Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS03245

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS03240 and PFLU_RS03245 are separated by 66 nucleotidesPFLU_RS03245 and PFLU_RS03250 are separated by 147 nucleotidesPFLU_RS03250 and PFLU_RS03255 are separated by 85 nucleotides PFLU_RS03240: PFLU_RS03240 - copper-translocating P-type ATPase, at 748,572 to 750,773 _RS03240 PFLU_RS03245: PFLU_RS03245 - hypothetical protein, at 750,840 to 751,220 _RS03245 PFLU_RS03250: PFLU_RS03250 - heavy-metal-associated domain-containing protein, at 751,368 to 751,565 _RS03250 PFLU_RS03255: PFLU_RS03255 - multidrug effflux MFS transporter, at 751,651 to 752,844 _RS03255 Position (kb) 750 751 752Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 749.875 kb on - strand, within PFLU_RS03240at 750.030 kb on + strand, within PFLU_RS03240at 750.036 kb on + strand, within PFLU_RS03240at 750.093 kb on + strand, within PFLU_RS03240at 750.094 kb on - strand, within PFLU_RS03240at 750.094 kb on - strand, within PFLU_RS03240at 750.175 kb on + strand, within PFLU_RS03240at 750.176 kb on - strand, within PFLU_RS03240at 750.176 kb on - strand, within PFLU_RS03240at 750.223 kb on + strand, within PFLU_RS03240at 750.224 kb on - strand, within PFLU_RS03240at 750.224 kb on - strand, within PFLU_RS03240at 750.265 kb on + strand, within PFLU_RS03240at 750.265 kb on + strand, within PFLU_RS03240at 750.265 kb on + strand, within PFLU_RS03240at 750.265 kb on + strand, within PFLU_RS03240at 750.265 kb on + strand, within PFLU_RS03240at 750.265 kb on + strand, within PFLU_RS03240at 750.265 kb on + strand, within PFLU_RS03240at 750.265 kb on + strand, within PFLU_RS03240at 750.266 kb on - strand, within PFLU_RS03240at 750.266 kb on - strand, within PFLU_RS03240at 750.266 kb on - strand, within PFLU_RS03240at 750.266 kb on - strand, within PFLU_RS03240at 750.266 kb on - strand, within PFLU_RS03240at 750.266 kb on - strand, within PFLU_RS03240at 750.269 kb on + strand, within PFLU_RS03240at 750.269 kb on + strand, within PFLU_RS03240at 750.269 kb on + strand, within PFLU_RS03240at 750.269 kb on + strand, within PFLU_RS03240at 750.269 kb on + strand, within PFLU_RS03240at 750.270 kb on - strand, within PFLU_RS03240at 750.270 kb on - strand, within PFLU_RS03240at 750.270 kb on - strand, within PFLU_RS03240at 750.270 kb on - strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.574 kb on + strandat 750.574 kb on + strandat 750.574 kb on + strandat 750.802 kb on + strandat 750.803 kb on - strandat 750.841 kb on + strandat 750.841 kb on + strandat 750.842 kb on - strandat 750.842 kb on - strandat 750.842 kb on - strandat 750.844 kb on + strandat 750.845 kb on - strandat 750.868 kb on + strandat 750.868 kb on + strandat 750.868 kb on + strandat 750.868 kb on + strandat 750.868 kb on + strandat 750.868 kb on + strandat 750.868 kb on + strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 751.005 kb on + strand, within PFLU_RS03245at 751.005 kb on + strand, within PFLU_RS03245at 751.005 kb on + strand, within PFLU_RS03245at 751.006 kb on - strand, within PFLU_RS03245at 751.006 kb on - strand, within PFLU_RS03245at 751.006 kb on - strand, within PFLU_RS03245at 751.006 kb on - strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.141 kb on + strand, within PFLU_RS03245at 751.141 kb on + strand, within PFLU_RS03245at 751.141 kb on + strand, within PFLU_RS03245at 751.141 kb on + strand, within PFLU_RS03245at 751.141 kb on + strand, within PFLU_RS03245at 751.142 kb on - strand, within PFLU_RS03245at 751.142 kb on - strand, within PFLU_RS03245at 751.142 kb on - strand, within PFLU_RS03245at 751.282 kb on - strandat 751.296 kb on + strandat 751.296 kb on + strandat 751.296 kb on + strandat 751.296 kb on + strandat 751.297 kb on - strandat 751.297 kb on - strandat 751.315 kb on + strandat 751.315 kb on + strandat 751.316 kb on - strandat 751.375 kb on + strandat 751.375 kb on + strandat 751.375 kb on + strandat 751.376 kb on - strandat 751.376 kb on - strandat 751.376 kb on - strandat 751.376 kb on - strandat 751.376 kb on - strandat 751.545 kb on + strand, within PFLU_RS03250at 751.546 kb on - strandat 751.546 kb on - strandat 751.559 kb on - strandat 751.559 kb on - strandat 751.559 kb on - strandat 751.559 kb on - strandat 751.577 kb on - strandat 751.580 kb on + strandat 751.589 kb on - strandat 751.589 kb on - strandat 751.621 kb on + strandat 751.664 kb on + strandat 751.665 kb on - strandat 751.665 kb on - strandat 751.665 kb on - strandat 751.792 kb on + strand, within PFLU_RS03255at 751.792 kb on + strand, within PFLU_RS03255at 751.792 kb on + strand, within PFLU_RS03255at 751.793 kb on - strand, within PFLU_RS03255at 751.793 kb on - strand, within PFLU_RS03255at 751.793 kb on - strand, within PFLU_RS03255at 751.825 kb on + strand, within PFLU_RS03255at 751.825 kb on + strand, within PFLU_RS03255at 751.825 kb on + strand, within PFLU_RS03255at 751.825 kb on + strand, within PFLU_RS03255at 751.825 kb on + strand, within PFLU_RS03255at 751.825 kb on + strand, within PFLU_RS03255at 751.826 kb on - strand, within PFLU_RS03255at 751.826 kb on - strand, within PFLU_RS03255at 751.826 kb on - strand, within PFLU_RS03255at 751.826 kb on - strand, within PFLU_RS03255at 751.826 kb on - strand, within PFLU_RS03255at 751.826 kb on - strand, within PFLU_RS03255at 751.826 kb on - strand, within PFLU_RS03255at 751.887 kb on + strand, within PFLU_RS03255at 751.887 kb on + strand, within PFLU_RS03255at 751.887 kb on + strand, within PFLU_RS03255at 751.887 kb on + strand, within PFLU_RS03255at 751.887 kb on + strand, within PFLU_RS03255at 751.888 kb on - strand, within PFLU_RS03255at 751.888 kb on - strand, within PFLU_RS03255at 752.038 kb on + strand, within PFLU_RS03255at 752.038 kb on + strand, within PFLU_RS03255at 752.039 kb on - strand, within PFLU_RS03255at 752.039 kb on - strand, within PFLU_RS03255at 752.147 kb on + strand, within PFLU_RS03255

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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749,875 - PFLU_RS03240 0.59 -0.4
750,030 + PFLU_RS03240 0.66 +0.9
750,036 + PFLU_RS03240 0.66 -1.8
750,093 + PFLU_RS03240 0.69 -0.3
750,094 - PFLU_RS03240 0.69 -0.5
750,094 - PFLU_RS03240 0.69 -2.9
750,175 + PFLU_RS03240 0.73 -0.8
750,176 - PFLU_RS03240 0.73 -2.4
750,176 - PFLU_RS03240 0.73 -1.0
750,223 + PFLU_RS03240 0.75 +0.8
750,224 - PFLU_RS03240 0.75 -1.2
750,224 - PFLU_RS03240 0.75 +0.3
750,265 + PFLU_RS03240 0.77 +1.5
750,265 + PFLU_RS03240 0.77 +0.2
750,265 + PFLU_RS03240 0.77 -1.2
750,265 + PFLU_RS03240 0.77 -0.1
750,265 + PFLU_RS03240 0.77 +0.8
750,265 + PFLU_RS03240 0.77 -0.2
750,265 + PFLU_RS03240 0.77 +0.0
750,265 + PFLU_RS03240 0.77 -2.0
750,266 - PFLU_RS03240 0.77 +0.7
750,266 - PFLU_RS03240 0.77 -1.7
750,266 - PFLU_RS03240 0.77 -1.4
750,266 - PFLU_RS03240 0.77 -2.0
750,266 - PFLU_RS03240 0.77 -1.1
750,266 - PFLU_RS03240 0.77 -0.3
750,269 + PFLU_RS03240 0.77 -1.4
750,269 + PFLU_RS03240 0.77 -0.8
750,269 + PFLU_RS03240 0.77 -1.5
750,269 + PFLU_RS03240 0.77 +0.1
750,269 + PFLU_RS03240 0.77 -0.4
750,270 - PFLU_RS03240 0.77 -1.8
750,270 - PFLU_RS03240 0.77 -2.7
750,270 - PFLU_RS03240 0.77 -1.8
750,270 - PFLU_RS03240 0.77 -0.9
750,358 + PFLU_RS03240 0.81 +3.2
750,358 + PFLU_RS03240 0.81 -1.8
750,358 + PFLU_RS03240 0.81 -1.0
750,358 + PFLU_RS03240 0.81 +1.7
750,358 + PFLU_RS03240 0.81 -3.4
750,358 + PFLU_RS03240 0.81 +0.9
750,358 + PFLU_RS03240 0.81 +0.7
750,358 + PFLU_RS03240 0.81 -1.7
750,358 + PFLU_RS03240 0.81 +1.2
750,358 + PFLU_RS03240 0.81 -3.3
750,358 + PFLU_RS03240 0.81 +0.1
750,358 + PFLU_RS03240 0.81 +2.2
750,358 + PFLU_RS03240 0.81 +2.5
750,358 + PFLU_RS03240 0.81 -2.6
750,358 + PFLU_RS03240 0.81 +1.9
750,359 - PFLU_RS03240 0.81 +0.3
750,359 - PFLU_RS03240 0.81 +0.8
750,359 - PFLU_RS03240 0.81 -0.7
750,359 - PFLU_RS03240 0.81 -0.8
750,359 - PFLU_RS03240 0.81 -3.1
750,359 - PFLU_RS03240 0.81 -0.2
750,359 - PFLU_RS03240 0.81 +0.7
750,359 - PFLU_RS03240 0.81 +0.1
750,359 - PFLU_RS03240 0.81 -2.2
750,359 - PFLU_RS03240 0.81 -2.6
750,359 - PFLU_RS03240 0.81 +2.2
750,359 - PFLU_RS03240 0.81 -1.2
750,359 - PFLU_RS03240 0.81 -0.7
750,359 - PFLU_RS03240 0.81 -1.6
750,574 + -0.1
750,574 + +0.0
750,574 + -0.0
750,802 + -1.6
750,803 - -1.6
750,841 + -0.0
750,841 + -0.3
750,842 - +0.7
750,842 - +0.7
750,842 - -1.5
750,844 + +1.1
750,845 - +0.2
750,868 + +2.4
750,868 + -0.1
750,868 + -2.0
750,868 + +2.7
750,868 + +0.1
750,868 + +0.2
750,868 + +1.8
750,869 - +2.7
750,869 - +1.8
750,869 - +0.6
750,869 - -1.6
750,869 - +1.6
750,869 - +0.4
750,869 - +1.8
750,869 - -0.9
750,869 - -0.8
750,869 - +1.6
750,869 - +0.8
750,869 - +0.2
750,869 - +1.7
750,869 - +1.4
750,869 - +1.1
750,869 - +0.2
750,869 - +1.5
751,005 + PFLU_RS03245 0.43 +0.6
751,005 + PFLU_RS03245 0.43 +0.5
751,005 + PFLU_RS03245 0.43 +1.1
751,006 - PFLU_RS03245 0.44 +1.2
751,006 - PFLU_RS03245 0.44 +0.2
751,006 - PFLU_RS03245 0.44 +3.2
751,006 - PFLU_RS03245 0.44 +1.4
751,078 + PFLU_RS03245 0.62 +1.7
751,078 + PFLU_RS03245 0.62 +1.3
751,078 + PFLU_RS03245 0.62 +1.4
751,078 + PFLU_RS03245 0.62 -0.1
751,078 + PFLU_RS03245 0.62 +2.2
751,078 + PFLU_RS03245 0.62 -2.0
751,078 + PFLU_RS03245 0.62 +0.7
751,078 + PFLU_RS03245 0.62 -0.1
751,078 + PFLU_RS03245 0.62 +1.3
751,078 + PFLU_RS03245 0.62 +3.1
751,078 + PFLU_RS03245 0.62 +0.1
751,078 + PFLU_RS03245 0.62 +1.6
751,078 + PFLU_RS03245 0.62 +0.6
751,079 - PFLU_RS03245 0.63 -0.6
751,079 - PFLU_RS03245 0.63 +0.9
751,079 - PFLU_RS03245 0.63 +1.5
751,079 - PFLU_RS03245 0.63 -0.8
751,079 - PFLU_RS03245 0.63 +3.4
751,079 - PFLU_RS03245 0.63 +0.5
751,079 - PFLU_RS03245 0.63 +0.2
751,079 - PFLU_RS03245 0.63 +2.1
751,079 - PFLU_RS03245 0.63 +1.6
751,079 - PFLU_RS03245 0.63 +1.0
751,079 - PFLU_RS03245 0.63 +0.2
751,079 - PFLU_RS03245 0.63 +1.0
751,079 - PFLU_RS03245 0.63 -0.9
751,141 + PFLU_RS03245 0.79 +4.1
751,141 + PFLU_RS03245 0.79 -0.2
751,141 + PFLU_RS03245 0.79 +0.1
751,141 + PFLU_RS03245 0.79 +1.3
751,141 + PFLU_RS03245 0.79 +3.1
751,142 - PFLU_RS03245 0.79 +1.2
751,142 - PFLU_RS03245 0.79 +2.3
751,142 - PFLU_RS03245 0.79 -0.6
751,282 - -0.3
751,296 + +1.3
751,296 + -0.1
751,296 + -0.1
751,296 + -0.6
751,297 - -1.3
751,297 - +2.0
751,315 + +1.4
751,315 + +0.3
751,316 - -0.4
751,375 + -0.9
751,375 + +1.0
751,375 + +0.7
751,376 - +0.0
751,376 - -0.3
751,376 - +0.1
751,376 - -1.3
751,376 - +1.9
751,545 + PFLU_RS03250 0.89 +0.8
751,546 - -0.1
751,546 - -0.6
751,559 - +1.1
751,559 - +2.2
751,559 - +1.0
751,559 - -1.6
751,577 - -0.9
751,580 + -2.0
751,589 - +0.7
751,589 - +0.7
751,621 + +0.3
751,664 + -1.7
751,665 - +3.8
751,665 - -0.3
751,665 - +1.5
751,792 + PFLU_RS03255 0.12 -3.4
751,792 + PFLU_RS03255 0.12 +0.0
751,792 + PFLU_RS03255 0.12 +2.8
751,793 - PFLU_RS03255 0.12 +0.9
751,793 - PFLU_RS03255 0.12 +0.7
751,793 - PFLU_RS03255 0.12 +0.2
751,825 + PFLU_RS03255 0.15 +0.6
751,825 + PFLU_RS03255 0.15 -1.8
751,825 + PFLU_RS03255 0.15 +1.1
751,825 + PFLU_RS03255 0.15 +0.2
751,825 + PFLU_RS03255 0.15 -1.6
751,825 + PFLU_RS03255 0.15 +1.1
751,826 - PFLU_RS03255 0.15 -0.8
751,826 - PFLU_RS03255 0.15 -0.3
751,826 - PFLU_RS03255 0.15 -0.1
751,826 - PFLU_RS03255 0.15 +0.9
751,826 - PFLU_RS03255 0.15 +0.1
751,826 - PFLU_RS03255 0.15 +0.6
751,826 - PFLU_RS03255 0.15 -2.8
751,887 + PFLU_RS03255 0.20 +1.2
751,887 + PFLU_RS03255 0.20 +0.9
751,887 + PFLU_RS03255 0.20 +1.3
751,887 + PFLU_RS03255 0.20 -0.2
751,887 + PFLU_RS03255 0.20 -0.4
751,888 - PFLU_RS03255 0.20 +0.4
751,888 - PFLU_RS03255 0.20 +1.4
752,038 + PFLU_RS03255 0.32 +1.6
752,038 + PFLU_RS03255 0.32 -2.0
752,039 - PFLU_RS03255 0.32 +1.4
752,039 - PFLU_RS03255 0.32 -0.9
752,147 + PFLU_RS03255 0.42 -0.9

Or see this region's nucleotide sequence