560 0.30 -1.9
821,564 + PFLU_RS03560 0.30 +0.6
821,565 - PFLU_RS03560 0.30 -1.0
821,776 + PFLU_RS03560 0.57 +0.9
821,776 + PFLU_RS03560 0.57 -2.8
821,776 + PFLU_RS03560 0.57 +0.5
821,776 + PFLU_RS03560 0.57 -1.6
821,776 + PFLU_RS03560 0.57 -2.4
821,777 - PFLU_RS03560 0.57 +0.8
821,777 - PFLU_RS03560 0.57 +0.7
821,777 - PFLU_RS03560 0.57 +0.8
821,879 - PFLU_RS03560 0.70 +1.1
821,879 - PFLU_RS03560 0.70 -1.9
821,942 - PFLU_RS03560 0.78 -1.6
822,016 + PFLU_RS03560 0.87 +0.0
822,017 - PFLU_RS03560 0.88 +0.6
822,052 - -1.1
822,052 - +2.3
822,052 - -0.5
822,289 + PFLU_RS03565 0.16 +0.5
822,289 + PFLU_RS03565 0.16 -0.8
822,289 + PFLU_RS03565 0.16 -0.2
822,289 + PFLU_RS03565 0.16 -0.8
822,289 + PFLU_RS03565 0.16 -0.7
822,290 - PFLU_RS03565 0.16 -1.9

Or see this region's nucleotide sequence