Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01605 and PFLU_RS01610 overlap by 1 nucleotides PFLU_RS01610 and PFLU_RS01615 are separated by 0 nucleotides PFLU_RS01615 and PFLU_RS01620 are separated by 39 nucleotides PFLU_RS01620 and PFLU_RS01625 are separated by 9 nucleotides
PFLU_RS01605: PFLU_RS01605 - imidazoleglycerol-phosphate dehydratase HisB, at 360,640 to 361,233
_RS01605
PFLU_RS01610: PFLU_RS01610 - imidazole glycerol phosphate synthase subunit HisH, at 361,233 to 361,871
_RS01610
PFLU_RS01615: PFLU_RS01615 - DUF2164 domain-containing protein, at 361,872 to 362,129
_RS01615
PFLU_RS01620: PFLU_RS01620 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 362,169 to 362,906
_RS01620
PFLU_RS01625: PFLU_RS01625 - imidazole glycerol phosphate synthase subunit HisF, at 362,916 to 363,686
_RS01625
Position (kb) 361
362
363 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 360.928 kb on + strand, within PFLU_RS01605 at 360.928 kb on + strand, within PFLU_RS01605 at 360.928 kb on + strand, within PFLU_RS01605 at 360.929 kb on - strand, within PFLU_RS01605 at 360.929 kb on - strand, within PFLU_RS01605 at 361.006 kb on + strand, within PFLU_RS01605 at 361.007 kb on - strand, within PFLU_RS01605 at 361.179 kb on - strand at 361.232 kb on - strand at 361.232 kb on - strand at 361.303 kb on + strand, within PFLU_RS01610 at 361.303 kb on + strand, within PFLU_RS01610 at 361.303 kb on + strand, within PFLU_RS01610 at 361.303 kb on + strand, within PFLU_RS01610 at 361.303 kb on + strand, within PFLU_RS01610 at 361.303 kb on + strand, within PFLU_RS01610 at 361.303 kb on + strand, within PFLU_RS01610 at 361.303 kb on + strand, within PFLU_RS01610 at 361.303 kb on + strand, within PFLU_RS01610 at 361.304 kb on - strand, within PFLU_RS01610 at 361.304 kb on - strand, within PFLU_RS01610 at 361.304 kb on - strand, within PFLU_RS01610 at 361.304 kb on - strand, within PFLU_RS01610 at 361.304 kb on - strand, within PFLU_RS01610 at 361.304 kb on - strand, within PFLU_RS01610 at 361.432 kb on + strand, within PFLU_RS01610 at 361.433 kb on - strand, within PFLU_RS01610 at 361.433 kb on - strand, within PFLU_RS01610 at 361.433 kb on - strand, within PFLU_RS01610 at 361.433 kb on - strand, within PFLU_RS01610 at 361.433 kb on - strand, within PFLU_RS01610 at 361.681 kb on - strand, within PFLU_RS01610 at 361.681 kb on - strand, within PFLU_RS01610 at 361.681 kb on - strand, within PFLU_RS01610 at 361.695 kb on + strand, within PFLU_RS01610 at 361.695 kb on + strand, within PFLU_RS01610 at 361.695 kb on + strand, within PFLU_RS01610 at 361.695 kb on + strand, within PFLU_RS01610 at 361.695 kb on + strand, within PFLU_RS01610 at 361.695 kb on + strand, within PFLU_RS01610 at 361.695 kb on + strand, within PFLU_RS01610 at 361.695 kb on + strand, within PFLU_RS01610 at 361.695 kb on + strand, within PFLU_RS01610 at 361.695 kb on + strand, within PFLU_RS01610 at 361.695 kb on + strand, within PFLU_RS01610 at 361.696 kb on - strand, within PFLU_RS01610 at 361.696 kb on - strand, within PFLU_RS01610 at 361.696 kb on - strand, within PFLU_RS01610 at 361.696 kb on - strand, within PFLU_RS01610 at 361.696 kb on - strand, within PFLU_RS01610 at 361.696 kb on - strand, within PFLU_RS01610 at 361.696 kb on - strand, within PFLU_RS01610 at 361.698 kb on + strand, within PFLU_RS01610 at 361.698 kb on + strand, within PFLU_RS01610 at 361.698 kb on + strand, within PFLU_RS01610 at 361.698 kb on + strand, within PFLU_RS01610 at 361.698 kb on + strand, within PFLU_RS01610 at 361.698 kb on + strand, within PFLU_RS01610 at 361.698 kb on + strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.817 kb on + strand at 361.870 kb on - strand at 361.931 kb on + strand, within PFLU_RS01615 at 362.037 kb on + strand, within PFLU_RS01615 at 362.037 kb on + strand, within PFLU_RS01615 at 362.038 kb on - strand, within PFLU_RS01615 at 362.040 kb on + strand, within PFLU_RS01615 at 362.040 kb on + strand, within PFLU_RS01615 at 362.041 kb on - strand, within PFLU_RS01615 at 362.041 kb on - strand, within PFLU_RS01615 at 362.041 kb on - strand, within PFLU_RS01615 at 362.156 kb on + strand at 362.177 kb on + strand at 362.178 kb on - strand at 362.178 kb on - strand at 362.212 kb on + strand at 362.212 kb on + strand at 362.212 kb on + strand at 362.213 kb on - strand at 362.213 kb on - strand at 362.213 kb on - strand at 362.213 kb on - strand at 362.213 kb on - strand at 362.213 kb on - strand at 362.213 kb on - strand at 362.445 kb on + strand, within PFLU_RS01620 at 362.445 kb on + strand, within PFLU_RS01620 at 362.445 kb on + strand, within PFLU_RS01620 at 362.446 kb on - strand, within PFLU_RS01620 at 362.446 kb on - strand, within PFLU_RS01620 at 362.446 kb on - strand, within PFLU_RS01620 at 362.446 kb on - strand, within PFLU_RS01620 at 362.446 kb on - strand, within PFLU_RS01620 at 362.449 kb on + strand, within PFLU_RS01620 at 362.449 kb on + strand, within PFLU_RS01620 at 362.449 kb on + strand, within PFLU_RS01620 at 362.449 kb on + strand, within PFLU_RS01620 at 362.449 kb on + strand, within PFLU_RS01620 at 362.449 kb on + strand, within PFLU_RS01620 at 362.449 kb on + strand, within PFLU_RS01620 at 362.449 kb on + strand, within PFLU_RS01620 at 362.449 kb on + strand, within PFLU_RS01620 at 362.449 kb on + strand, within PFLU_RS01620 at 362.449 kb on + strand, within PFLU_RS01620 at 362.449 kb on + strand, within PFLU_RS01620 at 362.449 kb on + strand, within PFLU_RS01620 at 362.449 kb on + strand, within PFLU_RS01620 at 362.450 kb on - strand, within PFLU_RS01620 at 362.450 kb on - strand, within PFLU_RS01620 at 362.450 kb on - strand, within PFLU_RS01620 at 362.450 kb on - strand, within PFLU_RS01620 at 362.450 kb on - strand, within PFLU_RS01620 at 362.466 kb on + strand, within PFLU_RS01620 at 362.466 kb on + strand, within PFLU_RS01620 at 362.466 kb on + strand, within PFLU_RS01620 at 362.466 kb on + strand, within PFLU_RS01620 at 362.467 kb on - strand, within PFLU_RS01620 at 362.467 kb on - strand, within PFLU_RS01620 at 362.467 kb on - strand, within PFLU_RS01620 at 362.467 kb on - strand, within PFLU_RS01620 at 362.470 kb on + strand, within PFLU_RS01620 at 362.470 kb on + strand, within PFLU_RS01620 at 362.470 kb on + strand, within PFLU_RS01620 at 362.471 kb on - strand, within PFLU_RS01620 at 362.471 kb on - strand, within PFLU_RS01620 at 362.471 kb on - strand, within PFLU_RS01620 at 362.471 kb on - strand, within PFLU_RS01620 at 362.471 kb on - strand, within PFLU_RS01620 at 362.665 kb on - strand, within PFLU_RS01620 at 362.665 kb on - strand, within PFLU_RS01620 at 362.847 kb on + strand at 362.847 kb on + strand at 362.847 kb on + strand at 362.847 kb on + strand at 362.848 kb on - strand at 362.855 kb on + strand at 362.856 kb on - strand at 362.883 kb on + strand at 362.883 kb on + strand at 362.884 kb on - strand at 362.895 kb on + strand at 362.895 kb on + strand at 363.060 kb on - strand, within PFLU_RS01625 at 363.060 kb on - strand, within PFLU_RS01625 at 363.110 kb on + strand, within PFLU_RS01625
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 360,928 + PFLU_RS01605 0.48 -2.4 360,928 + PFLU_RS01605 0.48 -1.6 360,928 + PFLU_RS01605 0.48 -3.3 360,929 - PFLU_RS01605 0.49 -2.5 360,929 - PFLU_RS01605 0.49 -1.9 361,006 + PFLU_RS01605 0.62 -2.5 361,007 - PFLU_RS01605 0.62 -1.7 361,179 - -1.7 361,232 - -1.1 361,232 - -1.7 361,303 + PFLU_RS01610 0.11 +0.2 361,303 + PFLU_RS01610 0.11 -1.8 361,303 + PFLU_RS01610 0.11 -0.9 361,303 + PFLU_RS01610 0.11 -2.4 361,303 + PFLU_RS01610 0.11 -0.5 361,303 + PFLU_RS01610 0.11 -1.8 361,303 + PFLU_RS01610 0.11 +1.2 361,303 + PFLU_RS01610 0.11 -2.2 361,303 + PFLU_RS01610 0.11 -1.1 361,304 - PFLU_RS01610 0.11 -2.8 361,304 - PFLU_RS01610 0.11 -2.1 361,304 - PFLU_RS01610 0.11 -2.6 361,304 - PFLU_RS01610 0.11 -1.8 361,304 - PFLU_RS01610 0.11 -2.1 361,304 - PFLU_RS01610 0.11 -0.3 361,432 + PFLU_RS01610 0.31 -1.2 361,433 - PFLU_RS01610 0.31 -0.0 361,433 - PFLU_RS01610 0.31 -0.9 361,433 - PFLU_RS01610 0.31 -1.6 361,433 - PFLU_RS01610 0.31 -2.6 361,433 - PFLU_RS01610 0.31 -0.9 361,681 - PFLU_RS01610 0.70 -0.9 361,681 - PFLU_RS01610 0.70 +0.1 361,681 - PFLU_RS01610 0.70 +0.6 361,695 + PFLU_RS01610 0.72 +0.9 361,695 + PFLU_RS01610 0.72 -2.0 361,695 + PFLU_RS01610 0.72 +1.2 361,695 + PFLU_RS01610 0.72 -0.1 361,695 + PFLU_RS01610 0.72 +0.2 361,695 + PFLU_RS01610 0.72 -0.8 361,695 + PFLU_RS01610 0.72 -2.3 361,695 + PFLU_RS01610 0.72 -0.3 361,695 + PFLU_RS01610 0.72 -1.9 361,695 + PFLU_RS01610 0.72 -1.5 361,695 + PFLU_RS01610 0.72 -1.4 361,696 - PFLU_RS01610 0.72 -0.9 361,696 - PFLU_RS01610 0.72 -2.0 361,696 - PFLU_RS01610 0.72 +0.2 361,696 - PFLU_RS01610 0.72 -1.1 361,696 - PFLU_RS01610 0.72 -3.1 361,696 - PFLU_RS01610 0.72 -2.0 361,696 - PFLU_RS01610 0.72 +0.2 361,698 + PFLU_RS01610 0.73 -1.0 361,698 + PFLU_RS01610 0.73 +0.5 361,698 + PFLU_RS01610 0.73 -0.8 361,698 + PFLU_RS01610 0.73 -0.0 361,698 + PFLU_RS01610 0.73 -1.5 361,698 + PFLU_RS01610 0.73 +0.6 361,698 + PFLU_RS01610 0.73 +0.9 361,699 - PFLU_RS01610 0.73 -2.4 361,699 - PFLU_RS01610 0.73 -2.5 361,699 - PFLU_RS01610 0.73 +0.1 361,699 - PFLU_RS01610 0.73 -1.8 361,699 - PFLU_RS01610 0.73 -0.9 361,699 - PFLU_RS01610 0.73 -1.7 361,699 - PFLU_RS01610 0.73 +1.2 361,699 - PFLU_RS01610 0.73 -1.2 361,699 - PFLU_RS01610 0.73 +1.8 361,699 - PFLU_RS01610 0.73 -1.6 361,699 - PFLU_RS01610 0.73 -1.2 361,699 - PFLU_RS01610 0.73 -2.7 361,699 - PFLU_RS01610 0.73 -1.1 361,817 + -1.4 361,870 - -1.8 361,931 + PFLU_RS01615 0.23 -0.2 362,037 + PFLU_RS01615 0.64 +2.8 362,037 + PFLU_RS01615 0.64 +1.1 362,038 - PFLU_RS01615 0.64 -1.9 362,040 + PFLU_RS01615 0.65 -0.3 362,040 + PFLU_RS01615 0.65 -1.5 362,041 - PFLU_RS01615 0.66 -1.9 362,041 - PFLU_RS01615 0.66 -3.3 362,041 - PFLU_RS01615 0.66 -2.5 362,156 + -2.1 362,177 + -1.6 362,178 - -1.1 362,178 - -2.8 362,212 + -0.5 362,212 + -2.1 362,212 + -2.5 362,213 - -2.6 362,213 - -2.6 362,213 - -2.7 362,213 - -1.8 362,213 - -1.2 362,213 - -1.4 362,213 - -1.9 362,445 + PFLU_RS01620 0.37 -2.1 362,445 + PFLU_RS01620 0.37 -2.3 362,445 + PFLU_RS01620 0.37 -1.5 362,446 - PFLU_RS01620 0.38 -2.4 362,446 - PFLU_RS01620 0.38 -3.0 362,446 - PFLU_RS01620 0.38 -2.0 362,446 - PFLU_RS01620 0.38 -1.5 362,446 - PFLU_RS01620 0.38 -0.0 362,449 + PFLU_RS01620 0.38 -3.0 362,449 + PFLU_RS01620 0.38 -3.1 362,449 + PFLU_RS01620 0.38 -1.2 362,449 + PFLU_RS01620 0.38 -2.8 362,449 + PFLU_RS01620 0.38 -2.3 362,449 + PFLU_RS01620 0.38 -1.5 362,449 + PFLU_RS01620 0.38 -0.4 362,449 + PFLU_RS01620 0.38 -2.7 362,449 + PFLU_RS01620 0.38 -2.5 362,449 + PFLU_RS01620 0.38 -2.6 362,449 + PFLU_RS01620 0.38 -2.4 362,449 + PFLU_RS01620 0.38 -1.0 362,449 + PFLU_RS01620 0.38 -1.7 362,449 + PFLU_RS01620 0.38 -2.8 362,450 - PFLU_RS01620 0.38 -1.3 362,450 - PFLU_RS01620 0.38 -0.5 362,450 - PFLU_RS01620 0.38 -1.0 362,450 - PFLU_RS01620 0.38 -1.8 362,450 - PFLU_RS01620 0.38 -2.7 362,466 + PFLU_RS01620 0.40 -1.9 362,466 + PFLU_RS01620 0.40 -3.2 362,466 + PFLU_RS01620 0.40 -2.6 362,466 + PFLU_RS01620 0.40 -2.4 362,467 - PFLU_RS01620 0.40 -2.1 362,467 - PFLU_RS01620 0.40 +0.5 362,467 - PFLU_RS01620 0.40 -1.5 362,467 - PFLU_RS01620 0.40 -2.3 362,470 + PFLU_RS01620 0.41 -2.3 362,470 + PFLU_RS01620 0.41 -3.1 362,470 + PFLU_RS01620 0.41 -1.3 362,471 - PFLU_RS01620 0.41 -0.0 362,471 - PFLU_RS01620 0.41 -2.4 362,471 - PFLU_RS01620 0.41 -2.8 362,471 - PFLU_RS01620 0.41 -2.7 362,471 - PFLU_RS01620 0.41 -0.4 362,665 - PFLU_RS01620 0.67 +0.2 362,665 - PFLU_RS01620 0.67 -2.1 362,847 + -2.7 362,847 + -2.2 362,847 + -3.1 362,847 + -0.2 362,848 - -2.5 362,855 + -1.7 362,856 - -1.8 362,883 + +0.7 362,883 + -2.1 362,884 - -2.3 362,895 + -1.6 362,895 + +0.8 363,060 - PFLU_RS01625 0.19 -1.8 363,060 - PFLU_RS01625 0.19 -1.5 363,110 + PFLU_RS01625 0.25 -1.4
Or see this region's nucleotide sequence